Experiment: root sample 4; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04620 and ABZR87_RS04625 are separated by 20 nucleotides ABZR87_RS04625 and ABZR87_RS04630 are separated by 78 nucleotides
ABZR87_RS04620: ABZR87_RS04620 - globin domain-containing protein, at 965,769 to 966,974
_RS04620
ABZR87_RS04625: ABZR87_RS04625 - NnrS family protein, at 966,995 to 968,209
_RS04625
ABZR87_RS04630: ABZR87_RS04630 - PLP-dependent aminotransferase family protein, at 968,288 to 969,745
_RS04630
Position (kb) 966
967
968
969 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 966.051 kb on + strand, within ABZR87_RS04620 at 966.145 kb on - strand, within ABZR87_RS04620 at 966.189 kb on + strand, within ABZR87_RS04620 at 966.190 kb on - strand, within ABZR87_RS04620 at 966.195 kb on + strand, within ABZR87_RS04620 at 966.196 kb on - strand, within ABZR87_RS04620 at 966.196 kb on - strand, within ABZR87_RS04620 at 966.327 kb on + strand, within ABZR87_RS04620 at 966.327 kb on + strand, within ABZR87_RS04620 at 966.327 kb on + strand, within ABZR87_RS04620 at 966.327 kb on + strand, within ABZR87_RS04620 at 966.327 kb on + strand, within ABZR87_RS04620 at 966.327 kb on + strand, within ABZR87_RS04620 at 966.327 kb on + strand, within ABZR87_RS04620 at 966.328 kb on - strand, within ABZR87_RS04620 at 966.378 kb on + strand, within ABZR87_RS04620 at 966.379 kb on - strand, within ABZR87_RS04620 at 966.379 kb on - strand, within ABZR87_RS04620 at 966.590 kb on + strand, within ABZR87_RS04620 at 966.591 kb on - strand, within ABZR87_RS04620 at 966.593 kb on + strand, within ABZR87_RS04620 at 966.593 kb on + strand, within ABZR87_RS04620 at 966.594 kb on - strand, within ABZR87_RS04620 at 966.594 kb on - strand, within ABZR87_RS04620 at 966.594 kb on - strand, within ABZR87_RS04620 at 966.594 kb on - strand, within ABZR87_RS04620 at 966.852 kb on + strand, within ABZR87_RS04620 at 966.852 kb on + strand, within ABZR87_RS04620 at 966.853 kb on - strand, within ABZR87_RS04620 at 966.853 kb on - strand, within ABZR87_RS04620 at 967.055 kb on + strand at 967.055 kb on + strand at 967.097 kb on + strand at 967.097 kb on + strand at 967.098 kb on - strand at 967.098 kb on - strand at 967.161 kb on + strand, within ABZR87_RS04625 at 967.162 kb on - strand, within ABZR87_RS04625 at 967.162 kb on - strand, within ABZR87_RS04625 at 967.162 kb on - strand, within ABZR87_RS04625 at 967.162 kb on - strand, within ABZR87_RS04625 at 967.162 kb on - strand, within ABZR87_RS04625 at 967.162 kb on - strand, within ABZR87_RS04625 at 967.459 kb on + strand, within ABZR87_RS04625 at 967.459 kb on + strand, within ABZR87_RS04625 at 967.459 kb on + strand, within ABZR87_RS04625 at 967.459 kb on + strand, within ABZR87_RS04625 at 967.460 kb on - strand, within ABZR87_RS04625 at 967.460 kb on - strand, within ABZR87_RS04625 at 967.463 kb on + strand, within ABZR87_RS04625 at 967.463 kb on + strand, within ABZR87_RS04625 at 967.627 kb on + strand, within ABZR87_RS04625 at 967.628 kb on - strand, within ABZR87_RS04625 at 967.628 kb on - strand, within ABZR87_RS04625 at 967.628 kb on - strand, within ABZR87_RS04625 at 967.628 kb on - strand, within ABZR87_RS04625 at 967.628 kb on - strand, within ABZR87_RS04625 at 967.755 kb on + strand, within ABZR87_RS04625 at 967.755 kb on + strand, within ABZR87_RS04625 at 967.756 kb on - strand, within ABZR87_RS04625 at 967.756 kb on - strand, within ABZR87_RS04625 at 967.756 kb on - strand, within ABZR87_RS04625 at 967.805 kb on - strand, within ABZR87_RS04625 at 967.853 kb on + strand, within ABZR87_RS04625 at 967.853 kb on + strand, within ABZR87_RS04625 at 967.853 kb on + strand, within ABZR87_RS04625 at 967.853 kb on + strand, within ABZR87_RS04625 at 967.854 kb on - strand, within ABZR87_RS04625 at 967.854 kb on - strand, within ABZR87_RS04625 at 967.854 kb on - strand, within ABZR87_RS04625 at 967.854 kb on - strand, within ABZR87_RS04625 at 967.854 kb on - strand, within ABZR87_RS04625 at 968.039 kb on + strand, within ABZR87_RS04625 at 968.040 kb on - strand, within ABZR87_RS04625 at 968.150 kb on + strand at 968.150 kb on + strand at 968.151 kb on - strand at 968.252 kb on + strand at 968.252 kb on + strand at 968.340 kb on - strand at 968.454 kb on + strand, within ABZR87_RS04630 at 968.455 kb on - strand, within ABZR87_RS04630 at 968.455 kb on - strand, within ABZR87_RS04630 at 968.460 kb on - strand, within ABZR87_RS04630 at 968.480 kb on + strand, within ABZR87_RS04630 at 968.481 kb on - strand, within ABZR87_RS04630 at 968.481 kb on - strand, within ABZR87_RS04630 at 968.481 kb on - strand, within ABZR87_RS04630 at 968.768 kb on + strand, within ABZR87_RS04630 at 968.769 kb on - strand, within ABZR87_RS04630 at 968.816 kb on + strand, within ABZR87_RS04630 at 968.951 kb on + strand, within ABZR87_RS04630 at 969.062 kb on + strand, within ABZR87_RS04630 at 969.062 kb on + strand, within ABZR87_RS04630 at 969.062 kb on + strand, within ABZR87_RS04630 at 969.062 kb on + strand, within ABZR87_RS04630 at 969.063 kb on - strand, within ABZR87_RS04630 at 969.063 kb on - strand, within ABZR87_RS04630 at 969.173 kb on + strand, within ABZR87_RS04630 at 969.173 kb on + strand, within ABZR87_RS04630 at 969.173 kb on + strand, within ABZR87_RS04630 at 969.174 kb on - strand, within ABZR87_RS04630 at 969.174 kb on - strand, within ABZR87_RS04630 at 969.174 kb on - strand, within ABZR87_RS04630
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 4; outgrowth in LB remove 966,051 + ABZR87_RS04620 0.23 -0.3 966,145 - ABZR87_RS04620 0.31 -0.3 966,189 + ABZR87_RS04620 0.35 +0.7 966,190 - ABZR87_RS04620 0.35 -0.3 966,195 + ABZR87_RS04620 0.35 +0.2 966,196 - ABZR87_RS04620 0.35 +0.7 966,196 - ABZR87_RS04620 0.35 -2.1 966,327 + ABZR87_RS04620 0.46 +0.2 966,327 + ABZR87_RS04620 0.46 -0.9 966,327 + ABZR87_RS04620 0.46 -0.0 966,327 + ABZR87_RS04620 0.46 +0.4 966,327 + ABZR87_RS04620 0.46 -0.9 966,327 + ABZR87_RS04620 0.46 -0.7 966,327 + ABZR87_RS04620 0.46 -2.6 966,328 - ABZR87_RS04620 0.46 -2.1 966,378 + ABZR87_RS04620 0.50 -2.3 966,379 - ABZR87_RS04620 0.51 +0.8 966,379 - ABZR87_RS04620 0.51 +0.4 966,590 + ABZR87_RS04620 0.68 -0.6 966,591 - ABZR87_RS04620 0.68 -0.6 966,593 + ABZR87_RS04620 0.68 -0.6 966,593 + ABZR87_RS04620 0.68 +2.0 966,594 - ABZR87_RS04620 0.68 +0.8 966,594 - ABZR87_RS04620 0.68 -0.5 966,594 - ABZR87_RS04620 0.68 -0.3 966,594 - ABZR87_RS04620 0.68 +1.3 966,852 + ABZR87_RS04620 0.90 +0.8 966,852 + ABZR87_RS04620 0.90 -1.1 966,853 - ABZR87_RS04620 0.90 +0.8 966,853 - ABZR87_RS04620 0.90 -0.6 967,055 + +0.0 967,055 + -1.0 967,097 + -1.5 967,097 + -0.5 967,098 - -1.3 967,098 - -0.6 967,161 + ABZR87_RS04625 0.14 -0.1 967,162 - ABZR87_RS04625 0.14 -0.8 967,162 - ABZR87_RS04625 0.14 -0.1 967,162 - ABZR87_RS04625 0.14 -0.5 967,162 - ABZR87_RS04625 0.14 +1.8 967,162 - ABZR87_RS04625 0.14 -0.5 967,162 - ABZR87_RS04625 0.14 -1.0 967,459 + ABZR87_RS04625 0.38 +0.2 967,459 + ABZR87_RS04625 0.38 -1.3 967,459 + ABZR87_RS04625 0.38 +0.4 967,459 + ABZR87_RS04625 0.38 -0.6 967,460 - ABZR87_RS04625 0.38 +3.2 967,460 - ABZR87_RS04625 0.38 -0.6 967,463 + ABZR87_RS04625 0.39 +0.1 967,463 + ABZR87_RS04625 0.39 -0.6 967,627 + ABZR87_RS04625 0.52 +0.7 967,628 - ABZR87_RS04625 0.52 +0.5 967,628 - ABZR87_RS04625 0.52 -1.2 967,628 - ABZR87_RS04625 0.52 +1.1 967,628 - ABZR87_RS04625 0.52 +0.5 967,628 - ABZR87_RS04625 0.52 +0.0 967,755 + ABZR87_RS04625 0.63 -0.6 967,755 + ABZR87_RS04625 0.63 -0.9 967,756 - ABZR87_RS04625 0.63 -1.8 967,756 - ABZR87_RS04625 0.63 -0.2 967,756 - ABZR87_RS04625 0.63 +0.2 967,805 - ABZR87_RS04625 0.67 +0.8 967,853 + ABZR87_RS04625 0.71 +1.7 967,853 + ABZR87_RS04625 0.71 -0.5 967,853 + ABZR87_RS04625 0.71 +0.5 967,853 + ABZR87_RS04625 0.71 -0.6 967,854 - ABZR87_RS04625 0.71 +0.0 967,854 - ABZR87_RS04625 0.71 -0.1 967,854 - ABZR87_RS04625 0.71 -0.1 967,854 - ABZR87_RS04625 0.71 +0.1 967,854 - ABZR87_RS04625 0.71 -0.8 968,039 + ABZR87_RS04625 0.86 -0.8 968,040 - ABZR87_RS04625 0.86 -1.0 968,150 + -0.3 968,150 + +0.1 968,151 - +1.2 968,252 + -0.5 968,252 + -0.0 968,340 - -1.3 968,454 + ABZR87_RS04630 0.11 +0.5 968,455 - ABZR87_RS04630 0.11 -0.0 968,455 - ABZR87_RS04630 0.11 +0.3 968,460 - ABZR87_RS04630 0.12 -1.3 968,480 + ABZR87_RS04630 0.13 +0.3 968,481 - ABZR87_RS04630 0.13 +0.4 968,481 - ABZR87_RS04630 0.13 +0.2 968,481 - ABZR87_RS04630 0.13 +1.1 968,768 + ABZR87_RS04630 0.33 +1.5 968,769 - ABZR87_RS04630 0.33 -0.3 968,816 + ABZR87_RS04630 0.36 -0.6 968,951 + ABZR87_RS04630 0.45 -0.4 969,062 + ABZR87_RS04630 0.53 +0.3 969,062 + ABZR87_RS04630 0.53 -0.1 969,062 + ABZR87_RS04630 0.53 -0.9 969,062 + ABZR87_RS04630 0.53 -1.3 969,063 - ABZR87_RS04630 0.53 -0.6 969,063 - ABZR87_RS04630 0.53 -0.7 969,173 + ABZR87_RS04630 0.61 -0.9 969,173 + ABZR87_RS04630 0.61 -0.1 969,173 + ABZR87_RS04630 0.61 +0.5 969,174 - ABZR87_RS04630 0.61 +1.0 969,174 - ABZR87_RS04630 0.61 +4.8 969,174 - ABZR87_RS04630 0.61 -2.8
Or see this region's nucleotide sequence