Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02890

Experiment: root sample 4; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS02880 and ABZR87_RS02885 are separated by 112 nucleotidesABZR87_RS02885 and ABZR87_RS02890 are separated by 20 nucleotidesABZR87_RS02890 and ABZR87_RS02895 are separated by 10 nucleotidesABZR87_RS02895 and ABZR87_RS02900 are separated by 8 nucleotides ABZR87_RS02880: ABZR87_RS02880 - DNA helicase RecQ, at 597,273 to 599,186 _RS02880 ABZR87_RS02885: ABZR87_RS02885 - class I SAM-dependent methyltransferase, at 599,299 to 599,889 _RS02885 ABZR87_RS02890: ABZR87_RS02890 - DUF2135 domain-containing protein, at 599,910 to 600,752 _RS02890 ABZR87_RS02895: ABZR87_RS02895 - YfaP family protein, at 600,763 to 601,554 _RS02895 ABZR87_RS02900: ABZR87_RS02900 - DUF2300 domain-containing protein, at 601,563 to 603,293 _RS02900 Position (kb) 599 600 601Strain fitness (log2 ratio) -2 -1 0 1 2 3at 598.990 kb on + strand, within ABZR87_RS02880at 598.990 kb on + strand, within ABZR87_RS02880at 598.991 kb on - strand, within ABZR87_RS02880at 599.166 kb on + strandat 599.166 kb on + strandat 599.166 kb on + strandat 599.167 kb on - strandat 599.182 kb on + strandat 599.182 kb on + strandat 599.183 kb on - strandat 599.183 kb on - strandat 599.183 kb on - strandat 599.183 kb on - strandat 599.183 kb on - strandat 599.183 kb on - strandat 599.235 kb on + strandat 599.235 kb on + strandat 599.235 kb on + strandat 599.236 kb on - strandat 599.480 kb on + strand, within ABZR87_RS02885at 599.480 kb on + strand, within ABZR87_RS02885at 599.480 kb on + strand, within ABZR87_RS02885at 599.481 kb on - strand, within ABZR87_RS02885at 599.481 kb on - strand, within ABZR87_RS02885at 599.481 kb on - strand, within ABZR87_RS02885at 599.481 kb on - strand, within ABZR87_RS02885at 599.648 kb on + strand, within ABZR87_RS02885at 599.649 kb on - strand, within ABZR87_RS02885at 599.690 kb on + strand, within ABZR87_RS02885at 599.802 kb on - strand, within ABZR87_RS02885at 599.802 kb on - strand, within ABZR87_RS02885at 599.802 kb on - strand, within ABZR87_RS02885at 599.802 kb on - strand, within ABZR87_RS02885at 599.911 kb on + strandat 599.911 kb on + strandat 599.911 kb on + strandat 599.911 kb on + strandat 599.912 kb on - strandat 599.931 kb on + strandat 600.061 kb on + strand, within ABZR87_RS02890at 600.062 kb on - strand, within ABZR87_RS02890at 600.062 kb on - strand, within ABZR87_RS02890at 600.064 kb on + strand, within ABZR87_RS02890at 600.064 kb on + strand, within ABZR87_RS02890at 600.064 kb on + strand, within ABZR87_RS02890at 600.064 kb on + strand, within ABZR87_RS02890at 600.064 kb on + strand, within ABZR87_RS02890at 600.065 kb on - strand, within ABZR87_RS02890at 600.065 kb on - strand, within ABZR87_RS02890at 600.065 kb on - strand, within ABZR87_RS02890at 600.065 kb on - strand, within ABZR87_RS02890at 600.065 kb on - strand, within ABZR87_RS02890at 600.065 kb on - strand, within ABZR87_RS02890at 600.065 kb on - strand, within ABZR87_RS02890at 600.065 kb on - strand, within ABZR87_RS02890at 600.073 kb on + strand, within ABZR87_RS02890at 600.073 kb on + strand, within ABZR87_RS02890at 600.074 kb on - strand, within ABZR87_RS02890at 600.074 kb on - strand, within ABZR87_RS02890at 600.074 kb on - strand, within ABZR87_RS02890at 600.074 kb on - strand, within ABZR87_RS02890at 600.083 kb on - strand, within ABZR87_RS02890at 600.083 kb on - strand, within ABZR87_RS02890at 600.083 kb on - strand, within ABZR87_RS02890at 600.083 kb on - strand, within ABZR87_RS02890at 600.083 kb on - strand, within ABZR87_RS02890at 600.083 kb on - strand, within ABZR87_RS02890at 600.083 kb on - strand, within ABZR87_RS02890at 600.112 kb on + strand, within ABZR87_RS02890at 600.112 kb on + strand, within ABZR87_RS02890at 600.112 kb on + strand, within ABZR87_RS02890at 600.112 kb on + strand, within ABZR87_RS02890at 600.112 kb on + strand, within ABZR87_RS02890at 600.113 kb on - strand, within ABZR87_RS02890at 600.113 kb on - strand, within ABZR87_RS02890at 600.184 kb on + strand, within ABZR87_RS02890at 600.185 kb on - strand, within ABZR87_RS02890at 600.289 kb on + strand, within ABZR87_RS02890at 600.289 kb on + strand, within ABZR87_RS02890at 600.290 kb on - strand, within ABZR87_RS02890at 600.290 kb on - strand, within ABZR87_RS02890at 600.298 kb on + strand, within ABZR87_RS02890at 600.298 kb on + strand, within ABZR87_RS02890at 600.299 kb on - strand, within ABZR87_RS02890at 600.299 kb on - strand, within ABZR87_RS02890at 600.371 kb on - strand, within ABZR87_RS02890at 600.371 kb on - strand, within ABZR87_RS02890at 600.438 kb on - strand, within ABZR87_RS02890at 600.583 kb on + strand, within ABZR87_RS02890at 600.601 kb on + strand, within ABZR87_RS02890at 600.855 kb on + strand, within ABZR87_RS02895at 600.857 kb on + strand, within ABZR87_RS02895at 600.858 kb on - strand, within ABZR87_RS02895at 600.858 kb on - strand, within ABZR87_RS02895at 600.858 kb on - strand, within ABZR87_RS02895at 600.858 kb on - strand, within ABZR87_RS02895at 600.858 kb on - strand, within ABZR87_RS02895at 600.944 kb on + strand, within ABZR87_RS02895at 600.944 kb on + strand, within ABZR87_RS02895at 600.945 kb on - strand, within ABZR87_RS02895at 600.953 kb on + strand, within ABZR87_RS02895at 600.953 kb on + strand, within ABZR87_RS02895at 600.954 kb on - strand, within ABZR87_RS02895at 600.954 kb on - strand, within ABZR87_RS02895at 600.954 kb on - strand, within ABZR87_RS02895at 600.954 kb on - strand, within ABZR87_RS02895at 601.178 kb on + strand, within ABZR87_RS02895at 601.178 kb on + strand, within ABZR87_RS02895at 601.179 kb on - strand, within ABZR87_RS02895at 601.179 kb on - strand, within ABZR87_RS02895at 601.179 kb on - strand, within ABZR87_RS02895at 601.286 kb on + strand, within ABZR87_RS02895at 601.287 kb on - strand, within ABZR87_RS02895at 601.287 kb on - strand, within ABZR87_RS02895at 601.287 kb on - strand, within ABZR87_RS02895at 601.287 kb on - strand, within ABZR87_RS02895at 601.287 kb on - strand, within ABZR87_RS02895at 601.424 kb on + strand, within ABZR87_RS02895at 601.424 kb on + strand, within ABZR87_RS02895at 601.424 kb on + strand, within ABZR87_RS02895at 601.425 kb on - strand, within ABZR87_RS02895at 601.425 kb on - strand, within ABZR87_RS02895at 601.425 kb on - strand, within ABZR87_RS02895at 601.425 kb on - strand, within ABZR87_RS02895at 601.425 kb on - strand, within ABZR87_RS02895at 601.660 kb on + strandat 601.660 kb on + strandat 601.661 kb on - strandat 601.661 kb on - strandat 601.711 kb on + strandat 601.711 kb on + strandat 601.711 kb on + strandat 601.712 kb on - strandat 601.712 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 4; outgrowth in LB
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598,990 + ABZR87_RS02880 0.90 -0.2
598,990 + ABZR87_RS02880 0.90 -0.3
598,991 - ABZR87_RS02880 0.90 +0.4
599,166 + -0.1
599,166 + +1.7
599,166 + +0.5
599,167 - +1.7
599,182 + +0.7
599,182 + +1.3
599,183 - +1.6
599,183 - +0.1
599,183 - -1.5
599,183 - -0.1
599,183 - -0.5
599,183 - +1.1
599,235 + -0.4
599,235 + -0.7
599,235 + +0.1
599,236 - +1.3
599,480 + ABZR87_RS02885 0.31 -0.5
599,480 + ABZR87_RS02885 0.31 -1.4
599,480 + ABZR87_RS02885 0.31 -0.3
599,481 - ABZR87_RS02885 0.31 -0.5
599,481 - ABZR87_RS02885 0.31 +0.8
599,481 - ABZR87_RS02885 0.31 +0.3
599,481 - ABZR87_RS02885 0.31 -0.4
599,648 + ABZR87_RS02885 0.59 -1.2
599,649 - ABZR87_RS02885 0.59 +0.7
599,690 + ABZR87_RS02885 0.66 -1.7
599,802 - ABZR87_RS02885 0.85 -0.9
599,802 - ABZR87_RS02885 0.85 -0.1
599,802 - ABZR87_RS02885 0.85 -0.1
599,802 - ABZR87_RS02885 0.85 +0.1
599,911 + +1.3
599,911 + -0.2
599,911 + +1.1
599,911 + -0.4
599,912 - +1.3
599,931 + -0.4
600,061 + ABZR87_RS02890 0.18 -0.8
600,062 - ABZR87_RS02890 0.18 -0.5
600,062 - ABZR87_RS02890 0.18 -0.7
600,064 + ABZR87_RS02890 0.18 -0.1
600,064 + ABZR87_RS02890 0.18 +2.1
600,064 + ABZR87_RS02890 0.18 -0.1
600,064 + ABZR87_RS02890 0.18 -1.1
600,064 + ABZR87_RS02890 0.18 -0.6
600,065 - ABZR87_RS02890 0.18 -1.2
600,065 - ABZR87_RS02890 0.18 -1.1
600,065 - ABZR87_RS02890 0.18 +1.1
600,065 - ABZR87_RS02890 0.18 +0.2
600,065 - ABZR87_RS02890 0.18 +2.0
600,065 - ABZR87_RS02890 0.18 +0.2
600,065 - ABZR87_RS02890 0.18 +0.4
600,065 - ABZR87_RS02890 0.18 -0.1
600,073 + ABZR87_RS02890 0.19 -0.4
600,073 + ABZR87_RS02890 0.19 -0.7
600,074 - ABZR87_RS02890 0.19 -0.5
600,074 - ABZR87_RS02890 0.19 +0.1
600,074 - ABZR87_RS02890 0.19 +1.6
600,074 - ABZR87_RS02890 0.19 +0.7
600,083 - ABZR87_RS02890 0.21 +0.3
600,083 - ABZR87_RS02890 0.21 +2.4
600,083 - ABZR87_RS02890 0.21 -0.9
600,083 - ABZR87_RS02890 0.21 -0.9
600,083 - ABZR87_RS02890 0.21 -0.7
600,083 - ABZR87_RS02890 0.21 -0.2
600,083 - ABZR87_RS02890 0.21 -0.4
600,112 + ABZR87_RS02890 0.24 +1.3
600,112 + ABZR87_RS02890 0.24 +0.0
600,112 + ABZR87_RS02890 0.24 +1.0
600,112 + ABZR87_RS02890 0.24 -0.6
600,112 + ABZR87_RS02890 0.24 -0.5
600,113 - ABZR87_RS02890 0.24 +0.2
600,113 - ABZR87_RS02890 0.24 -0.3
600,184 + ABZR87_RS02890 0.33 -1.7
600,185 - ABZR87_RS02890 0.33 -1.1
600,289 + ABZR87_RS02890 0.45 -0.7
600,289 + ABZR87_RS02890 0.45 -0.0
600,290 - ABZR87_RS02890 0.45 +0.6
600,290 - ABZR87_RS02890 0.45 -1.9
600,298 + ABZR87_RS02890 0.46 -0.0
600,298 + ABZR87_RS02890 0.46 -1.6
600,299 - ABZR87_RS02890 0.46 +1.5
600,299 - ABZR87_RS02890 0.46 -0.5
600,371 - ABZR87_RS02890 0.55 -0.6
600,371 - ABZR87_RS02890 0.55 -0.1
600,438 - ABZR87_RS02890 0.63 -0.1
600,583 + ABZR87_RS02890 0.80 -0.4
600,601 + ABZR87_RS02890 0.82 -0.4
600,855 + ABZR87_RS02895 0.12 +0.2
600,857 + ABZR87_RS02895 0.12 +0.5
600,858 - ABZR87_RS02895 0.12 -1.4
600,858 - ABZR87_RS02895 0.12 +0.0
600,858 - ABZR87_RS02895 0.12 +1.1
600,858 - ABZR87_RS02895 0.12 +1.0
600,858 - ABZR87_RS02895 0.12 -0.7
600,944 + ABZR87_RS02895 0.23 +0.8
600,944 + ABZR87_RS02895 0.23 +0.4
600,945 - ABZR87_RS02895 0.23 +1.0
600,953 + ABZR87_RS02895 0.24 +0.8
600,953 + ABZR87_RS02895 0.24 +3.7
600,954 - ABZR87_RS02895 0.24 +0.4
600,954 - ABZR87_RS02895 0.24 -0.4
600,954 - ABZR87_RS02895 0.24 -0.6
600,954 - ABZR87_RS02895 0.24 -0.2
601,178 + ABZR87_RS02895 0.52 +0.0
601,178 + ABZR87_RS02895 0.52 -0.6
601,179 - ABZR87_RS02895 0.53 +0.6
601,179 - ABZR87_RS02895 0.53 +0.2
601,179 - ABZR87_RS02895 0.53 -0.5
601,286 + ABZR87_RS02895 0.66 +0.1
601,287 - ABZR87_RS02895 0.66 -0.2
601,287 - ABZR87_RS02895 0.66 +1.3
601,287 - ABZR87_RS02895 0.66 -0.4
601,287 - ABZR87_RS02895 0.66 -0.4
601,287 - ABZR87_RS02895 0.66 +1.3
601,424 + ABZR87_RS02895 0.83 -0.1
601,424 + ABZR87_RS02895 0.83 +0.6
601,424 + ABZR87_RS02895 0.83 +0.2
601,425 - ABZR87_RS02895 0.84 +1.6
601,425 - ABZR87_RS02895 0.84 +0.4
601,425 - ABZR87_RS02895 0.84 -0.9
601,425 - ABZR87_RS02895 0.84 -0.6
601,425 - ABZR87_RS02895 0.84 +0.7
601,660 + +0.3
601,660 + -1.2
601,661 - +0.7
601,661 - +1.1
601,711 + +0.4
601,711 + -1.3
601,711 + +0.8
601,712 - -0.2
601,712 - -1.4

Or see this region's nucleotide sequence