Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS09170

Experiment: root sample 4; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	root sample 4; outgrowth in LB
1,939,530	-		ABZR87_RS09165	0.26	-0.5
1,939,538	+		ABZR87_RS09165	0.26	+0.4
1,939,539	-		ABZR87_RS09165	0.26	-0.6
1,939,574	+		ABZR87_RS09165	0.29	-0.0
1,939,574	+		ABZR87_RS09165	0.29	-0.3
1,939,575	-		ABZR87_RS09165	0.29	-0.3
1,939,575	-		ABZR87_RS09165	0.29	-0.3
1,939,575	-		ABZR87_RS09165	0.29	-0.3
1,939,575	-		ABZR87_RS09165	0.29	+1.2
1,939,581	-		ABZR87_RS09165	0.30	-0.2
1,939,581	-		ABZR87_RS09165	0.30	+0.1
1,939,700	+		ABZR87_RS09165	0.39	-1.5
1,939,700	+		ABZR87_RS09165	0.39	-0.1
1,939,701	-		ABZR87_RS09165	0.39	-0.8
1,939,745	+		ABZR87_RS09165	0.43	-1.1
1,939,745	+		ABZR87_RS09165	0.43	+0.9
1,939,746	-		ABZR87_RS09165	0.43	+0.3
1,939,746	-		ABZR87_RS09165	0.43	-0.5
1,939,783	+		ABZR87_RS09165	0.45	+0.7
1,939,784	-		ABZR87_RS09165	0.46	+0.3
1,939,784	-		ABZR87_RS09165	0.46	+0.4
1,939,784	-		ABZR87_RS09165	0.46	-0.1
1,939,784	-		ABZR87_RS09165	0.46	+2.3
1,939,784	-		ABZR87_RS09165	0.46	-0.6
1,939,838	+		ABZR87_RS09165	0.50	-1.2
1,939,937	+		ABZR87_RS09165	0.57	-0.4
1,939,937	+		ABZR87_RS09165	0.57	-0.7
1,939,937	+		ABZR87_RS09165	0.57	-0.0
1,939,937	+		ABZR87_RS09165	0.57	+1.0
1,939,937	+		ABZR87_RS09165	0.57	-0.6
1,939,938	-		ABZR87_RS09165	0.58	-2.7
1,940,051	+		ABZR87_RS09165	0.66	-0.1
1,940,052	-		ABZR87_RS09165	0.66	-0.2
1,940,052	-		ABZR87_RS09165	0.66	-0.1
1,940,180	+		ABZR87_RS09165	0.76	+0.5
1,940,181	-		ABZR87_RS09165	0.76	+0.3
1,940,181	-		ABZR87_RS09165	0.76	-1.0
1,940,197	+		ABZR87_RS09165	0.78	+0.4
1,940,197	+		ABZR87_RS09165	0.78	-0.7
1,940,197	+		ABZR87_RS09165	0.78	-0.0
1,940,197	+		ABZR87_RS09165	0.78	-0.6
1,940,198	-		ABZR87_RS09165	0.78	-1.0
1,940,198	-		ABZR87_RS09165	0.78	+1.5
1,940,198	-		ABZR87_RS09165	0.78	+1.3
1,940,237	+		ABZR87_RS09165	0.81	+0.7
1,940,237	+		ABZR87_RS09165	0.81	-1.1
1,940,237	+		ABZR87_RS09165	0.81	-0.9
1,940,237	+		ABZR87_RS09165	0.81	+0.3
1,940,237	+		ABZR87_RS09165	0.81	+1.3
1,940,238	-		ABZR87_RS09165	0.81	+1.8
1,940,238	-		ABZR87_RS09165	0.81	+0.2
1,940,240	+		ABZR87_RS09165	0.81	+0.9
1,940,241	-		ABZR87_RS09165	0.81	-1.4
1,940,281	+		ABZR87_RS09165	0.84	+0.8
1,940,281	+		ABZR87_RS09165	0.84	-1.4
1,940,371	-				+1.7
1,940,402	+				-2.1
1,940,402	+				-0.2
1,940,402	+				+0.6
1,940,402	+				-1.2
1,940,402	+				+2.1
1,940,402	+				+2.8
1,940,403	-				-0.3
1,940,403	-				-1.1
1,940,403	-				-0.0
1,940,403	-				+0.5
1,940,403	-				+0.2
1,940,403	-				-0.5
1,940,480	+				-1.4
1,940,481	-				+0.0
1,940,481	-				-0.7
1,940,481	-				+0.2
1,940,646	+				+0.7
1,940,646	+				-0.1
1,940,646	+				+0.3
1,940,647	-				-0.3
1,940,647	-				+0.3
1,940,747	+		ABZR87_RS09170	0.11	+0.4
1,940,841	+		ABZR87_RS09170	0.15	-0.0
1,940,841	+		ABZR87_RS09170	0.15	-0.1
1,940,842	-		ABZR87_RS09170	0.15	-0.7
1,940,842	-		ABZR87_RS09170	0.15	+0.9
1,940,842	-		ABZR87_RS09170	0.15	+0.2
1,940,842	-		ABZR87_RS09170	0.15	-0.0
1,940,842	-		ABZR87_RS09170	0.15	+0.7
1,940,842	-		ABZR87_RS09170	0.15	+2.5
1,940,856	+		ABZR87_RS09170	0.15	+0.3
1,940,856	+		ABZR87_RS09170	0.15	+0.8
1,940,857	-		ABZR87_RS09170	0.15	+0.6
1,940,857	-		ABZR87_RS09170	0.15	-0.9
1,940,857	-		ABZR87_RS09170	0.15	-0.7
1,940,857	-		ABZR87_RS09170	0.15	-0.4
1,940,911	+		ABZR87_RS09170	0.18	+0.3
1,940,911	+		ABZR87_RS09170	0.18	-2.5
1,941,424	+		ABZR87_RS09170	0.40	+0.2
1,941,425	-		ABZR87_RS09170	0.40	+0.6
1,941,425	-		ABZR87_RS09170	0.40	+0.7
1,941,711	+		ABZR87_RS09170	0.53	+0.7
1,941,711	+		ABZR87_RS09170	0.53	+0.3
1,941,711	+		ABZR87_RS09170	0.53	-1.6
1,941,711	+		ABZR87_RS09170	0.53	-1.2
1,941,712	-		ABZR87_RS09170	0.53	+2.7
1,941,712	-		ABZR87_RS09170	0.53	-0.6
1,941,712	-		ABZR87_RS09170	0.53	+0.4
1,941,712	-		ABZR87_RS09170	0.53	-0.1
1,941,887	+		ABZR87_RS09170	0.60	+0.8
1,942,062	+		ABZR87_RS09170	0.68	+2.0
1,942,062	+		ABZR87_RS09170	0.68	+0.3
1,942,062	+		ABZR87_RS09170	0.68	-0.4
1,942,062	+		ABZR87_RS09170	0.68	+0.0
1,942,063	-		ABZR87_RS09170	0.68	+2.2
1,942,063	-		ABZR87_RS09170	0.68	-0.5
1,942,063	-		ABZR87_RS09170	0.68	+1.3
1,942,063	-		ABZR87_RS09170	0.68	+1.0
1,942,063	-		ABZR87_RS09170	0.68	+0.3
1,942,063	-		ABZR87_RS09170	0.68	+0.3
1,942,063	-		ABZR87_RS09170	0.68	-0.3
1,942,093	-		ABZR87_RS09170	0.69	-0.1
1,942,093	-		ABZR87_RS09170	0.69	+0.7
1,942,218	+		ABZR87_RS09170	0.75	-0.7
1,942,219	-		ABZR87_RS09170	0.75	+0.6
1,942,219	-		ABZR87_RS09170	0.75	-0.3
1,942,219	-		ABZR87_RS09170	0.75	+0.7
1,942,219	-		ABZR87_RS09170	0.75	-0.5
1,942,319	+		ABZR87_RS09170	0.79	-0.1
1,942,320	-		ABZR87_RS09170	0.79	+1.5
1,942,587	+				+1.4
1,942,587	+				+1.5
1,942,587	+				-0.7
1,942,587	+				+0.5
1,942,587	+				-1.5
1,942,588	-				-1.9
1,942,588	-				+0.3
1,942,588	-				+0.1
1,942,588	-				-1.2
1,942,692	+				+0.3
1,942,692	+				-0.1
1,942,795	+				+0.2
1,942,795	+				-2.2
1,942,795	+				+0.4
1,942,795	+				-1.7
1,942,795	+				+1.0
1,942,795	+				-0.9
1,942,795	+				+0.4
1,942,795	+				+1.7
1,942,796	-				+0.5
1,942,796	-				-0.2
1,942,796	-				+0.1
1,942,796	-				+0.8
1,942,796	-				-1.4
1,942,796	-				-0.4
1,942,817	-				+0.1
1,942,817	-				-1.4
1,942,819	-				+1.3
1,942,848	+				+1.0
1,942,848	+				-0.2
1,942,848	+				+1.1
1,942,848	+				+1.7
1,942,848	+				+1.7
1,942,848	+				-0.4
1,942,848	+				+0.7
1,942,848	+				-0.6
1,942,848	+				+0.4
1,942,848	+				+0.3
1,942,848	+				+1.4
1,942,849	-				+0.4
1,942,849	-				-0.0
1,942,849	-				+0.6
1,942,849	-				-0.1
1,942,849	-				-0.1
1,942,849	-				+1.1
1,942,849	-				-0.7
1,942,849	-				+0.6
1,942,849	-				-0.7
1,942,850	+				+4.3
1,942,850	+				-0.1
1,942,850	+				+0.1
1,942,850	+				+1.9
1,942,850	+				+1.5
1,942,850	+				+0.1
1,942,850	+				-1.3
1,942,850	+				+0.4
1,942,850	+				+0.1
1,942,851	-				+0.4
1,942,851	-				+1.2
1,942,851	-				-0.9
1,942,851	-				-0.1
1,942,851	-				+0.4
1,942,851	-				+1.4
1,942,851	-				-0.3
1,942,852	+				+0.4
1,942,852	+				-0.2
1,942,852	+				+0.9
1,942,852	+				-0.8
1,942,852	+				+2.3
1,942,853	-				+0.1
1,942,853	-				-0.2
1,942,853	-				-0.7
1,942,853	-				+0.3
1,942,853	-				+1.4
1,942,893	+				+0.1
1,942,893	+				+0.5
1,942,893	+				+0.5
1,942,893	+				-0.2
1,942,894	-				-1.4
1,942,937	+				-1.8
1,942,937	+				+0.8
1,942,937	+				+0.4
1,942,937	+				+1.2
1,942,938	-				+0.4
1,942,970	+				+0.8
1,942,971	-				+0.5
1,942,971	-				-0.0
1,943,153	+		ABZR87_RS09175	0.30	+0.3
1,943,153	+		ABZR87_RS09175	0.30	-0.9
1,943,282	+		ABZR87_RS09175	0.44	-0.2
1,943,283	-		ABZR87_RS09175	0.44	+0.6
1,943,718	+				+0.5
1,943,718	+				+0.3
1,943,718	+				-1.7
1,943,718	+				+1.9
1,943,719	-				+1.0
1,943,719	-				+1.6