Experiment: root sample 4; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19965 and ABZR87_RS19970 are separated by 299 nucleotides ABZR87_RS19970 and ABZR87_RS19975 are separated by 37 nucleotides
ABZR87_RS19965: ABZR87_RS19965 - efflux RND transporter periplasmic adaptor subunit, at 857,933 to 859,018
_RS19965
ABZR87_RS19970: ABZR87_RS19970 - hypothetical protein, at 859,318 to 859,818
_RS19970
ABZR87_RS19975: ABZR87_RS19975 - thymidine phosphorylase family protein, at 859,856 to 861,403
_RS19975
Position (kb) 859
860 Strain fitness (log2 ratio) -2
-1
0
1
2 at 858.342 kb on + strand, within ABZR87_RS19965 at 858.344 kb on + strand, within ABZR87_RS19965 at 858.344 kb on + strand, within ABZR87_RS19965 at 858.344 kb on + strand, within ABZR87_RS19965 at 858.344 kb on + strand, within ABZR87_RS19965 at 858.345 kb on - strand, within ABZR87_RS19965 at 858.346 kb on + strand, within ABZR87_RS19965 at 858.346 kb on + strand, within ABZR87_RS19965 at 858.618 kb on + strand, within ABZR87_RS19965 at 858.618 kb on + strand, within ABZR87_RS19965 at 858.619 kb on - strand, within ABZR87_RS19965 at 858.619 kb on - strand, within ABZR87_RS19965 at 858.679 kb on + strand, within ABZR87_RS19965 at 858.679 kb on + strand, within ABZR87_RS19965 at 858.807 kb on + strand, within ABZR87_RS19965 at 858.807 kb on + strand, within ABZR87_RS19965 at 858.807 kb on + strand, within ABZR87_RS19965 at 858.807 kb on + strand, within ABZR87_RS19965 at 858.807 kb on + strand, within ABZR87_RS19965 at 858.807 kb on + strand, within ABZR87_RS19965 at 858.807 kb on + strand, within ABZR87_RS19965 at 858.808 kb on - strand, within ABZR87_RS19965 at 858.808 kb on - strand, within ABZR87_RS19965 at 858.808 kb on - strand, within ABZR87_RS19965 at 858.808 kb on - strand, within ABZR87_RS19965 at 858.808 kb on - strand, within ABZR87_RS19965 at 858.808 kb on - strand, within ABZR87_RS19965 at 858.808 kb on - strand, within ABZR87_RS19965 at 858.808 kb on - strand, within ABZR87_RS19965 at 858.808 kb on - strand, within ABZR87_RS19965 at 858.808 kb on - strand, within ABZR87_RS19965 at 859.075 kb on + strand at 859.089 kb on + strand at 859.089 kb on + strand at 859.089 kb on + strand at 859.090 kb on - strand at 859.090 kb on - strand at 859.090 kb on - strand at 859.090 kb on - strand at 859.312 kb on + strand at 859.744 kb on + strand, within ABZR87_RS19970 at 859.744 kb on + strand, within ABZR87_RS19970 at 859.744 kb on + strand, within ABZR87_RS19970 at 859.799 kb on + strand at 859.800 kb on - strand at 859.905 kb on + strand at 859.905 kb on + strand at 859.905 kb on + strand at 859.905 kb on + strand at 859.905 kb on + strand at 859.905 kb on + strand at 859.906 kb on - strand at 859.917 kb on + strand at 859.917 kb on + strand at 859.917 kb on + strand at 859.918 kb on - strand at 859.918 kb on - strand at 859.918 kb on - strand at 859.918 kb on - strand at 859.955 kb on + strand at 859.955 kb on + strand at 860.274 kb on - strand, within ABZR87_RS19975
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 4; outgrowth in LB remove 858,342 + ABZR87_RS19965 0.38 +0.6 858,344 + ABZR87_RS19965 0.38 +1.1 858,344 + ABZR87_RS19965 0.38 -0.2 858,344 + ABZR87_RS19965 0.38 -0.4 858,344 + ABZR87_RS19965 0.38 +2.3 858,345 - ABZR87_RS19965 0.38 +0.1 858,346 + ABZR87_RS19965 0.38 -0.2 858,346 + ABZR87_RS19965 0.38 -0.4 858,618 + ABZR87_RS19965 0.63 +1.7 858,618 + ABZR87_RS19965 0.63 -1.1 858,619 - ABZR87_RS19965 0.63 -0.2 858,619 - ABZR87_RS19965 0.63 -1.5 858,679 + ABZR87_RS19965 0.69 -0.1 858,679 + ABZR87_RS19965 0.69 +1.4 858,807 + ABZR87_RS19965 0.80 -0.4 858,807 + ABZR87_RS19965 0.80 -0.6 858,807 + ABZR87_RS19965 0.80 -0.1 858,807 + ABZR87_RS19965 0.80 -1.2 858,807 + ABZR87_RS19965 0.80 +0.1 858,807 + ABZR87_RS19965 0.80 +0.2 858,807 + ABZR87_RS19965 0.80 +2.0 858,808 - ABZR87_RS19965 0.81 -0.7 858,808 - ABZR87_RS19965 0.81 +0.0 858,808 - ABZR87_RS19965 0.81 -0.4 858,808 - ABZR87_RS19965 0.81 -0.5 858,808 - ABZR87_RS19965 0.81 -0.0 858,808 - ABZR87_RS19965 0.81 +0.2 858,808 - ABZR87_RS19965 0.81 +1.4 858,808 - ABZR87_RS19965 0.81 +0.1 858,808 - ABZR87_RS19965 0.81 -0.1 858,808 - ABZR87_RS19965 0.81 +1.2 859,075 + +1.1 859,089 + -0.1 859,089 + +0.6 859,089 + -0.5 859,090 - -0.9 859,090 - -0.6 859,090 - +0.3 859,090 - -0.2 859,312 + +0.4 859,744 + ABZR87_RS19970 0.85 +0.8 859,744 + ABZR87_RS19970 0.85 -1.5 859,744 + ABZR87_RS19970 0.85 -1.3 859,799 + +2.0 859,800 - -0.6 859,905 + +0.2 859,905 + +0.7 859,905 + -0.3 859,905 + +0.2 859,905 + +1.4 859,905 + -0.2 859,906 - +2.0 859,917 + -1.1 859,917 + -2.5 859,917 + -0.1 859,918 - -0.2 859,918 - +0.3 859,918 - -0.4 859,918 - +1.1 859,955 + -0.1 859,955 + -0.5 860,274 - ABZR87_RS19975 0.27 -1.7
Or see this region's nucleotide sequence