Experiment: root sample 4; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03090 and ABZR87_RS03095 are separated by 29 nucleotides ABZR87_RS03095 and ABZR87_RS03100 are separated by 3 nucleotides ABZR87_RS03100 and ABZR87_RS03105 are separated by 202 nucleotides
ABZR87_RS03090: ABZR87_RS03090 - helix-turn-helix transcriptional regulator, at 650,596 to 651,393
_RS03090
ABZR87_RS03095: ABZR87_RS03095 - ATP-binding protein, at 651,423 to 652,763
_RS03095
ABZR87_RS03100: ABZR87_RS03100 - response regulator transcription factor, at 652,767 to 653,498
_RS03100
ABZR87_RS03105: ABZR87_RS03105 - MipA/OmpV family protein, at 653,701 to 654,498
_RS03105
Position (kb) 651
652
653 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 650.481 kb on + strand at 650.481 kb on + strand at 650.481 kb on + strand at 650.482 kb on - strand at 650.482 kb on - strand at 650.482 kb on - strand at 650.482 kb on - strand at 650.482 kb on - strand at 650.562 kb on - strand at 650.562 kb on - strand at 650.562 kb on - strand at 650.668 kb on + strand at 650.668 kb on + strand at 650.668 kb on + strand at 650.668 kb on + strand at 650.668 kb on + strand at 650.669 kb on - strand at 650.669 kb on - strand at 650.734 kb on + strand, within ABZR87_RS03090 at 650.734 kb on + strand, within ABZR87_RS03090 at 650.734 kb on + strand, within ABZR87_RS03090 at 650.734 kb on + strand, within ABZR87_RS03090 at 650.735 kb on - strand, within ABZR87_RS03090 at 650.735 kb on - strand, within ABZR87_RS03090 at 650.735 kb on - strand, within ABZR87_RS03090 at 650.735 kb on - strand, within ABZR87_RS03090 at 650.735 kb on - strand, within ABZR87_RS03090 at 650.735 kb on - strand, within ABZR87_RS03090 at 650.736 kb on + strand, within ABZR87_RS03090 at 650.736 kb on + strand, within ABZR87_RS03090 at 650.737 kb on - strand, within ABZR87_RS03090 at 650.824 kb on + strand, within ABZR87_RS03090 at 650.862 kb on + strand, within ABZR87_RS03090 at 650.862 kb on + strand, within ABZR87_RS03090 at 650.862 kb on + strand, within ABZR87_RS03090 at 650.862 kb on + strand, within ABZR87_RS03090 at 650.863 kb on - strand, within ABZR87_RS03090 at 650.863 kb on - strand, within ABZR87_RS03090 at 650.863 kb on - strand, within ABZR87_RS03090 at 650.863 kb on - strand, within ABZR87_RS03090 at 650.869 kb on + strand, within ABZR87_RS03090 at 650.869 kb on + strand, within ABZR87_RS03090 at 650.869 kb on + strand, within ABZR87_RS03090 at 650.870 kb on - strand, within ABZR87_RS03090 at 650.870 kb on - strand, within ABZR87_RS03090 at 650.870 kb on - strand, within ABZR87_RS03090 at 650.870 kb on - strand, within ABZR87_RS03090 at 650.870 kb on - strand, within ABZR87_RS03090 at 650.870 kb on - strand, within ABZR87_RS03090 at 650.870 kb on - strand, within ABZR87_RS03090 at 650.870 kb on - strand, within ABZR87_RS03090 at 650.870 kb on - strand, within ABZR87_RS03090 at 650.870 kb on - strand, within ABZR87_RS03090 at 650.870 kb on - strand, within ABZR87_RS03090 at 651.298 kb on + strand, within ABZR87_RS03090 at 651.298 kb on + strand, within ABZR87_RS03090 at 651.299 kb on - strand, within ABZR87_RS03090 at 651.299 kb on - strand, within ABZR87_RS03090 at 651.299 kb on - strand, within ABZR87_RS03090 at 651.299 kb on - strand, within ABZR87_RS03090 at 651.400 kb on + strand at 651.400 kb on + strand at 651.401 kb on - strand at 651.424 kb on + strand at 651.425 kb on - strand at 651.524 kb on - strand at 651.704 kb on + strand, within ABZR87_RS03095 at 651.704 kb on + strand, within ABZR87_RS03095 at 651.705 kb on - strand, within ABZR87_RS03095 at 651.705 kb on - strand, within ABZR87_RS03095 at 651.715 kb on + strand, within ABZR87_RS03095 at 651.716 kb on - strand, within ABZR87_RS03095 at 652.195 kb on + strand, within ABZR87_RS03095 at 652.195 kb on + strand, within ABZR87_RS03095 at 652.196 kb on - strand, within ABZR87_RS03095 at 652.196 kb on - strand, within ABZR87_RS03095 at 652.196 kb on - strand, within ABZR87_RS03095 at 652.196 kb on - strand, within ABZR87_RS03095 at 652.345 kb on + strand, within ABZR87_RS03095 at 652.345 kb on + strand, within ABZR87_RS03095 at 652.345 kb on + strand, within ABZR87_RS03095 at 652.345 kb on + strand, within ABZR87_RS03095 at 652.346 kb on - strand, within ABZR87_RS03095 at 652.346 kb on - strand, within ABZR87_RS03095 at 652.369 kb on + strand, within ABZR87_RS03095 at 652.369 kb on + strand, within ABZR87_RS03095 at 652.370 kb on - strand, within ABZR87_RS03095 at 652.370 kb on - strand, within ABZR87_RS03095 at 652.376 kb on + strand, within ABZR87_RS03095 at 652.377 kb on - strand, within ABZR87_RS03095 at 652.387 kb on + strand, within ABZR87_RS03095 at 652.387 kb on + strand, within ABZR87_RS03095 at 652.387 kb on + strand, within ABZR87_RS03095 at 652.387 kb on + strand, within ABZR87_RS03095 at 652.388 kb on - strand, within ABZR87_RS03095 at 652.388 kb on - strand, within ABZR87_RS03095 at 652.388 kb on - strand, within ABZR87_RS03095 at 652.388 kb on - strand, within ABZR87_RS03095 at 652.388 kb on - strand, within ABZR87_RS03095 at 652.423 kb on + strand, within ABZR87_RS03095 at 652.423 kb on + strand, within ABZR87_RS03095 at 652.423 kb on + strand, within ABZR87_RS03095 at 652.423 kb on + strand, within ABZR87_RS03095 at 652.423 kb on + strand, within ABZR87_RS03095 at 652.424 kb on - strand, within ABZR87_RS03095 at 652.424 kb on - strand, within ABZR87_RS03095 at 652.424 kb on - strand, within ABZR87_RS03095 at 652.424 kb on - strand, within ABZR87_RS03095 at 652.424 kb on - strand, within ABZR87_RS03095 at 652.424 kb on - strand, within ABZR87_RS03095 at 652.426 kb on + strand, within ABZR87_RS03095 at 652.426 kb on + strand, within ABZR87_RS03095 at 652.426 kb on + strand, within ABZR87_RS03095 at 652.426 kb on + strand, within ABZR87_RS03095 at 652.426 kb on + strand, within ABZR87_RS03095 at 652.427 kb on - strand, within ABZR87_RS03095 at 652.427 kb on - strand, within ABZR87_RS03095 at 652.427 kb on - strand, within ABZR87_RS03095 at 652.427 kb on - strand, within ABZR87_RS03095 at 652.427 kb on - strand, within ABZR87_RS03095 at 652.427 kb on - strand, within ABZR87_RS03095 at 652.427 kb on - strand, within ABZR87_RS03095 at 652.606 kb on + strand, within ABZR87_RS03095 at 652.606 kb on + strand, within ABZR87_RS03095 at 652.606 kb on + strand, within ABZR87_RS03095 at 652.606 kb on + strand, within ABZR87_RS03095 at 652.606 kb on + strand, within ABZR87_RS03095 at 652.614 kb on + strand, within ABZR87_RS03095 at 652.614 kb on + strand, within ABZR87_RS03095 at 652.615 kb on - strand, within ABZR87_RS03095 at 652.627 kb on + strand, within ABZR87_RS03095 at 652.627 kb on + strand, within ABZR87_RS03095 at 652.738 kb on + strand at 652.738 kb on + strand at 652.738 kb on + strand at 652.739 kb on - strand at 652.739 kb on - strand at 652.798 kb on + strand at 652.799 kb on - strand at 653.188 kb on + strand, within ABZR87_RS03100 at 653.189 kb on - strand, within ABZR87_RS03100 at 653.189 kb on - strand, within ABZR87_RS03100 at 653.189 kb on - strand, within ABZR87_RS03100 at 653.227 kb on + strand, within ABZR87_RS03100 at 653.227 kb on + strand, within ABZR87_RS03100 at 653.227 kb on + strand, within ABZR87_RS03100 at 653.227 kb on + strand, within ABZR87_RS03100 at 653.227 kb on + strand, within ABZR87_RS03100 at 653.227 kb on + strand, within ABZR87_RS03100 at 653.227 kb on + strand, within ABZR87_RS03100 at 653.228 kb on - strand, within ABZR87_RS03100 at 653.228 kb on - strand, within ABZR87_RS03100 at 653.410 kb on + strand, within ABZR87_RS03100 at 653.410 kb on + strand, within ABZR87_RS03100 at 653.410 kb on + strand, within ABZR87_RS03100 at 653.411 kb on - strand, within ABZR87_RS03100 at 653.411 kb on - strand, within ABZR87_RS03100 at 653.411 kb on - strand, within ABZR87_RS03100 at 653.411 kb on - strand, within ABZR87_RS03100 at 653.411 kb on - strand, within ABZR87_RS03100 at 653.411 kb on - strand, within ABZR87_RS03100 at 653.422 kb on + strand, within ABZR87_RS03100 at 653.422 kb on + strand, within ABZR87_RS03100 at 653.422 kb on + strand, within ABZR87_RS03100 at 653.547 kb on + strand at 653.547 kb on + strand at 653.548 kb on - strand at 653.548 kb on - strand at 653.698 kb on + strand at 653.698 kb on + strand at 653.698 kb on + strand at 653.698 kb on + strand at 653.698 kb on + strand at 653.698 kb on + strand at 653.698 kb on + strand at 653.698 kb on + strand at 653.699 kb on - strand at 653.699 kb on - strand at 653.699 kb on - strand at 653.699 kb on - strand at 653.699 kb on - strand at 653.699 kb on - strand at 653.699 kb on - strand at 653.737 kb on + strand at 653.737 kb on + strand at 653.738 kb on - strand at 653.738 kb on - strand at 653.738 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 4; outgrowth in LB remove 650,481 + +0.9 650,481 + +0.5 650,481 + -0.2 650,482 - -0.1 650,482 - -0.6 650,482 - -0.2 650,482 - -0.3 650,482 - +0.9 650,562 - +1.1 650,562 - +0.9 650,562 - -1.8 650,668 + +0.3 650,668 + -0.4 650,668 + -0.9 650,668 + +0.8 650,668 + +0.4 650,669 - -0.5 650,669 - +0.6 650,734 + ABZR87_RS03090 0.17 -0.9 650,734 + ABZR87_RS03090 0.17 -0.1 650,734 + ABZR87_RS03090 0.17 -0.2 650,734 + ABZR87_RS03090 0.17 -0.5 650,735 - ABZR87_RS03090 0.17 -0.9 650,735 - ABZR87_RS03090 0.17 +0.4 650,735 - ABZR87_RS03090 0.17 +0.4 650,735 - ABZR87_RS03090 0.17 -0.2 650,735 - ABZR87_RS03090 0.17 -0.3 650,735 - ABZR87_RS03090 0.17 -0.4 650,736 + ABZR87_RS03090 0.18 +0.7 650,736 + ABZR87_RS03090 0.18 +0.5 650,737 - ABZR87_RS03090 0.18 +0.1 650,824 + ABZR87_RS03090 0.29 +0.0 650,862 + ABZR87_RS03090 0.33 +0.8 650,862 + ABZR87_RS03090 0.33 -1.0 650,862 + ABZR87_RS03090 0.33 -1.0 650,862 + ABZR87_RS03090 0.33 -0.0 650,863 - ABZR87_RS03090 0.33 +1.6 650,863 - ABZR87_RS03090 0.33 +2.0 650,863 - ABZR87_RS03090 0.33 -0.5 650,863 - ABZR87_RS03090 0.33 +0.5 650,869 + ABZR87_RS03090 0.34 +0.2 650,869 + ABZR87_RS03090 0.34 -0.1 650,869 + ABZR87_RS03090 0.34 +0.5 650,870 - ABZR87_RS03090 0.34 +0.3 650,870 - ABZR87_RS03090 0.34 -0.9 650,870 - ABZR87_RS03090 0.34 +0.5 650,870 - ABZR87_RS03090 0.34 -0.4 650,870 - ABZR87_RS03090 0.34 +1.2 650,870 - ABZR87_RS03090 0.34 -0.3 650,870 - ABZR87_RS03090 0.34 +0.3 650,870 - ABZR87_RS03090 0.34 +0.2 650,870 - ABZR87_RS03090 0.34 +0.0 650,870 - ABZR87_RS03090 0.34 +0.1 650,870 - ABZR87_RS03090 0.34 -0.7 651,298 + ABZR87_RS03090 0.88 -0.2 651,298 + ABZR87_RS03090 0.88 -0.7 651,299 - ABZR87_RS03090 0.88 -0.3 651,299 - ABZR87_RS03090 0.88 +0.6 651,299 - ABZR87_RS03090 0.88 +0.2 651,299 - ABZR87_RS03090 0.88 +0.2 651,400 + -0.5 651,400 + +0.2 651,401 - +0.3 651,424 + +0.8 651,425 - +0.5 651,524 - -0.3 651,704 + ABZR87_RS03095 0.21 +0.8 651,704 + ABZR87_RS03095 0.21 +0.0 651,705 - ABZR87_RS03095 0.21 +0.3 651,705 - ABZR87_RS03095 0.21 -0.6 651,715 + ABZR87_RS03095 0.22 -0.2 651,716 - ABZR87_RS03095 0.22 +1.8 652,195 + ABZR87_RS03095 0.58 +0.2 652,195 + ABZR87_RS03095 0.58 +1.6 652,196 - ABZR87_RS03095 0.58 -0.1 652,196 - ABZR87_RS03095 0.58 -0.5 652,196 - ABZR87_RS03095 0.58 -0.1 652,196 - ABZR87_RS03095 0.58 -0.0 652,345 + ABZR87_RS03095 0.69 +0.5 652,345 + ABZR87_RS03095 0.69 -1.3 652,345 + ABZR87_RS03095 0.69 +0.1 652,345 + ABZR87_RS03095 0.69 -1.5 652,346 - ABZR87_RS03095 0.69 -0.2 652,346 - ABZR87_RS03095 0.69 +0.0 652,369 + ABZR87_RS03095 0.71 +0.8 652,369 + ABZR87_RS03095 0.71 +0.5 652,370 - ABZR87_RS03095 0.71 -1.4 652,370 - ABZR87_RS03095 0.71 -0.8 652,376 + ABZR87_RS03095 0.71 +0.3 652,377 - ABZR87_RS03095 0.71 -0.5 652,387 + ABZR87_RS03095 0.72 +1.0 652,387 + ABZR87_RS03095 0.72 +0.7 652,387 + ABZR87_RS03095 0.72 -0.5 652,387 + ABZR87_RS03095 0.72 +0.4 652,388 - ABZR87_RS03095 0.72 +0.6 652,388 - ABZR87_RS03095 0.72 -0.0 652,388 - ABZR87_RS03095 0.72 -0.0 652,388 - ABZR87_RS03095 0.72 -0.1 652,388 - ABZR87_RS03095 0.72 +0.3 652,423 + ABZR87_RS03095 0.75 -0.3 652,423 + ABZR87_RS03095 0.75 -1.3 652,423 + ABZR87_RS03095 0.75 +0.1 652,423 + ABZR87_RS03095 0.75 -0.5 652,423 + ABZR87_RS03095 0.75 -0.2 652,424 - ABZR87_RS03095 0.75 -0.4 652,424 - ABZR87_RS03095 0.75 +1.7 652,424 - ABZR87_RS03095 0.75 +0.6 652,424 - ABZR87_RS03095 0.75 -0.1 652,424 - ABZR87_RS03095 0.75 -0.2 652,424 - ABZR87_RS03095 0.75 -0.0 652,426 + ABZR87_RS03095 0.75 +0.0 652,426 + ABZR87_RS03095 0.75 +1.1 652,426 + ABZR87_RS03095 0.75 -0.5 652,426 + ABZR87_RS03095 0.75 -0.1 652,426 + ABZR87_RS03095 0.75 -0.6 652,427 - ABZR87_RS03095 0.75 +0.3 652,427 - ABZR87_RS03095 0.75 -0.4 652,427 - ABZR87_RS03095 0.75 -1.2 652,427 - ABZR87_RS03095 0.75 +2.9 652,427 - ABZR87_RS03095 0.75 -1.3 652,427 - ABZR87_RS03095 0.75 -1.1 652,427 - ABZR87_RS03095 0.75 +0.5 652,606 + ABZR87_RS03095 0.88 -0.1 652,606 + ABZR87_RS03095 0.88 -1.4 652,606 + ABZR87_RS03095 0.88 +0.5 652,606 + ABZR87_RS03095 0.88 +0.4 652,606 + ABZR87_RS03095 0.88 +0.1 652,614 + ABZR87_RS03095 0.89 +0.1 652,614 + ABZR87_RS03095 0.89 +0.3 652,615 - ABZR87_RS03095 0.89 -0.2 652,627 + ABZR87_RS03095 0.90 +0.4 652,627 + ABZR87_RS03095 0.90 +1.7 652,738 + -0.5 652,738 + +0.2 652,738 + +0.3 652,739 - +0.1 652,739 - -0.1 652,798 + -0.7 652,799 - -0.4 653,188 + ABZR87_RS03100 0.58 -0.1 653,189 - ABZR87_RS03100 0.58 -1.1 653,189 - ABZR87_RS03100 0.58 -1.3 653,189 - ABZR87_RS03100 0.58 -0.4 653,227 + ABZR87_RS03100 0.63 +0.3 653,227 + ABZR87_RS03100 0.63 -1.9 653,227 + ABZR87_RS03100 0.63 -1.6 653,227 + ABZR87_RS03100 0.63 -0.4 653,227 + ABZR87_RS03100 0.63 +2.6 653,227 + ABZR87_RS03100 0.63 +0.1 653,227 + ABZR87_RS03100 0.63 +1.6 653,228 - ABZR87_RS03100 0.63 -0.6 653,228 - ABZR87_RS03100 0.63 +1.1 653,410 + ABZR87_RS03100 0.88 -0.4 653,410 + ABZR87_RS03100 0.88 +0.9 653,410 + ABZR87_RS03100 0.88 +0.0 653,411 - ABZR87_RS03100 0.88 -0.4 653,411 - ABZR87_RS03100 0.88 +0.7 653,411 - ABZR87_RS03100 0.88 -0.0 653,411 - ABZR87_RS03100 0.88 +0.0 653,411 - ABZR87_RS03100 0.88 +0.0 653,411 - ABZR87_RS03100 0.88 +0.1 653,422 + ABZR87_RS03100 0.89 +0.4 653,422 + ABZR87_RS03100 0.89 -0.0 653,422 + ABZR87_RS03100 0.89 +0.2 653,547 + -0.2 653,547 + -0.3 653,548 - +0.4 653,548 - +1.3 653,698 + +1.7 653,698 + -0.4 653,698 + +0.4 653,698 + -0.1 653,698 + +0.5 653,698 + +1.8 653,698 + +0.7 653,698 + +0.8 653,699 - -0.1 653,699 - -1.3 653,699 - +0.9 653,699 - -1.3 653,699 - -0.3 653,699 - -1.0 653,699 - -0.4 653,737 + +0.4 653,737 + +0.5 653,738 - -1.2 653,738 - -0.8 653,738 - -0.9
Or see this region's nucleotide sequence