Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS12970

Experiment: root sample 4; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS12955 and ABZR87_RS12960 are separated by 96 nucleotidesABZR87_RS12960 and ABZR87_RS12965 overlap by 1 nucleotidesABZR87_RS12965 and ABZR87_RS12970 are separated by 14 nucleotidesABZR87_RS12970 and ABZR87_RS12975 overlap by 4 nucleotidesABZR87_RS12975 and ABZR87_RS12980 overlap by 4 nucleotides ABZR87_RS12955: ABZR87_RS12955 - terminase endonuclease subunit, at 2,756,961 to 2,757,671 _RS12955 ABZR87_RS12960: ABZR87_RS12960 - head completion/stabilization protein, at 2,757,768 to 2,758,247 _RS12960 ABZR87_RS12965: ABZR87_RS12965 - tail protein X, at 2,758,247 to 2,758,450 _RS12965 ABZR87_RS12970: ABZR87_RS12970 - putative holin, at 2,758,465 to 2,758,860 _RS12970 ABZR87_RS12975: ABZR87_RS12975 - phage holin family protein, at 2,758,857 to 2,759,168 _RS12975 ABZR87_RS12980: ABZR87_RS12980 - N-acetylmuramidase family protein, at 2,759,165 to 2,759,971 _RS12980 Position (kb) 2758 2759Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2757.489 kb on + strand, within ABZR87_RS12955at 2757.489 kb on + strand, within ABZR87_RS12955at 2757.490 kb on - strand, within ABZR87_RS12955at 2757.490 kb on - strand, within ABZR87_RS12955at 2757.490 kb on - strand, within ABZR87_RS12955at 2757.647 kb on + strandat 2757.648 kb on - strandat 2757.797 kb on - strandat 2757.874 kb on - strand, within ABZR87_RS12960at 2758.301 kb on + strand, within ABZR87_RS12965at 2758.302 kb on - strand, within ABZR87_RS12965at 2758.757 kb on + strand, within ABZR87_RS12970at 2758.758 kb on - strand, within ABZR87_RS12970at 2758.758 kb on - strand, within ABZR87_RS12970at 2758.968 kb on + strand, within ABZR87_RS12975at 2758.969 kb on - strand, within ABZR87_RS12975at 2758.969 kb on - strand, within ABZR87_RS12975at 2759.079 kb on + strand, within ABZR87_RS12975at 2759.079 kb on + strand, within ABZR87_RS12975at 2759.079 kb on + strand, within ABZR87_RS12975at 2759.080 kb on - strand, within ABZR87_RS12975at 2759.080 kb on - strand, within ABZR87_RS12975at 2759.261 kb on + strand, within ABZR87_RS12980at 2759.661 kb on + strand, within ABZR87_RS12980at 2759.661 kb on + strand, within ABZR87_RS12980at 2759.662 kb on - strand, within ABZR87_RS12980

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 4; outgrowth in LB
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2,757,489 + ABZR87_RS12955 0.74 -2.4
2,757,489 + ABZR87_RS12955 0.74 -1.6
2,757,490 - ABZR87_RS12955 0.74 -1.0
2,757,490 - ABZR87_RS12955 0.74 -1.4
2,757,490 - ABZR87_RS12955 0.74 -0.6
2,757,647 + -2.0
2,757,648 - -1.1
2,757,797 - -0.7
2,757,874 - ABZR87_RS12960 0.22 -1.3
2,758,301 + ABZR87_RS12965 0.26 -2.0
2,758,302 - ABZR87_RS12965 0.27 -1.3
2,758,757 + ABZR87_RS12970 0.74 -2.2
2,758,758 - ABZR87_RS12970 0.74 -1.4
2,758,758 - ABZR87_RS12970 0.74 -2.6
2,758,968 + ABZR87_RS12975 0.36 -3.3
2,758,969 - ABZR87_RS12975 0.36 -0.2
2,758,969 - ABZR87_RS12975 0.36 -0.3
2,759,079 + ABZR87_RS12975 0.71 -0.9
2,759,079 + ABZR87_RS12975 0.71 +1.9
2,759,079 + ABZR87_RS12975 0.71 -1.1
2,759,080 - ABZR87_RS12975 0.71 -1.6
2,759,080 - ABZR87_RS12975 0.71 -0.9
2,759,261 + ABZR87_RS12980 0.12 +0.7
2,759,661 + ABZR87_RS12980 0.61 -1.3
2,759,661 + ABZR87_RS12980 0.61 -0.8
2,759,662 - ABZR87_RS12980 0.62 -0.9

Or see this region's nucleotide sequence