Experiment: root sample 4; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04680 and ABZR87_RS04685 are separated by 96 nucleotides ABZR87_RS04685 and ABZR87_RS04690 are separated by 373 nucleotides
ABZR87_RS04680: ABZR87_RS04680 - nickel/cobalt efflux protein RcnA, at 977,594 to 978,721
_RS04680
ABZR87_RS04685: ABZR87_RS04685 - metal/formaldehyde-sensitive transcriptional repressor, at 978,818 to 979,090
_RS04685
ABZR87_RS04690: ABZR87_RS04690 - DMT family transporter, at 979,464 to 980,327
_RS04690
Position (kb) 978
979
980 Strain fitness (log2 ratio) -1
0
1
2
3 at 977.979 kb on + strand, within ABZR87_RS04680 at 977.980 kb on - strand, within ABZR87_RS04680 at 978.060 kb on + strand, within ABZR87_RS04680 at 978.060 kb on + strand, within ABZR87_RS04680 at 978.060 kb on + strand, within ABZR87_RS04680 at 978.060 kb on + strand, within ABZR87_RS04680 at 978.061 kb on - strand, within ABZR87_RS04680 at 978.102 kb on - strand, within ABZR87_RS04680 at 978.102 kb on - strand, within ABZR87_RS04680 at 978.456 kb on + strand, within ABZR87_RS04680 at 978.495 kb on + strand, within ABZR87_RS04680 at 978.495 kb on + strand, within ABZR87_RS04680 at 978.495 kb on + strand, within ABZR87_RS04680 at 978.495 kb on + strand, within ABZR87_RS04680 at 978.495 kb on + strand, within ABZR87_RS04680 at 978.533 kb on - strand, within ABZR87_RS04680 at 978.533 kb on - strand, within ABZR87_RS04680 at 978.754 kb on + strand at 978.769 kb on + strand at 978.770 kb on - strand at 978.770 kb on - strand at 978.770 kb on - strand at 978.826 kb on + strand at 978.826 kb on + strand at 978.826 kb on + strand at 978.827 kb on - strand at 978.827 kb on - strand at 978.827 kb on - strand at 978.838 kb on + strand at 978.839 kb on - strand at 979.095 kb on - strand at 979.130 kb on + strand at 979.307 kb on - strand at 979.510 kb on + strand at 979.510 kb on + strand at 979.510 kb on + strand at 979.511 kb on - strand at 979.598 kb on + strand, within ABZR87_RS04690 at 979.710 kb on + strand, within ABZR87_RS04690 at 979.722 kb on + strand, within ABZR87_RS04690 at 979.723 kb on - strand, within ABZR87_RS04690 at 979.723 kb on - strand, within ABZR87_RS04690 at 979.723 kb on - strand, within ABZR87_RS04690 at 979.723 kb on - strand, within ABZR87_RS04690 at 979.814 kb on + strand, within ABZR87_RS04690 at 979.814 kb on + strand, within ABZR87_RS04690 at 979.814 kb on + strand, within ABZR87_RS04690 at 979.814 kb on + strand, within ABZR87_RS04690 at 979.815 kb on - strand, within ABZR87_RS04690 at 979.815 kb on - strand, within ABZR87_RS04690 at 979.815 kb on - strand, within ABZR87_RS04690 at 979.920 kb on + strand, within ABZR87_RS04690 at 979.921 kb on - strand, within ABZR87_RS04690
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 4; outgrowth in LB remove 977,979 + ABZR87_RS04680 0.34 +0.3 977,980 - ABZR87_RS04680 0.34 -0.8 978,060 + ABZR87_RS04680 0.41 -0.8 978,060 + ABZR87_RS04680 0.41 +0.8 978,060 + ABZR87_RS04680 0.41 -0.5 978,060 + ABZR87_RS04680 0.41 -0.1 978,061 - ABZR87_RS04680 0.41 +0.0 978,102 - ABZR87_RS04680 0.45 +0.2 978,102 - ABZR87_RS04680 0.45 -0.3 978,456 + ABZR87_RS04680 0.76 +0.3 978,495 + ABZR87_RS04680 0.80 +0.2 978,495 + ABZR87_RS04680 0.80 -1.1 978,495 + ABZR87_RS04680 0.80 +0.7 978,495 + ABZR87_RS04680 0.80 +0.7 978,495 + ABZR87_RS04680 0.80 -0.0 978,533 - ABZR87_RS04680 0.83 -0.3 978,533 - ABZR87_RS04680 0.83 -0.6 978,754 + -0.3 978,769 + -1.5 978,770 - +0.2 978,770 - +0.5 978,770 - +0.3 978,826 + -1.7 978,826 + +1.8 978,826 + +3.7 978,827 - +3.7 978,827 - -0.3 978,827 - -0.0 978,838 + +0.3 978,839 - -0.0 979,095 - -0.2 979,130 + -1.0 979,307 - -0.0 979,510 + +0.0 979,510 + +0.2 979,510 + -0.4 979,511 - -0.2 979,598 + ABZR87_RS04690 0.16 +0.5 979,710 + ABZR87_RS04690 0.28 +0.7 979,722 + ABZR87_RS04690 0.30 -0.6 979,723 - ABZR87_RS04690 0.30 +0.8 979,723 - ABZR87_RS04690 0.30 -0.0 979,723 - ABZR87_RS04690 0.30 +0.8 979,723 - ABZR87_RS04690 0.30 +0.2 979,814 + ABZR87_RS04690 0.41 -0.4 979,814 + ABZR87_RS04690 0.41 -1.5 979,814 + ABZR87_RS04690 0.41 -0.9 979,814 + ABZR87_RS04690 0.41 -0.5 979,815 - ABZR87_RS04690 0.41 -0.2 979,815 - ABZR87_RS04690 0.41 +0.7 979,815 - ABZR87_RS04690 0.41 +1.3 979,920 + ABZR87_RS04690 0.53 +0.1 979,921 - ABZR87_RS04690 0.53 -1.0
Or see this region's nucleotide sequence