Experiment: root sample 4; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18455 and ABZR87_RS18460 are separated by 23 nucleotides ABZR87_RS18460 and ABZR87_RS18465 are separated by 12 nucleotides ABZR87_RS18465 and ABZR87_RS18470 are separated by 37 nucleotides ABZR87_RS18470 and ABZR87_RS18475 are separated by 189 nucleotides
ABZR87_RS18455: ABZR87_RS18455 - shikimate dehydrogenase, at 500,644 to 501,477
_RS18455
ABZR87_RS18460: ABZR87_RS18460 - type II 3-dehydroquinate dehydratase, at 501,501 to 501,944
_RS18460
ABZR87_RS18465: ABZR87_RS18465 - YdeI/OmpD-associated family protein, at 501,957 to 502,526
_RS18465
ABZR87_RS18470: ABZR87_RS18470 - lipocalin-like domain-containing protein, at 502,564 to 502,989
_RS18470
ABZR87_RS18475: ABZR87_RS18475 - recombination-associated protein RdgC, at 503,179 to 504,102
_RS18475
Position (kb) 501
502
503 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 501.175 kb on + strand, within ABZR87_RS18455 at 501.293 kb on - strand, within ABZR87_RS18455 at 501.293 kb on - strand, within ABZR87_RS18455 at 501.304 kb on + strand, within ABZR87_RS18455 at 501.304 kb on + strand, within ABZR87_RS18455 at 501.305 kb on - strand, within ABZR87_RS18455 at 501.745 kb on - strand, within ABZR87_RS18460 at 501.745 kb on - strand, within ABZR87_RS18460 at 501.745 kb on - strand, within ABZR87_RS18460 at 501.750 kb on + strand, within ABZR87_RS18460 at 501.750 kb on + strand, within ABZR87_RS18460 at 501.751 kb on - strand, within ABZR87_RS18460 at 501.751 kb on - strand, within ABZR87_RS18460 at 501.803 kb on + strand, within ABZR87_RS18460 at 501.803 kb on + strand, within ABZR87_RS18460 at 501.803 kb on + strand, within ABZR87_RS18460 at 501.803 kb on + strand, within ABZR87_RS18460 at 501.803 kb on + strand, within ABZR87_RS18460 at 501.803 kb on + strand, within ABZR87_RS18460 at 501.803 kb on + strand, within ABZR87_RS18460 at 501.804 kb on - strand, within ABZR87_RS18460 at 501.804 kb on - strand, within ABZR87_RS18460 at 501.804 kb on - strand, within ABZR87_RS18460 at 501.804 kb on - strand, within ABZR87_RS18460 at 501.804 kb on - strand, within ABZR87_RS18460 at 501.804 kb on - strand, within ABZR87_RS18460 at 501.804 kb on - strand, within ABZR87_RS18460 at 501.847 kb on + strand, within ABZR87_RS18460 at 501.847 kb on + strand, within ABZR87_RS18460 at 501.847 kb on + strand, within ABZR87_RS18460 at 501.848 kb on - strand, within ABZR87_RS18460 at 501.897 kb on + strand, within ABZR87_RS18460 at 501.898 kb on - strand, within ABZR87_RS18460 at 501.943 kb on - strand at 502.080 kb on + strand, within ABZR87_RS18465 at 502.080 kb on + strand, within ABZR87_RS18465 at 502.168 kb on + strand, within ABZR87_RS18465 at 502.169 kb on - strand, within ABZR87_RS18465 at 502.324 kb on + strand, within ABZR87_RS18465 at 502.324 kb on + strand, within ABZR87_RS18465 at 502.325 kb on - strand, within ABZR87_RS18465 at 502.366 kb on + strand, within ABZR87_RS18465 at 502.367 kb on - strand, within ABZR87_RS18465 at 502.396 kb on + strand, within ABZR87_RS18465 at 502.397 kb on - strand, within ABZR87_RS18465 at 502.397 kb on - strand, within ABZR87_RS18465 at 502.585 kb on + strand at 502.585 kb on + strand at 502.586 kb on - strand at 502.670 kb on + strand, within ABZR87_RS18470 at 502.671 kb on - strand, within ABZR87_RS18470 at 502.764 kb on + strand, within ABZR87_RS18470 at 502.764 kb on + strand, within ABZR87_RS18470 at 502.764 kb on + strand, within ABZR87_RS18470 at 502.765 kb on - strand, within ABZR87_RS18470 at 502.766 kb on + strand, within ABZR87_RS18470 at 502.767 kb on - strand, within ABZR87_RS18470 at 502.780 kb on - strand, within ABZR87_RS18470 at 502.810 kb on - strand, within ABZR87_RS18470 at 502.810 kb on - strand, within ABZR87_RS18470 at 502.989 kb on + strand at 502.989 kb on + strand at 502.990 kb on - strand at 502.990 kb on - strand at 502.990 kb on - strand at 502.990 kb on - strand at 503.065 kb on - strand at 503.065 kb on - strand at 503.065 kb on - strand at 503.068 kb on - strand at 503.068 kb on - strand at 503.068 kb on - strand at 503.068 kb on - strand at 503.068 kb on - strand at 503.070 kb on + strand at 503.129 kb on + strand at 503.151 kb on + strand at 503.172 kb on + strand at 503.288 kb on + strand, within ABZR87_RS18475 at 503.288 kb on + strand, within ABZR87_RS18475 at 503.289 kb on - strand, within ABZR87_RS18475
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 4; outgrowth in LB remove 501,175 + ABZR87_RS18455 0.64 +0.1 501,293 - ABZR87_RS18455 0.78 +0.2 501,293 - ABZR87_RS18455 0.78 -0.1 501,304 + ABZR87_RS18455 0.79 +1.2 501,304 + ABZR87_RS18455 0.79 +0.5 501,305 - ABZR87_RS18455 0.79 -0.2 501,745 - ABZR87_RS18460 0.55 +1.0 501,745 - ABZR87_RS18460 0.55 +0.7 501,745 - ABZR87_RS18460 0.55 +0.3 501,750 + ABZR87_RS18460 0.56 +0.4 501,750 + ABZR87_RS18460 0.56 -0.6 501,751 - ABZR87_RS18460 0.56 -0.8 501,751 - ABZR87_RS18460 0.56 +0.8 501,803 + ABZR87_RS18460 0.68 -0.3 501,803 + ABZR87_RS18460 0.68 -2.8 501,803 + ABZR87_RS18460 0.68 +0.4 501,803 + ABZR87_RS18460 0.68 +1.3 501,803 + ABZR87_RS18460 0.68 +0.2 501,803 + ABZR87_RS18460 0.68 +0.2 501,803 + ABZR87_RS18460 0.68 -0.4 501,804 - ABZR87_RS18460 0.68 -1.3 501,804 - ABZR87_RS18460 0.68 +1.5 501,804 - ABZR87_RS18460 0.68 +0.3 501,804 - ABZR87_RS18460 0.68 -1.5 501,804 - ABZR87_RS18460 0.68 +0.1 501,804 - ABZR87_RS18460 0.68 +0.5 501,804 - ABZR87_RS18460 0.68 -0.7 501,847 + ABZR87_RS18460 0.78 +2.9 501,847 + ABZR87_RS18460 0.78 -0.8 501,847 + ABZR87_RS18460 0.78 -0.3 501,848 - ABZR87_RS18460 0.78 +1.1 501,897 + ABZR87_RS18460 0.89 -0.7 501,898 - ABZR87_RS18460 0.89 +0.6 501,943 - -0.5 502,080 + ABZR87_RS18465 0.22 -0.3 502,080 + ABZR87_RS18465 0.22 +0.6 502,168 + ABZR87_RS18465 0.37 -0.6 502,169 - ABZR87_RS18465 0.37 +1.0 502,324 + ABZR87_RS18465 0.64 +0.6 502,324 + ABZR87_RS18465 0.64 +0.1 502,325 - ABZR87_RS18465 0.65 -1.2 502,366 + ABZR87_RS18465 0.72 +1.4 502,367 - ABZR87_RS18465 0.72 -0.4 502,396 + ABZR87_RS18465 0.77 +0.1 502,397 - ABZR87_RS18465 0.77 +0.6 502,397 - ABZR87_RS18465 0.77 +0.2 502,585 + -1.0 502,585 + +0.1 502,586 - -0.8 502,670 + ABZR87_RS18470 0.25 -1.0 502,671 - ABZR87_RS18470 0.25 -1.7 502,764 + ABZR87_RS18470 0.47 -0.2 502,764 + ABZR87_RS18470 0.47 -1.1 502,764 + ABZR87_RS18470 0.47 -0.1 502,765 - ABZR87_RS18470 0.47 -0.1 502,766 + ABZR87_RS18470 0.47 +0.4 502,767 - ABZR87_RS18470 0.48 +0.1 502,780 - ABZR87_RS18470 0.51 -1.3 502,810 - ABZR87_RS18470 0.58 +0.8 502,810 - ABZR87_RS18470 0.58 -0.2 502,989 + -0.4 502,989 + +1.5 502,990 - -1.0 502,990 - -0.7 502,990 - +0.7 502,990 - -0.4 503,065 - -0.6 503,065 - -0.3 503,065 - +1.2 503,068 - +0.3 503,068 - -0.3 503,068 - +0.1 503,068 - -1.0 503,068 - -1.3 503,070 + -0.2 503,129 + -0.1 503,151 + -0.8 503,172 + +0.3 503,288 + ABZR87_RS18475 0.12 +1.0 503,288 + ABZR87_RS18475 0.12 +0.5 503,289 - ABZR87_RS18475 0.12 +0.2
Or see this region's nucleotide sequence