Experiment: root sample 4; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04380 and ABZR87_RS04385 are separated by 150 nucleotides ABZR87_RS04385 and ABZR87_RS04390 are separated by 78 nucleotides
ABZR87_RS04380: ABZR87_RS04380 - ABC transporter permease subunit, at 914,158 to 915,942
_RS04380
ABZR87_RS04385: ABZR87_RS04385 - AAA-associated domain-containing protein, at 916,093 to 917,466
_RS04385
ABZR87_RS04390: ABZR87_RS04390 - autotransporter outer membrane beta-barrel domain-containing protein, at 917,545 to 921,036
_RS04390
Position (kb) 916
917
918 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 915.157 kb on - strand, within ABZR87_RS04380 at 915.278 kb on + strand, within ABZR87_RS04380 at 915.278 kb on + strand, within ABZR87_RS04380 at 915.278 kb on + strand, within ABZR87_RS04380 at 915.279 kb on - strand, within ABZR87_RS04380 at 915.565 kb on + strand, within ABZR87_RS04380 at 915.565 kb on + strand, within ABZR87_RS04380 at 915.565 kb on + strand, within ABZR87_RS04380 at 915.566 kb on - strand, within ABZR87_RS04380 at 915.566 kb on - strand, within ABZR87_RS04380 at 915.566 kb on - strand, within ABZR87_RS04380 at 915.566 kb on - strand, within ABZR87_RS04380 at 915.754 kb on + strand, within ABZR87_RS04380 at 915.754 kb on + strand, within ABZR87_RS04380 at 915.754 kb on + strand, within ABZR87_RS04380 at 915.754 kb on + strand, within ABZR87_RS04380 at 915.755 kb on - strand, within ABZR87_RS04380 at 915.755 kb on - strand, within ABZR87_RS04380 at 915.755 kb on - strand, within ABZR87_RS04380 at 915.755 kb on - strand, within ABZR87_RS04380 at 915.755 kb on - strand, within ABZR87_RS04380 at 915.755 kb on - strand, within ABZR87_RS04380 at 915.802 kb on + strand at 915.803 kb on - strand at 915.803 kb on - strand at 915.803 kb on - strand at 915.803 kb on - strand at 915.803 kb on - strand at 915.803 kb on - strand at 915.910 kb on + strand at 915.917 kb on + strand at 915.917 kb on + strand at 915.917 kb on + strand at 915.918 kb on - strand at 915.940 kb on + strand at 915.940 kb on + strand at 915.941 kb on - strand at 915.941 kb on - strand at 915.960 kb on + strand at 915.960 kb on + strand at 915.961 kb on - strand at 915.998 kb on + strand at 916.006 kb on + strand at 916.007 kb on - strand at 916.007 kb on - strand at 916.007 kb on - strand at 916.064 kb on + strand at 916.064 kb on + strand at 916.065 kb on - strand at 916.065 kb on - strand at 916.074 kb on + strand at 916.074 kb on + strand at 916.074 kb on + strand at 916.074 kb on + strand at 916.075 kb on - strand at 916.075 kb on - strand at 916.075 kb on - strand at 916.075 kb on - strand at 916.078 kb on + strand at 916.078 kb on + strand at 916.078 kb on + strand at 916.079 kb on - strand at 916.098 kb on + strand at 916.340 kb on - strand, within ABZR87_RS04385 at 916.340 kb on - strand, within ABZR87_RS04385 at 916.861 kb on + strand, within ABZR87_RS04385 at 916.861 kb on + strand, within ABZR87_RS04385 at 916.861 kb on + strand, within ABZR87_RS04385 at 916.861 kb on + strand, within ABZR87_RS04385 at 916.861 kb on + strand, within ABZR87_RS04385 at 916.861 kb on + strand, within ABZR87_RS04385 at 917.146 kb on + strand, within ABZR87_RS04385 at 917.146 kb on + strand, within ABZR87_RS04385 at 917.146 kb on + strand, within ABZR87_RS04385 at 917.146 kb on + strand, within ABZR87_RS04385 at 917.146 kb on + strand, within ABZR87_RS04385 at 917.146 kb on + strand, within ABZR87_RS04385 at 917.146 kb on + strand, within ABZR87_RS04385 at 917.147 kb on - strand, within ABZR87_RS04385 at 917.147 kb on - strand, within ABZR87_RS04385 at 917.147 kb on - strand, within ABZR87_RS04385 at 917.277 kb on - strand, within ABZR87_RS04385 at 917.277 kb on - strand, within ABZR87_RS04385 at 917.296 kb on + strand, within ABZR87_RS04385 at 917.296 kb on + strand, within ABZR87_RS04385 at 917.296 kb on + strand, within ABZR87_RS04385 at 917.297 kb on - strand, within ABZR87_RS04385 at 917.297 kb on - strand, within ABZR87_RS04385 at 917.297 kb on - strand, within ABZR87_RS04385 at 917.354 kb on - strand at 917.354 kb on - strand at 917.365 kb on + strand at 917.365 kb on + strand at 917.365 kb on + strand at 917.365 kb on + strand at 917.365 kb on + strand at 917.365 kb on + strand at 917.366 kb on - strand at 917.366 kb on - strand at 917.366 kb on - strand at 917.366 kb on - strand at 917.366 kb on - strand at 917.371 kb on + strand at 917.371 kb on + strand at 917.371 kb on + strand at 917.372 kb on - strand at 917.372 kb on - strand at 917.372 kb on - strand at 917.377 kb on + strand at 917.377 kb on + strand at 917.377 kb on + strand at 917.378 kb on - strand at 917.378 kb on - strand at 917.378 kb on - strand at 917.378 kb on - strand at 917.378 kb on - strand at 917.464 kb on + strand at 917.465 kb on - strand at 917.627 kb on + strand at 917.627 kb on + strand at 917.627 kb on + strand at 917.628 kb on - strand at 917.628 kb on - strand at 917.924 kb on + strand, within ABZR87_RS04390 at 917.924 kb on + strand, within ABZR87_RS04390 at 917.924 kb on + strand, within ABZR87_RS04390 at 917.925 kb on - strand, within ABZR87_RS04390 at 917.925 kb on - strand, within ABZR87_RS04390 at 917.925 kb on - strand, within ABZR87_RS04390 at 918.002 kb on + strand, within ABZR87_RS04390 at 918.059 kb on + strand, within ABZR87_RS04390 at 918.059 kb on + strand, within ABZR87_RS04390 at 918.060 kb on - strand, within ABZR87_RS04390 at 918.090 kb on - strand, within ABZR87_RS04390 at 918.119 kb on + strand, within ABZR87_RS04390 at 918.119 kb on + strand, within ABZR87_RS04390 at 918.120 kb on - strand, within ABZR87_RS04390 at 918.212 kb on + strand, within ABZR87_RS04390 at 918.212 kb on + strand, within ABZR87_RS04390 at 918.257 kb on + strand, within ABZR87_RS04390 at 918.258 kb on - strand, within ABZR87_RS04390 at 918.293 kb on + strand, within ABZR87_RS04390 at 918.293 kb on + strand, within ABZR87_RS04390 at 918.424 kb on - strand, within ABZR87_RS04390 at 918.453 kb on + strand, within ABZR87_RS04390 at 918.454 kb on - strand, within ABZR87_RS04390
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 4; outgrowth in LB remove 915,157 - ABZR87_RS04380 0.56 -1.1 915,278 + ABZR87_RS04380 0.63 +1.7 915,278 + ABZR87_RS04380 0.63 +1.9 915,278 + ABZR87_RS04380 0.63 +0.5 915,279 - ABZR87_RS04380 0.63 +0.4 915,565 + ABZR87_RS04380 0.79 +0.4 915,565 + ABZR87_RS04380 0.79 +0.9 915,565 + ABZR87_RS04380 0.79 +0.3 915,566 - ABZR87_RS04380 0.79 -0.4 915,566 - ABZR87_RS04380 0.79 +0.1 915,566 - ABZR87_RS04380 0.79 +0.6 915,566 - ABZR87_RS04380 0.79 -1.8 915,754 + ABZR87_RS04380 0.89 -1.5 915,754 + ABZR87_RS04380 0.89 +0.4 915,754 + ABZR87_RS04380 0.89 +0.1 915,754 + ABZR87_RS04380 0.89 -0.3 915,755 - ABZR87_RS04380 0.89 +0.6 915,755 - ABZR87_RS04380 0.89 -0.9 915,755 - ABZR87_RS04380 0.89 -1.1 915,755 - ABZR87_RS04380 0.89 -1.0 915,755 - ABZR87_RS04380 0.89 -0.6 915,755 - ABZR87_RS04380 0.89 -0.1 915,802 + +0.9 915,803 - -0.5 915,803 - +0.4 915,803 - +0.3 915,803 - -0.5 915,803 - +0.4 915,803 - +0.1 915,910 + +1.9 915,917 + -0.2 915,917 + -1.1 915,917 + +0.1 915,918 - +0.4 915,940 + +1.1 915,940 + +0.1 915,941 - +0.5 915,941 - -0.7 915,960 + -0.7 915,960 + +1.1 915,961 - +0.0 915,998 + +0.3 916,006 + +2.5 916,007 - -0.7 916,007 - +0.8 916,007 - -1.0 916,064 + -0.4 916,064 + -1.1 916,065 - -2.4 916,065 - -0.0 916,074 + +0.4 916,074 + -0.3 916,074 + +0.4 916,074 + +0.7 916,075 - -0.5 916,075 - +0.2 916,075 - -1.1 916,075 - +0.1 916,078 + +0.0 916,078 + -0.3 916,078 + -0.9 916,079 - +1.1 916,098 + -1.0 916,340 - ABZR87_RS04385 0.18 +1.2 916,340 - ABZR87_RS04385 0.18 -0.9 916,861 + ABZR87_RS04385 0.56 +0.9 916,861 + ABZR87_RS04385 0.56 -0.3 916,861 + ABZR87_RS04385 0.56 -0.3 916,861 + ABZR87_RS04385 0.56 -1.0 916,861 + ABZR87_RS04385 0.56 +0.1 916,861 + ABZR87_RS04385 0.56 -0.2 917,146 + ABZR87_RS04385 0.77 +0.2 917,146 + ABZR87_RS04385 0.77 -0.1 917,146 + ABZR87_RS04385 0.77 +0.1 917,146 + ABZR87_RS04385 0.77 -0.2 917,146 + ABZR87_RS04385 0.77 +1.6 917,146 + ABZR87_RS04385 0.77 -1.5 917,146 + ABZR87_RS04385 0.77 -0.1 917,147 - ABZR87_RS04385 0.77 -0.5 917,147 - ABZR87_RS04385 0.77 -1.0 917,147 - ABZR87_RS04385 0.77 +0.6 917,277 - ABZR87_RS04385 0.86 -0.1 917,277 - ABZR87_RS04385 0.86 +0.2 917,296 + ABZR87_RS04385 0.88 -0.3 917,296 + ABZR87_RS04385 0.88 -1.5 917,296 + ABZR87_RS04385 0.88 -0.6 917,297 - ABZR87_RS04385 0.88 +0.5 917,297 - ABZR87_RS04385 0.88 +0.2 917,297 - ABZR87_RS04385 0.88 -1.0 917,354 - -0.1 917,354 - -0.2 917,365 + +0.7 917,365 + -0.1 917,365 + -0.4 917,365 + -0.8 917,365 + -0.6 917,365 + +0.3 917,366 - +0.2 917,366 - -0.7 917,366 - +0.8 917,366 - +0.9 917,366 - -0.6 917,371 + +0.6 917,371 + -0.0 917,371 + -1.1 917,372 - +0.5 917,372 - -0.8 917,372 - -0.9 917,377 + -0.1 917,377 + +0.7 917,377 + +0.5 917,378 - +0.1 917,378 - +0.9 917,378 - -0.3 917,378 - -0.5 917,378 - -0.4 917,464 + -1.1 917,465 - +2.0 917,627 + +0.9 917,627 + -1.1 917,627 + -0.6 917,628 - -0.9 917,628 - -1.0 917,924 + ABZR87_RS04390 0.11 -0.5 917,924 + ABZR87_RS04390 0.11 +0.8 917,924 + ABZR87_RS04390 0.11 +4.7 917,925 - ABZR87_RS04390 0.11 +0.7 917,925 - ABZR87_RS04390 0.11 +0.2 917,925 - ABZR87_RS04390 0.11 -0.1 918,002 + ABZR87_RS04390 0.13 +1.3 918,059 + ABZR87_RS04390 0.15 -0.3 918,059 + ABZR87_RS04390 0.15 +0.1 918,060 - ABZR87_RS04390 0.15 -0.2 918,090 - ABZR87_RS04390 0.16 +0.3 918,119 + ABZR87_RS04390 0.16 +0.5 918,119 + ABZR87_RS04390 0.16 +0.4 918,120 - ABZR87_RS04390 0.16 -1.5 918,212 + ABZR87_RS04390 0.19 +1.4 918,212 + ABZR87_RS04390 0.19 +0.1 918,257 + ABZR87_RS04390 0.20 -0.1 918,258 - ABZR87_RS04390 0.20 +0.5 918,293 + ABZR87_RS04390 0.21 -0.2 918,293 + ABZR87_RS04390 0.21 -0.6 918,424 - ABZR87_RS04390 0.25 +0.1 918,453 + ABZR87_RS04390 0.26 -0.4 918,454 - ABZR87_RS04390 0.26 -0.3
Or see this region's nucleotide sequence