Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS16805

Experiment: root sample 4; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS16795 and ABZR87_RS16800 are separated by 171 nucleotidesABZR87_RS16800 and ABZR87_RS16805 are separated by 147 nucleotidesABZR87_RS16805 and ABZR87_RS16810 are separated by 70 nucleotides ABZR87_RS16795: ABZR87_RS16795 - VOC family protein, at 124,961 to 125,440 _RS16795 ABZR87_RS16800: ABZR87_RS16800 - RidA family protein, at 125,612 to 126,010 _RS16800 ABZR87_RS16805: ABZR87_RS16805 - LysR family transcriptional regulator, at 126,158 to 127,072 _RS16805 ABZR87_RS16810: ABZR87_RS16810 - DUF2242 domain-containing protein, at 127,143 to 127,997 _RS16810 Position (kb) 126 127 128Strain fitness (log2 ratio) -2 -1 0 1 2at 125.319 kb on + strand, within ABZR87_RS16795at 125.320 kb on - strand, within ABZR87_RS16795at 125.377 kb on - strand, within ABZR87_RS16795at 125.409 kb on + strandat 125.409 kb on + strandat 125.409 kb on + strandat 125.410 kb on - strandat 125.410 kb on - strandat 125.410 kb on - strandat 125.568 kb on + strandat 125.569 kb on - strandat 125.595 kb on + strandat 125.595 kb on + strandat 125.595 kb on + strandat 125.596 kb on - strandat 125.596 kb on - strandat 125.665 kb on - strand, within ABZR87_RS16800at 125.770 kb on + strand, within ABZR87_RS16800at 125.770 kb on + strand, within ABZR87_RS16800at 125.950 kb on - strand, within ABZR87_RS16800at 125.964 kb on + strand, within ABZR87_RS16800at 125.964 kb on + strand, within ABZR87_RS16800at 125.964 kb on + strand, within ABZR87_RS16800at 125.964 kb on + strand, within ABZR87_RS16800at 125.965 kb on - strand, within ABZR87_RS16800at 125.965 kb on - strand, within ABZR87_RS16800at 126.071 kb on + strandat 126.071 kb on + strandat 126.071 kb on + strandat 126.071 kb on + strandat 126.072 kb on - strandat 126.072 kb on - strandat 126.072 kb on - strandat 126.072 kb on - strandat 126.072 kb on - strandat 126.072 kb on - strandat 126.072 kb on - strandat 126.072 kb on - strandat 126.072 kb on - strandat 126.092 kb on + strandat 126.093 kb on - strandat 126.093 kb on - strandat 126.107 kb on + strandat 126.107 kb on + strandat 126.108 kb on - strandat 126.214 kb on + strandat 126.214 kb on + strandat 126.215 kb on - strandat 126.215 kb on - strandat 126.244 kb on + strandat 126.244 kb on + strandat 126.245 kb on - strandat 126.245 kb on - strandat 126.245 kb on - strandat 126.245 kb on - strandat 126.350 kb on + strand, within ABZR87_RS16805at 126.350 kb on + strand, within ABZR87_RS16805at 126.351 kb on - strand, within ABZR87_RS16805at 126.351 kb on - strand, within ABZR87_RS16805at 126.351 kb on - strand, within ABZR87_RS16805at 126.351 kb on - strand, within ABZR87_RS16805at 126.353 kb on + strand, within ABZR87_RS16805at 126.353 kb on + strand, within ABZR87_RS16805at 126.353 kb on + strand, within ABZR87_RS16805at 126.353 kb on + strand, within ABZR87_RS16805at 126.353 kb on + strand, within ABZR87_RS16805at 126.353 kb on + strand, within ABZR87_RS16805at 126.354 kb on - strand, within ABZR87_RS16805at 126.354 kb on - strand, within ABZR87_RS16805at 126.354 kb on - strand, within ABZR87_RS16805at 126.354 kb on - strand, within ABZR87_RS16805at 126.397 kb on + strand, within ABZR87_RS16805at 126.397 kb on + strand, within ABZR87_RS16805at 126.398 kb on - strand, within ABZR87_RS16805at 126.398 kb on - strand, within ABZR87_RS16805at 126.583 kb on - strand, within ABZR87_RS16805at 126.615 kb on + strand, within ABZR87_RS16805at 126.615 kb on + strand, within ABZR87_RS16805at 126.653 kb on + strand, within ABZR87_RS16805at 126.653 kb on + strand, within ABZR87_RS16805at 126.654 kb on - strand, within ABZR87_RS16805at 126.654 kb on - strand, within ABZR87_RS16805at 126.654 kb on - strand, within ABZR87_RS16805at 126.654 kb on - strand, within ABZR87_RS16805at 126.668 kb on + strand, within ABZR87_RS16805at 126.669 kb on - strand, within ABZR87_RS16805at 126.815 kb on + strand, within ABZR87_RS16805at 126.815 kb on + strand, within ABZR87_RS16805at 126.816 kb on - strand, within ABZR87_RS16805at 126.816 kb on - strand, within ABZR87_RS16805at 126.816 kb on - strand, within ABZR87_RS16805at 126.816 kb on - strand, within ABZR87_RS16805at 126.845 kb on + strand, within ABZR87_RS16805at 126.845 kb on + strand, within ABZR87_RS16805at 126.846 kb on - strand, within ABZR87_RS16805at 126.846 kb on - strand, within ABZR87_RS16805at 126.893 kb on + strand, within ABZR87_RS16805at 126.893 kb on + strand, within ABZR87_RS16805at 126.893 kb on + strand, within ABZR87_RS16805at 126.894 kb on - strand, within ABZR87_RS16805at 126.894 kb on - strand, within ABZR87_RS16805at 126.894 kb on - strand, within ABZR87_RS16805at 126.894 kb on - strand, within ABZR87_RS16805at 126.894 kb on - strand, within ABZR87_RS16805at 126.894 kb on - strand, within ABZR87_RS16805at 126.971 kb on + strand, within ABZR87_RS16805at 126.971 kb on + strand, within ABZR87_RS16805at 126.971 kb on + strand, within ABZR87_RS16805at 126.971 kb on + strand, within ABZR87_RS16805at 126.971 kb on + strand, within ABZR87_RS16805at 126.972 kb on - strand, within ABZR87_RS16805at 126.972 kb on - strand, within ABZR87_RS16805at 126.972 kb on - strand, within ABZR87_RS16805at 126.972 kb on - strand, within ABZR87_RS16805at 126.972 kb on - strand, within ABZR87_RS16805at 126.972 kb on - strand, within ABZR87_RS16805at 126.972 kb on - strand, within ABZR87_RS16805at 126.972 kb on - strand, within ABZR87_RS16805at 126.972 kb on - strand, within ABZR87_RS16805at 127.087 kb on - strandat 127.087 kb on - strandat 127.286 kb on + strand, within ABZR87_RS16810at 127.495 kb on + strand, within ABZR87_RS16810at 127.495 kb on + strand, within ABZR87_RS16810at 127.495 kb on + strand, within ABZR87_RS16810at 127.496 kb on - strand, within ABZR87_RS16810at 127.496 kb on - strand, within ABZR87_RS16810at 127.505 kb on - strand, within ABZR87_RS16810at 127.660 kb on + strand, within ABZR87_RS16810at 127.660 kb on + strand, within ABZR87_RS16810at 127.660 kb on + strand, within ABZR87_RS16810at 127.660 kb on + strand, within ABZR87_RS16810at 127.660 kb on + strand, within ABZR87_RS16810at 127.660 kb on + strand, within ABZR87_RS16810at 127.661 kb on - strand, within ABZR87_RS16810at 127.661 kb on - strand, within ABZR87_RS16810at 127.661 kb on - strand, within ABZR87_RS16810at 127.795 kb on + strand, within ABZR87_RS16810at 127.795 kb on + strand, within ABZR87_RS16810at 127.795 kb on + strand, within ABZR87_RS16810at 127.795 kb on + strand, within ABZR87_RS16810at 127.795 kb on + strand, within ABZR87_RS16810at 127.795 kb on + strand, within ABZR87_RS16810at 127.795 kb on + strand, within ABZR87_RS16810at 127.795 kb on + strand, within ABZR87_RS16810at 127.796 kb on - strand, within ABZR87_RS16810at 127.796 kb on - strand, within ABZR87_RS16810at 127.796 kb on - strand, within ABZR87_RS16810at 127.796 kb on - strand, within ABZR87_RS16810at 127.796 kb on - strand, within ABZR87_RS16810at 127.796 kb on - strand, within ABZR87_RS16810at 127.796 kb on - strand, within ABZR87_RS16810at 127.867 kb on + strand, within ABZR87_RS16810at 127.903 kb on + strand, within ABZR87_RS16810at 127.904 kb on - strand, within ABZR87_RS16810at 127.904 kb on - strand, within ABZR87_RS16810at 127.904 kb on - strand, within ABZR87_RS16810at 128.030 kb on + strandat 128.030 kb on + strandat 128.031 kb on - strandat 128.031 kb on - strandat 128.031 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 4; outgrowth in LB
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125,319 + ABZR87_RS16795 0.75 -0.6
125,320 - ABZR87_RS16795 0.75 -1.6
125,377 - ABZR87_RS16795 0.87 -0.9
125,409 + +1.1
125,409 + -0.5
125,409 + -1.6
125,410 - -0.4
125,410 - -0.1
125,410 - -1.8
125,568 + -1.0
125,569 - -0.1
125,595 + -1.1
125,595 + +0.0
125,595 + +1.3
125,596 - +2.6
125,596 - +2.0
125,665 - ABZR87_RS16800 0.13 -0.3
125,770 + ABZR87_RS16800 0.40 -1.1
125,770 + ABZR87_RS16800 0.40 +1.4
125,950 - ABZR87_RS16800 0.85 -1.2
125,964 + ABZR87_RS16800 0.88 -0.1
125,964 + ABZR87_RS16800 0.88 +0.4
125,964 + ABZR87_RS16800 0.88 -0.2
125,964 + ABZR87_RS16800 0.88 +0.3
125,965 - ABZR87_RS16800 0.88 +0.2
125,965 - ABZR87_RS16800 0.88 -2.2
126,071 + -1.6
126,071 + -1.0
126,071 + -1.1
126,071 + +0.2
126,072 - -2.3
126,072 - -0.1
126,072 - +0.5
126,072 - +0.5
126,072 - +0.7
126,072 - +0.5
126,072 - -0.9
126,072 - -1.0
126,072 - -0.8
126,092 + -1.3
126,093 - -2.6
126,093 - -0.1
126,107 + +0.2
126,107 + -0.2
126,108 - -0.9
126,214 + +0.0
126,214 + +2.2
126,215 - +0.6
126,215 - -0.8
126,244 + -0.2
126,244 + +0.2
126,245 - +0.4
126,245 - -1.0
126,245 - -0.5
126,245 - +0.4
126,350 + ABZR87_RS16805 0.21 +0.5
126,350 + ABZR87_RS16805 0.21 +0.1
126,351 - ABZR87_RS16805 0.21 -0.7
126,351 - ABZR87_RS16805 0.21 -0.6
126,351 - ABZR87_RS16805 0.21 -0.0
126,351 - ABZR87_RS16805 0.21 -0.4
126,353 + ABZR87_RS16805 0.21 -0.4
126,353 + ABZR87_RS16805 0.21 +1.8
126,353 + ABZR87_RS16805 0.21 -0.8
126,353 + ABZR87_RS16805 0.21 +0.5
126,353 + ABZR87_RS16805 0.21 +1.1
126,353 + ABZR87_RS16805 0.21 -0.9
126,354 - ABZR87_RS16805 0.21 +0.6
126,354 - ABZR87_RS16805 0.21 -0.3
126,354 - ABZR87_RS16805 0.21 +0.1
126,354 - ABZR87_RS16805 0.21 +0.2
126,397 + ABZR87_RS16805 0.26 -1.2
126,397 + ABZR87_RS16805 0.26 +1.8
126,398 - ABZR87_RS16805 0.26 -1.3
126,398 - ABZR87_RS16805 0.26 +0.3
126,583 - ABZR87_RS16805 0.46 +0.2
126,615 + ABZR87_RS16805 0.50 -1.0
126,615 + ABZR87_RS16805 0.50 -0.2
126,653 + ABZR87_RS16805 0.54 -0.5
126,653 + ABZR87_RS16805 0.54 +0.8
126,654 - ABZR87_RS16805 0.54 +0.2
126,654 - ABZR87_RS16805 0.54 -0.4
126,654 - ABZR87_RS16805 0.54 -0.4
126,654 - ABZR87_RS16805 0.54 +0.0
126,668 + ABZR87_RS16805 0.56 -0.0
126,669 - ABZR87_RS16805 0.56 +0.1
126,815 + ABZR87_RS16805 0.72 +0.2
126,815 + ABZR87_RS16805 0.72 -0.2
126,816 - ABZR87_RS16805 0.72 +0.7
126,816 - ABZR87_RS16805 0.72 -0.4
126,816 - ABZR87_RS16805 0.72 -0.6
126,816 - ABZR87_RS16805 0.72 +0.4
126,845 + ABZR87_RS16805 0.75 -0.7
126,845 + ABZR87_RS16805 0.75 -0.0
126,846 - ABZR87_RS16805 0.75 -0.0
126,846 - ABZR87_RS16805 0.75 -1.2
126,893 + ABZR87_RS16805 0.80 +1.0
126,893 + ABZR87_RS16805 0.80 -1.0
126,893 + ABZR87_RS16805 0.80 +0.6
126,894 - ABZR87_RS16805 0.80 -1.8
126,894 - ABZR87_RS16805 0.80 +0.4
126,894 - ABZR87_RS16805 0.80 -0.1
126,894 - ABZR87_RS16805 0.80 -0.7
126,894 - ABZR87_RS16805 0.80 -0.6
126,894 - ABZR87_RS16805 0.80 -0.6
126,971 + ABZR87_RS16805 0.89 +0.6
126,971 + ABZR87_RS16805 0.89 -0.8
126,971 + ABZR87_RS16805 0.89 +0.4
126,971 + ABZR87_RS16805 0.89 -1.2
126,971 + ABZR87_RS16805 0.89 -0.2
126,972 - ABZR87_RS16805 0.89 -0.8
126,972 - ABZR87_RS16805 0.89 -1.2
126,972 - ABZR87_RS16805 0.89 +0.4
126,972 - ABZR87_RS16805 0.89 -0.2
126,972 - ABZR87_RS16805 0.89 +1.2
126,972 - ABZR87_RS16805 0.89 +1.5
126,972 - ABZR87_RS16805 0.89 -0.3
126,972 - ABZR87_RS16805 0.89 -0.5
126,972 - ABZR87_RS16805 0.89 +0.5
127,087 - +0.6
127,087 - +1.2
127,286 + ABZR87_RS16810 0.17 -0.6
127,495 + ABZR87_RS16810 0.41 -1.0
127,495 + ABZR87_RS16810 0.41 +1.5
127,495 + ABZR87_RS16810 0.41 -0.3
127,496 - ABZR87_RS16810 0.41 -0.1
127,496 - ABZR87_RS16810 0.41 +0.3
127,505 - ABZR87_RS16810 0.42 +1.2
127,660 + ABZR87_RS16810 0.60 -0.0
127,660 + ABZR87_RS16810 0.60 -0.0
127,660 + ABZR87_RS16810 0.60 +0.4
127,660 + ABZR87_RS16810 0.60 -0.0
127,660 + ABZR87_RS16810 0.60 +0.2
127,660 + ABZR87_RS16810 0.60 +0.1
127,661 - ABZR87_RS16810 0.61 -0.5
127,661 - ABZR87_RS16810 0.61 -0.3
127,661 - ABZR87_RS16810 0.61 -0.9
127,795 + ABZR87_RS16810 0.76 +0.5
127,795 + ABZR87_RS16810 0.76 +1.3
127,795 + ABZR87_RS16810 0.76 +1.4
127,795 + ABZR87_RS16810 0.76 +1.1
127,795 + ABZR87_RS16810 0.76 +1.3
127,795 + ABZR87_RS16810 0.76 -0.3
127,795 + ABZR87_RS16810 0.76 +1.5
127,795 + ABZR87_RS16810 0.76 +1.2
127,796 - ABZR87_RS16810 0.76 -0.3
127,796 - ABZR87_RS16810 0.76 -0.7
127,796 - ABZR87_RS16810 0.76 -1.5
127,796 - ABZR87_RS16810 0.76 +0.1
127,796 - ABZR87_RS16810 0.76 -0.6
127,796 - ABZR87_RS16810 0.76 -0.4
127,796 - ABZR87_RS16810 0.76 -0.8
127,867 + ABZR87_RS16810 0.85 -0.6
127,903 + ABZR87_RS16810 0.89 -1.1
127,904 - ABZR87_RS16810 0.89 -0.4
127,904 - ABZR87_RS16810 0.89 +0.6
127,904 - ABZR87_RS16810 0.89 +0.4
128,030 + +0.2
128,030 + -0.9
128,031 - +0.9
128,031 - +0.3
128,031 - -1.5

Or see this region's nucleotide sequence