Experiment: root sample 4; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS06120 and ABZR87_RS06125 are separated by 185 nucleotides ABZR87_RS06125 and ABZR87_RS06130 are separated by 29 nucleotides ABZR87_RS06130 and ABZR87_RS06135 are separated by 131 nucleotides
ABZR87_RS06120: ABZR87_RS06120 - LysR family transcriptional regulator, at 1,306,032 to 1,306,964
_RS06120
ABZR87_RS06125: ABZR87_RS06125 - 3-hydroxybutyryl-CoA dehydrogenase, at 1,307,150 to 1,308,004
_RS06125
ABZR87_RS06130: ABZR87_RS06130 - thioesterase family protein, at 1,308,034 to 1,308,462
_RS06130
ABZR87_RS06135: ABZR87_RS06135 - PhzF family phenazine biosynthesis protein, at 1,308,594 to 1,309,451
_RS06135
Position (kb) 1307
1308
1309 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1306.183 kb on + strand, within ABZR87_RS06120 at 1306.183 kb on + strand, within ABZR87_RS06120 at 1306.184 kb on - strand, within ABZR87_RS06120 at 1306.184 kb on - strand, within ABZR87_RS06120 at 1306.277 kb on - strand, within ABZR87_RS06120 at 1306.277 kb on - strand, within ABZR87_RS06120 at 1306.391 kb on - strand, within ABZR87_RS06120 at 1306.442 kb on - strand, within ABZR87_RS06120 at 1306.453 kb on + strand, within ABZR87_RS06120 at 1306.453 kb on + strand, within ABZR87_RS06120 at 1306.453 kb on + strand, within ABZR87_RS06120 at 1306.454 kb on - strand, within ABZR87_RS06120 at 1306.613 kb on - strand, within ABZR87_RS06120 at 1306.683 kb on + strand, within ABZR87_RS06120 at 1306.683 kb on + strand, within ABZR87_RS06120 at 1306.684 kb on - strand, within ABZR87_RS06120 at 1306.684 kb on - strand, within ABZR87_RS06120 at 1306.684 kb on - strand, within ABZR87_RS06120 at 1306.684 kb on - strand, within ABZR87_RS06120 at 1306.684 kb on - strand, within ABZR87_RS06120 at 1306.684 kb on - strand, within ABZR87_RS06120 at 1306.768 kb on + strand, within ABZR87_RS06120 at 1306.768 kb on + strand, within ABZR87_RS06120 at 1306.768 kb on + strand, within ABZR87_RS06120 at 1306.769 kb on - strand, within ABZR87_RS06120 at 1306.769 kb on - strand, within ABZR87_RS06120 at 1306.769 kb on - strand, within ABZR87_RS06120 at 1306.769 kb on - strand, within ABZR87_RS06120 at 1306.771 kb on + strand, within ABZR87_RS06120 at 1306.771 kb on + strand, within ABZR87_RS06120 at 1306.771 kb on + strand, within ABZR87_RS06120 at 1306.771 kb on + strand, within ABZR87_RS06120 at 1306.771 kb on + strand, within ABZR87_RS06120 at 1306.771 kb on + strand, within ABZR87_RS06120 at 1306.771 kb on + strand, within ABZR87_RS06120 at 1306.772 kb on - strand, within ABZR87_RS06120 at 1306.772 kb on - strand, within ABZR87_RS06120 at 1306.772 kb on - strand, within ABZR87_RS06120 at 1306.772 kb on - strand, within ABZR87_RS06120 at 1306.772 kb on - strand, within ABZR87_RS06120 at 1306.836 kb on - strand, within ABZR87_RS06120 at 1307.017 kb on - strand at 1307.081 kb on + strand at 1307.130 kb on + strand at 1307.130 kb on + strand at 1307.130 kb on + strand at 1307.130 kb on + strand at 1307.130 kb on + strand at 1307.130 kb on + strand at 1307.130 kb on + strand at 1307.131 kb on - strand at 1307.131 kb on - strand at 1307.248 kb on + strand, within ABZR87_RS06125 at 1307.248 kb on + strand, within ABZR87_RS06125 at 1307.249 kb on - strand, within ABZR87_RS06125 at 1307.249 kb on - strand, within ABZR87_RS06125 at 1307.378 kb on + strand, within ABZR87_RS06125 at 1307.378 kb on + strand, within ABZR87_RS06125 at 1307.378 kb on + strand, within ABZR87_RS06125 at 1307.891 kb on + strand, within ABZR87_RS06125 at 1307.891 kb on + strand, within ABZR87_RS06125 at 1307.891 kb on + strand, within ABZR87_RS06125 at 1307.892 kb on - strand, within ABZR87_RS06125 at 1307.892 kb on - strand, within ABZR87_RS06125 at 1307.892 kb on - strand, within ABZR87_RS06125 at 1307.892 kb on - strand, within ABZR87_RS06125 at 1307.916 kb on - strand, within ABZR87_RS06125 at 1307.988 kb on - strand at 1307.988 kb on - strand at 1307.988 kb on - strand at 1307.988 kb on - strand at 1307.994 kb on - strand at 1308.043 kb on + strand at 1308.043 kb on + strand at 1308.043 kb on + strand at 1308.043 kb on + strand at 1308.043 kb on + strand at 1308.043 kb on + strand at 1308.043 kb on + strand at 1308.043 kb on + strand at 1308.043 kb on + strand at 1308.044 kb on - strand at 1308.044 kb on - strand at 1308.044 kb on - strand at 1308.044 kb on - strand at 1308.045 kb on + strand at 1308.045 kb on + strand at 1308.045 kb on + strand at 1308.045 kb on + strand at 1308.045 kb on + strand at 1308.045 kb on + strand at 1308.045 kb on + strand at 1308.046 kb on - strand at 1308.046 kb on - strand at 1308.046 kb on - strand at 1308.046 kb on - strand at 1308.046 kb on - strand at 1308.046 kb on - strand at 1308.046 kb on - strand at 1308.046 kb on - strand at 1308.046 kb on - strand at 1308.046 kb on - strand at 1308.046 kb on - strand at 1308.049 kb on + strand at 1308.049 kb on + strand at 1308.049 kb on + strand at 1308.049 kb on + strand at 1308.050 kb on - strand at 1308.050 kb on - strand at 1308.050 kb on - strand at 1308.050 kb on - strand at 1308.050 kb on - strand at 1308.103 kb on + strand, within ABZR87_RS06130 at 1308.103 kb on + strand, within ABZR87_RS06130 at 1308.104 kb on - strand, within ABZR87_RS06130 at 1308.104 kb on - strand, within ABZR87_RS06130 at 1308.112 kb on + strand, within ABZR87_RS06130 at 1308.217 kb on + strand, within ABZR87_RS06130 at 1308.217 kb on + strand, within ABZR87_RS06130 at 1308.438 kb on + strand at 1308.449 kb on - strand at 1308.460 kb on + strand at 1308.460 kb on + strand at 1308.604 kb on - strand at 1308.861 kb on + strand, within ABZR87_RS06135 at 1308.861 kb on + strand, within ABZR87_RS06135 at 1308.861 kb on + strand, within ABZR87_RS06135 at 1308.861 kb on + strand, within ABZR87_RS06135 at 1308.862 kb on - strand, within ABZR87_RS06135 at 1308.862 kb on - strand, within ABZR87_RS06135 at 1308.862 kb on - strand, within ABZR87_RS06135 at 1308.862 kb on - strand, within ABZR87_RS06135
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 4; outgrowth in LB remove 1,306,183 + ABZR87_RS06120 0.16 +2.2 1,306,183 + ABZR87_RS06120 0.16 +0.9 1,306,184 - ABZR87_RS06120 0.16 +0.3 1,306,184 - ABZR87_RS06120 0.16 -0.6 1,306,277 - ABZR87_RS06120 0.26 -0.3 1,306,277 - ABZR87_RS06120 0.26 +0.0 1,306,391 - ABZR87_RS06120 0.38 -2.3 1,306,442 - ABZR87_RS06120 0.44 -0.4 1,306,453 + ABZR87_RS06120 0.45 -0.6 1,306,453 + ABZR87_RS06120 0.45 -0.1 1,306,453 + ABZR87_RS06120 0.45 +0.3 1,306,454 - ABZR87_RS06120 0.45 -1.0 1,306,613 - ABZR87_RS06120 0.62 -0.8 1,306,683 + ABZR87_RS06120 0.70 -1.1 1,306,683 + ABZR87_RS06120 0.70 -1.1 1,306,684 - ABZR87_RS06120 0.70 +0.0 1,306,684 - ABZR87_RS06120 0.70 -1.0 1,306,684 - ABZR87_RS06120 0.70 -0.7 1,306,684 - ABZR87_RS06120 0.70 +0.3 1,306,684 - ABZR87_RS06120 0.70 +0.8 1,306,684 - ABZR87_RS06120 0.70 -0.4 1,306,768 + ABZR87_RS06120 0.79 +0.7 1,306,768 + ABZR87_RS06120 0.79 +0.9 1,306,768 + ABZR87_RS06120 0.79 -1.2 1,306,769 - ABZR87_RS06120 0.79 +0.5 1,306,769 - ABZR87_RS06120 0.79 -0.2 1,306,769 - ABZR87_RS06120 0.79 -0.8 1,306,769 - ABZR87_RS06120 0.79 -0.6 1,306,771 + ABZR87_RS06120 0.79 -0.2 1,306,771 + ABZR87_RS06120 0.79 +0.6 1,306,771 + ABZR87_RS06120 0.79 +0.8 1,306,771 + ABZR87_RS06120 0.79 +0.1 1,306,771 + ABZR87_RS06120 0.79 +0.4 1,306,771 + ABZR87_RS06120 0.79 -0.6 1,306,771 + ABZR87_RS06120 0.79 -0.5 1,306,772 - ABZR87_RS06120 0.79 +1.4 1,306,772 - ABZR87_RS06120 0.79 -0.6 1,306,772 - ABZR87_RS06120 0.79 -0.2 1,306,772 - ABZR87_RS06120 0.79 -1.3 1,306,772 - ABZR87_RS06120 0.79 +0.6 1,306,836 - ABZR87_RS06120 0.86 +0.2 1,307,017 - -2.5 1,307,081 + +1.2 1,307,130 + +0.4 1,307,130 + +0.0 1,307,130 + +1.3 1,307,130 + +0.9 1,307,130 + +0.5 1,307,130 + +3.3 1,307,130 + -0.1 1,307,131 - -2.3 1,307,131 - -0.9 1,307,248 + ABZR87_RS06125 0.11 +0.9 1,307,248 + ABZR87_RS06125 0.11 +0.2 1,307,249 - ABZR87_RS06125 0.12 +0.9 1,307,249 - ABZR87_RS06125 0.12 -0.8 1,307,378 + ABZR87_RS06125 0.27 +0.7 1,307,378 + ABZR87_RS06125 0.27 +1.0 1,307,378 + ABZR87_RS06125 0.27 +0.3 1,307,891 + ABZR87_RS06125 0.87 -1.1 1,307,891 + ABZR87_RS06125 0.87 -0.7 1,307,891 + ABZR87_RS06125 0.87 +0.1 1,307,892 - ABZR87_RS06125 0.87 +0.7 1,307,892 - ABZR87_RS06125 0.87 -2.6 1,307,892 - ABZR87_RS06125 0.87 +2.0 1,307,892 - ABZR87_RS06125 0.87 -1.2 1,307,916 - ABZR87_RS06125 0.90 +0.6 1,307,988 - -0.2 1,307,988 - -0.5 1,307,988 - -0.7 1,307,988 - -0.3 1,307,994 - -1.1 1,308,043 + +0.7 1,308,043 + -0.2 1,308,043 + -0.2 1,308,043 + -0.1 1,308,043 + -0.7 1,308,043 + +0.8 1,308,043 + +0.5 1,308,043 + -1.1 1,308,043 + -1.7 1,308,044 - +2.9 1,308,044 - +0.1 1,308,044 - -0.1 1,308,044 - -0.1 1,308,045 + +0.6 1,308,045 + +1.2 1,308,045 + -0.2 1,308,045 + +0.4 1,308,045 + -0.1 1,308,045 + -0.6 1,308,045 + -0.3 1,308,046 - -0.4 1,308,046 - -1.9 1,308,046 - +1.0 1,308,046 - -0.2 1,308,046 - +0.6 1,308,046 - -2.2 1,308,046 - -0.1 1,308,046 - -0.4 1,308,046 - +0.4 1,308,046 - +0.6 1,308,046 - -0.6 1,308,049 + -1.0 1,308,049 + -1.2 1,308,049 + -0.1 1,308,049 + +0.3 1,308,050 - +0.0 1,308,050 - -0.3 1,308,050 - +0.9 1,308,050 - -0.0 1,308,050 - -1.5 1,308,103 + ABZR87_RS06130 0.16 -1.1 1,308,103 + ABZR87_RS06130 0.16 -1.1 1,308,104 - ABZR87_RS06130 0.16 -0.9 1,308,104 - ABZR87_RS06130 0.16 -0.5 1,308,112 + ABZR87_RS06130 0.18 -0.5 1,308,217 + ABZR87_RS06130 0.43 -1.5 1,308,217 + ABZR87_RS06130 0.43 +0.3 1,308,438 + -0.2 1,308,449 - -1.6 1,308,460 + -0.1 1,308,460 + -0.8 1,308,604 - -0.6 1,308,861 + ABZR87_RS06135 0.31 +0.3 1,308,861 + ABZR87_RS06135 0.31 +1.0 1,308,861 + ABZR87_RS06135 0.31 -1.8 1,308,861 + ABZR87_RS06135 0.31 -1.0 1,308,862 - ABZR87_RS06135 0.31 +1.6 1,308,862 - ABZR87_RS06135 0.31 +0.3 1,308,862 - ABZR87_RS06135 0.31 +0.7 1,308,862 - ABZR87_RS06135 0.31 +3.0
Or see this region's nucleotide sequence