Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS05440

Experiment: root sample 4; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	root sample 4; outgrowth in LB
1,155,997	+		ABZR87_RS05430	0.51	+0.8
1,156,112	+				-1.0
1,156,112	+				+0.3
1,156,120	+				-0.1
1,156,120	+				+0.7
1,156,120	+				+0.6
1,156,120	+				-1.6
1,156,120	+				+0.2
1,156,120	+				-0.5
1,156,120	+				+0.2
1,156,120	+				-0.6
1,156,120	+				+0.9
1,156,120	+				-0.7
1,156,121	-				-0.2
1,156,121	-				-0.8
1,156,121	-				-1.0
1,156,121	-				+0.6
1,156,121	-				-0.3
1,156,121	-				+0.8
1,156,160	+				+0.6
1,156,160	+				+0.1
1,156,160	+				+0.1
1,156,229	+				-0.3
1,156,229	+				-0.2
1,156,230	-				+0.2
1,156,233	+				+1.1
1,156,233	+				-0.1
1,156,234	-				-1.0
1,156,234	-				+0.9
1,156,258	+				-0.2
1,156,258	+				+0.1
1,156,258	+				-0.8
1,156,258	+				+0.2
1,156,259	-				+0.0
1,156,259	-				-0.4
1,156,259	-				-0.3
1,156,259	-				+1.3
1,156,259	-				-0.9
1,156,259	-				-0.1
1,156,294	+				+0.7
1,156,294	+				-0.5
1,156,294	+				-1.0
1,156,298	+				+0.1
1,156,298	+				-2.5
1,156,298	+				-0.3
1,156,298	+				+0.3
1,156,298	+				+0.0
1,156,298	+				-1.5
1,156,298	+				+0.2
1,156,299	-				-0.9
1,156,299	-				+0.2
1,156,299	-				-0.6
1,156,299	-				-0.1
1,156,299	-				+1.3
1,156,299	-				+1.2
1,156,299	-				+1.1
1,156,299	-				-0.6
1,156,299	-				-0.0
1,156,299	-				-0.6
1,156,299	-				-1.4
1,156,299	-				+1.0
1,156,299	-				+0.3
1,156,299	-				+0.6
1,156,299	-				+1.6
1,156,341	+				-2.2
1,156,341	+				+0.0
1,156,342	-				+1.9
1,156,342	-				-0.5
1,156,342	-				-0.3
1,156,376	+				-0.1
1,156,376	+				+0.6
1,156,376	+				+0.3
1,156,377	-				+0.3
1,156,429	+				+0.6
1,156,429	+				+3.5
1,156,429	+				+0.0
1,156,429	+				-0.0
1,156,430	-				+0.1
1,156,430	-				+0.1
1,156,430	-				+2.1
1,156,472	-				-0.2
1,156,525	-		ABZR87_RS05435	0.13	-0.5
1,156,525	-		ABZR87_RS05435	0.13	+1.1
1,156,525	-		ABZR87_RS05435	0.13	-1.2
1,156,581	+		ABZR87_RS05435	0.24	+0.9
1,156,581	+		ABZR87_RS05435	0.24	+0.2
1,156,581	+		ABZR87_RS05435	0.24	+0.7
1,156,581	+		ABZR87_RS05435	0.24	-0.7
1,156,582	-		ABZR87_RS05435	0.24	+0.3
1,156,582	-		ABZR87_RS05435	0.24	-2.0
1,156,582	-		ABZR87_RS05435	0.24	-1.6
1,156,646	+		ABZR87_RS05435	0.37	-0.7
1,156,647	-		ABZR87_RS05435	0.38	+1.0
1,156,734	+		ABZR87_RS05435	0.55	-1.6
1,156,734	+		ABZR87_RS05435	0.55	+0.0
1,156,734	+		ABZR87_RS05435	0.55	-1.2
1,156,734	+		ABZR87_RS05435	0.55	-2.6
1,156,734	+		ABZR87_RS05435	0.55	-1.1
1,156,735	-		ABZR87_RS05435	0.55	+0.3
1,156,735	-		ABZR87_RS05435	0.55	+2.4
1,156,735	-		ABZR87_RS05435	0.55	-0.2
1,156,788	+		ABZR87_RS05435	0.66	-1.2
1,156,789	-		ABZR87_RS05435	0.66	-0.6
1,156,789	-		ABZR87_RS05435	0.66	+1.0
1,156,817	-		ABZR87_RS05435	0.72	-1.9
1,156,817	-		ABZR87_RS05435	0.72	-0.5
1,156,817	-		ABZR87_RS05435	0.72	-0.7
1,156,880	+		ABZR87_RS05435	0.85	-0.7
1,156,950	-				+0.2
1,156,950	-				+0.6
1,156,961	-				+0.1
1,157,015	+				-0.1
1,157,015	+				+0.2
1,157,015	+				-1.1
1,157,016	-				-0.9
1,157,016	-				+1.2
1,157,016	-				+2.0
1,157,016	-				-0.9
1,157,029	+				-1.1
1,157,030	-				+1.7
1,157,360	+		ABZR87_RS05440	0.22	+0.8
1,157,360	+		ABZR87_RS05440	0.22	-0.0
1,157,360	+		ABZR87_RS05440	0.22	-0.9
1,157,361	-		ABZR87_RS05440	0.22	-0.3
1,157,407	+		ABZR87_RS05440	0.25	+1.6
1,157,408	-		ABZR87_RS05440	0.25	+1.1
1,157,408	-		ABZR87_RS05440	0.25	-0.3
1,157,553	+		ABZR87_RS05440	0.34	+0.8
1,157,553	+		ABZR87_RS05440	0.34	+0.2
1,157,553	+		ABZR87_RS05440	0.34	-0.3
1,157,553	+		ABZR87_RS05440	0.34	-0.6
1,157,554	-		ABZR87_RS05440	0.34	+1.6
1,157,705	+		ABZR87_RS05440	0.43	+0.7
1,157,706	-		ABZR87_RS05440	0.43	+0.1
1,157,706	-		ABZR87_RS05440	0.43	-0.6
1,157,751	-		ABZR87_RS05440	0.45	+0.1
1,157,751	-		ABZR87_RS05440	0.45	+0.2
1,157,782	+		ABZR87_RS05440	0.47	-0.1
1,157,819	+		ABZR87_RS05440	0.49	+0.0
1,157,850	-		ABZR87_RS05440	0.51	+0.3
1,157,885	+		ABZR87_RS05440	0.53	-1.0
1,157,886	-		ABZR87_RS05440	0.53	-1.9
1,157,886	-		ABZR87_RS05440	0.53	-0.3
1,157,886	-		ABZR87_RS05440	0.53	+1.3
1,157,924	+		ABZR87_RS05440	0.56	-0.8
1,157,925	-		ABZR87_RS05440	0.56	-0.8
1,157,935	+		ABZR87_RS05440	0.56	-1.7
1,157,935	+		ABZR87_RS05440	0.56	+0.5
1,157,935	+		ABZR87_RS05440	0.56	+0.6
1,157,935	+		ABZR87_RS05440	0.56	-0.1
1,157,936	-		ABZR87_RS05440	0.56	-0.3
1,157,936	-		ABZR87_RS05440	0.56	-0.9
1,157,936	-		ABZR87_RS05440	0.56	+0.0
1,158,035	+		ABZR87_RS05440	0.62	+0.3
1,158,035	+		ABZR87_RS05440	0.62	+0.4
1,158,083	+		ABZR87_RS05440	0.65	-0.3
1,158,083	+		ABZR87_RS05440	0.65	+0.8
1,158,084	-		ABZR87_RS05440	0.65	-1.0
1,158,110	+		ABZR87_RS05440	0.67	+2.9
1,158,111	-		ABZR87_RS05440	0.67	+0.2
1,158,207	-		ABZR87_RS05440	0.72	+0.5
1,158,207	-		ABZR87_RS05440	0.72	+1.0
1,158,248	+		ABZR87_RS05440	0.75	-2.0
1,158,249	-		ABZR87_RS05440	0.75	-1.9
1,158,284	+		ABZR87_RS05440	0.77	-1.4
1,158,285	-		ABZR87_RS05440	0.77	+0.6
1,158,301	+		ABZR87_RS05440	0.78	+0.9
1,158,302	-		ABZR87_RS05440	0.78	-1.0
1,158,339	-		ABZR87_RS05440	0.80	-0.2
1,158,339	-		ABZR87_RS05440	0.80	-0.9
1,158,359	+		ABZR87_RS05440	0.81	+0.6
1,158,458	+		ABZR87_RS05440	0.87	-0.3
1,158,569	+				+0.3
1,158,569	+				-1.5
1,158,569	+				+0.2
1,158,569	+				-0.2
1,158,570	-				-0.5
1,158,570	-				-0.8
1,158,570	-				+0.9
1,158,570	-				+1.0
1,158,570	-				-0.2
1,158,584	+				+0.2
1,158,585	-				-0.1
1,158,585	-				+1.2
1,158,611	+				-0.4
1,158,612	-				-0.5
1,158,612	-				-0.1
1,158,674	+				+0.4
1,158,697	+				-0.4
1,158,697	+				+0.6
1,158,697	+				-0.4
1,158,697	+				+0.1
1,158,697	+				-1.2
1,158,697	+				-0.0
1,158,698	-				+0.4
1,158,698	-				+0.3
1,158,725	+				-0.1
1,158,726	-				+0.1
1,158,758	+				-0.0
1,158,779	+				+1.2
1,158,780	-				+1.5
1,158,780	-				-0.6
1,158,832	-				-0.1
1,158,832	-				+0.0
1,158,832	-				-1.3
1,158,832	-				+1.2
1,158,930	+		ABZR87_RS05445	0.33	-0.5
1,158,930	+		ABZR87_RS05445	0.33	-0.2
1,158,930	+		ABZR87_RS05445	0.33	+1.1
1,158,930	+		ABZR87_RS05445	0.33	-0.2
1,158,930	+		ABZR87_RS05445	0.33	+0.5
1,158,931	-		ABZR87_RS05445	0.34	+0.5
1,158,931	-		ABZR87_RS05445	0.34	-1.8
1,159,102	-				+0.4
1,159,107	+				+0.4
1,159,107	+				+1.4
1,159,107	+				-1.9
1,159,107	+				+0.3
1,159,135	+				-0.7
1,159,136	-				+0.1
1,159,136	-				-0.6
1,159,136	-				+0.0
1,159,136	-				-0.8
1,159,144	+				-1.4
1,159,145	-				+0.5
1,159,145	-				+1.2
1,159,181	+				-0.5
1,159,181	+				-0.2
1,159,181	+				-0.3
1,159,181	+				-0.3
1,159,181	+				+0.2
1,159,182	-				+0.0
1,159,182	-				-0.7
1,159,184	-				+0.0
1,159,184	-				-1.0
1,159,214	+				-0.1
1,159,215	-				-0.0
1,159,353	+				-0.8
1,159,373	+				-0.9
1,159,373	+				+0.5
1,159,398	+				-0.5
1,159,398	+				+3.3
1,159,398	+				-0.6
1,159,399	-				+0.6
1,159,399	-				+0.6
1,159,399	-				+1.2
1,159,399	-				+1.5
1,159,399	-				+0.0