Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS05915

Experiment: root sample 4; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS05905 and ABZR87_RS05910 are separated by 127 nucleotidesABZR87_RS05910 and ABZR87_RS05915 are separated by 128 nucleotidesABZR87_RS05915 and ABZR87_RS05920 are separated by 114 nucleotides ABZR87_RS05905: ABZR87_RS05905 - FAD-dependent monooxygenase, at 1,262,901 to 1,264,367 _RS05905 ABZR87_RS05910: ABZR87_RS05910 - DUF1145 domain-containing protein, at 1,264,495 to 1,264,767 _RS05910 ABZR87_RS05915: ABZR87_RS05915 - patatin-like phospholipase family protein, at 1,264,896 to 1,265,816 _RS05915 ABZR87_RS05920: ABZR87_RS05920 - zinc-binding alcohol dehydrogenase family protein, at 1,265,931 to 1,266,944 _RS05920 Position (kb) 1264 1265 1266Strain fitness (log2 ratio) -2 -1 0 1 2at 1264.023 kb on + strand, within ABZR87_RS05905at 1264.023 kb on + strand, within ABZR87_RS05905at 1264.212 kb on + strand, within ABZR87_RS05905at 1264.409 kb on + strandat 1264.410 kb on - strandat 1264.534 kb on + strand, within ABZR87_RS05910at 1264.534 kb on + strand, within ABZR87_RS05910at 1264.534 kb on + strand, within ABZR87_RS05910at 1264.534 kb on + strand, within ABZR87_RS05910at 1264.535 kb on - strand, within ABZR87_RS05910at 1264.535 kb on - strand, within ABZR87_RS05910at 1264.535 kb on - strand, within ABZR87_RS05910at 1264.535 kb on - strand, within ABZR87_RS05910at 1264.535 kb on - strand, within ABZR87_RS05910at 1264.535 kb on - strand, within ABZR87_RS05910at 1264.535 kb on - strand, within ABZR87_RS05910at 1264.535 kb on - strand, within ABZR87_RS05910at 1264.555 kb on + strand, within ABZR87_RS05910at 1264.555 kb on + strand, within ABZR87_RS05910at 1264.555 kb on + strand, within ABZR87_RS05910at 1264.555 kb on + strand, within ABZR87_RS05910at 1264.555 kb on + strand, within ABZR87_RS05910at 1264.555 kb on + strand, within ABZR87_RS05910at 1264.555 kb on + strand, within ABZR87_RS05910at 1264.555 kb on + strand, within ABZR87_RS05910at 1264.555 kb on + strand, within ABZR87_RS05910at 1264.556 kb on - strand, within ABZR87_RS05910at 1264.556 kb on - strand, within ABZR87_RS05910at 1264.556 kb on - strand, within ABZR87_RS05910at 1264.556 kb on - strand, within ABZR87_RS05910at 1264.556 kb on - strand, within ABZR87_RS05910at 1264.556 kb on - strand, within ABZR87_RS05910at 1264.805 kb on + strandat 1264.805 kb on + strandat 1264.806 kb on - strandat 1264.806 kb on - strandat 1264.809 kb on - strandat 1264.809 kb on - strandat 1264.809 kb on - strandat 1264.831 kb on + strandat 1264.831 kb on + strandat 1264.831 kb on + strandat 1264.831 kb on + strandat 1264.831 kb on + strandat 1264.831 kb on + strandat 1264.831 kb on + strandat 1264.831 kb on + strandat 1264.832 kb on - strandat 1264.832 kb on - strandat 1264.832 kb on - strandat 1264.832 kb on - strandat 1264.832 kb on - strandat 1264.832 kb on - strandat 1264.832 kb on - strandat 1264.836 kb on + strandat 1264.836 kb on + strandat 1264.836 kb on + strandat 1264.836 kb on + strandat 1264.836 kb on + strandat 1264.836 kb on + strandat 1264.836 kb on + strandat 1264.837 kb on - strandat 1264.837 kb on - strandat 1264.837 kb on - strandat 1264.837 kb on - strandat 1264.837 kb on - strandat 1265.308 kb on + strand, within ABZR87_RS05915at 1265.308 kb on + strand, within ABZR87_RS05915at 1265.308 kb on + strand, within ABZR87_RS05915at 1265.308 kb on + strand, within ABZR87_RS05915at 1265.308 kb on + strand, within ABZR87_RS05915at 1265.309 kb on - strand, within ABZR87_RS05915at 1265.309 kb on - strand, within ABZR87_RS05915at 1265.309 kb on - strand, within ABZR87_RS05915at 1265.309 kb on - strand, within ABZR87_RS05915at 1265.378 kb on + strand, within ABZR87_RS05915at 1265.379 kb on - strand, within ABZR87_RS05915at 1265.467 kb on + strand, within ABZR87_RS05915at 1265.468 kb on - strand, within ABZR87_RS05915at 1265.603 kb on + strand, within ABZR87_RS05915at 1265.604 kb on - strand, within ABZR87_RS05915at 1265.649 kb on + strand, within ABZR87_RS05915at 1265.726 kb on + strandat 1265.881 kb on + strandat 1265.882 kb on - strandat 1265.882 kb on - strandat 1265.946 kb on + strandat 1265.946 kb on + strandat 1265.946 kb on + strandat 1265.946 kb on + strandat 1265.947 kb on - strandat 1265.949 kb on + strandat 1265.950 kb on - strandat 1266.196 kb on - strand, within ABZR87_RS05920at 1266.196 kb on - strand, within ABZR87_RS05920at 1266.196 kb on - strand, within ABZR87_RS05920at 1266.196 kb on - strand, within ABZR87_RS05920at 1266.196 kb on - strand, within ABZR87_RS05920at 1266.224 kb on + strand, within ABZR87_RS05920at 1266.224 kb on + strand, within ABZR87_RS05920at 1266.225 kb on - strand, within ABZR87_RS05920at 1266.430 kb on + strand, within ABZR87_RS05920at 1266.430 kb on + strand, within ABZR87_RS05920at 1266.430 kb on + strand, within ABZR87_RS05920at 1266.430 kb on + strand, within ABZR87_RS05920at 1266.431 kb on - strand, within ABZR87_RS05920at 1266.431 kb on - strand, within ABZR87_RS05920at 1266.431 kb on - strand, within ABZR87_RS05920at 1266.431 kb on - strand, within ABZR87_RS05920at 1266.431 kb on - strand, within ABZR87_RS05920at 1266.588 kb on + strand, within ABZR87_RS05920at 1266.588 kb on + strand, within ABZR87_RS05920at 1266.588 kb on + strand, within ABZR87_RS05920at 1266.588 kb on + strand, within ABZR87_RS05920at 1266.589 kb on - strand, within ABZR87_RS05920at 1266.589 kb on - strand, within ABZR87_RS05920at 1266.741 kb on + strand, within ABZR87_RS05920at 1266.741 kb on + strand, within ABZR87_RS05920at 1266.742 kb on - strand, within ABZR87_RS05920at 1266.742 kb on - strand, within ABZR87_RS05920at 1266.742 kb on - strand, within ABZR87_RS05920at 1266.742 kb on - strand, within ABZR87_RS05920at 1266.742 kb on - strand, within ABZR87_RS05920at 1266.742 kb on - strand, within ABZR87_RS05920at 1266.743 kb on - strand, within ABZR87_RS05920

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 4; outgrowth in LB
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1,264,023 + ABZR87_RS05905 0.76 -0.7
1,264,023 + ABZR87_RS05905 0.76 +1.3
1,264,212 + ABZR87_RS05905 0.89 +0.3
1,264,409 + -0.2
1,264,410 - +1.5
1,264,534 + ABZR87_RS05910 0.14 +0.6
1,264,534 + ABZR87_RS05910 0.14 -1.0
1,264,534 + ABZR87_RS05910 0.14 -1.5
1,264,534 + ABZR87_RS05910 0.14 -0.4
1,264,535 - ABZR87_RS05910 0.15 -0.3
1,264,535 - ABZR87_RS05910 0.15 +0.1
1,264,535 - ABZR87_RS05910 0.15 +1.1
1,264,535 - ABZR87_RS05910 0.15 -0.2
1,264,535 - ABZR87_RS05910 0.15 -0.2
1,264,535 - ABZR87_RS05910 0.15 -2.5
1,264,535 - ABZR87_RS05910 0.15 +0.6
1,264,535 - ABZR87_RS05910 0.15 -0.8
1,264,555 + ABZR87_RS05910 0.22 -0.8
1,264,555 + ABZR87_RS05910 0.22 +0.4
1,264,555 + ABZR87_RS05910 0.22 -1.4
1,264,555 + ABZR87_RS05910 0.22 +0.1
1,264,555 + ABZR87_RS05910 0.22 +0.2
1,264,555 + ABZR87_RS05910 0.22 +0.2
1,264,555 + ABZR87_RS05910 0.22 +0.5
1,264,555 + ABZR87_RS05910 0.22 +0.5
1,264,555 + ABZR87_RS05910 0.22 -1.0
1,264,556 - ABZR87_RS05910 0.22 -0.5
1,264,556 - ABZR87_RS05910 0.22 -0.0
1,264,556 - ABZR87_RS05910 0.22 -0.4
1,264,556 - ABZR87_RS05910 0.22 +0.9
1,264,556 - ABZR87_RS05910 0.22 -0.0
1,264,556 - ABZR87_RS05910 0.22 -0.6
1,264,805 + -1.8
1,264,805 + -0.9
1,264,806 - +0.5
1,264,806 - +0.1
1,264,809 - -1.2
1,264,809 - +0.3
1,264,809 - +2.0
1,264,831 + +0.9
1,264,831 + +0.2
1,264,831 + -0.7
1,264,831 + +0.0
1,264,831 + +0.4
1,264,831 + +0.4
1,264,831 + -0.1
1,264,831 + -0.9
1,264,832 - -2.0
1,264,832 - -1.2
1,264,832 - +0.3
1,264,832 - -1.7
1,264,832 - -0.8
1,264,832 - +0.2
1,264,832 - -0.2
1,264,836 + -0.5
1,264,836 + +0.9
1,264,836 + -1.2
1,264,836 + +0.4
1,264,836 + -0.3
1,264,836 + +1.0
1,264,836 + +0.8
1,264,837 - -0.9
1,264,837 - +1.9
1,264,837 - -0.1
1,264,837 - +0.1
1,264,837 - -0.9
1,265,308 + ABZR87_RS05915 0.45 +2.1
1,265,308 + ABZR87_RS05915 0.45 +0.3
1,265,308 + ABZR87_RS05915 0.45 -0.8
1,265,308 + ABZR87_RS05915 0.45 +0.4
1,265,308 + ABZR87_RS05915 0.45 -2.0
1,265,309 - ABZR87_RS05915 0.45 -1.8
1,265,309 - ABZR87_RS05915 0.45 -0.5
1,265,309 - ABZR87_RS05915 0.45 -0.3
1,265,309 - ABZR87_RS05915 0.45 -0.6
1,265,378 + ABZR87_RS05915 0.52 -0.5
1,265,379 - ABZR87_RS05915 0.52 +0.6
1,265,467 + ABZR87_RS05915 0.62 -0.9
1,265,468 - ABZR87_RS05915 0.62 -0.6
1,265,603 + ABZR87_RS05915 0.77 +1.0
1,265,604 - ABZR87_RS05915 0.77 -0.7
1,265,649 + ABZR87_RS05915 0.82 +1.6
1,265,726 + +0.8
1,265,881 + +0.8
1,265,882 - +1.3
1,265,882 - -1.2
1,265,946 + -0.7
1,265,946 + -0.0
1,265,946 + -0.3
1,265,946 + -1.5
1,265,947 - -1.4
1,265,949 + -1.2
1,265,950 - -1.1
1,266,196 - ABZR87_RS05920 0.26 -0.0
1,266,196 - ABZR87_RS05920 0.26 -0.6
1,266,196 - ABZR87_RS05920 0.26 -0.8
1,266,196 - ABZR87_RS05920 0.26 -0.5
1,266,196 - ABZR87_RS05920 0.26 -0.1
1,266,224 + ABZR87_RS05920 0.29 +0.7
1,266,224 + ABZR87_RS05920 0.29 -0.1
1,266,225 - ABZR87_RS05920 0.29 -0.0
1,266,430 + ABZR87_RS05920 0.49 -1.2
1,266,430 + ABZR87_RS05920 0.49 -0.8
1,266,430 + ABZR87_RS05920 0.49 -0.3
1,266,430 + ABZR87_RS05920 0.49 -0.2
1,266,431 - ABZR87_RS05920 0.49 +0.6
1,266,431 - ABZR87_RS05920 0.49 +0.1
1,266,431 - ABZR87_RS05920 0.49 -0.9
1,266,431 - ABZR87_RS05920 0.49 +0.1
1,266,431 - ABZR87_RS05920 0.49 -0.9
1,266,588 + ABZR87_RS05920 0.65 -0.7
1,266,588 + ABZR87_RS05920 0.65 -0.0
1,266,588 + ABZR87_RS05920 0.65 +0.2
1,266,588 + ABZR87_RS05920 0.65 -1.8
1,266,589 - ABZR87_RS05920 0.65 +0.9
1,266,589 - ABZR87_RS05920 0.65 -0.2
1,266,741 + ABZR87_RS05920 0.80 +0.5
1,266,741 + ABZR87_RS05920 0.80 +0.3
1,266,742 - ABZR87_RS05920 0.80 -1.1
1,266,742 - ABZR87_RS05920 0.80 +0.1
1,266,742 - ABZR87_RS05920 0.80 -1.1
1,266,742 - ABZR87_RS05920 0.80 -0.2
1,266,742 - ABZR87_RS05920 0.80 -0.9
1,266,742 - ABZR87_RS05920 0.80 -0.1
1,266,743 - ABZR87_RS05920 0.80 +0.7

Or see this region's nucleotide sequence