Experiment: root sample 4; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01110 and ABZR87_RS01115 are separated by 170 nucleotides ABZR87_RS01115 and ABZR87_RS01120 are separated by 78 nucleotides ABZR87_RS01120 and ABZR87_RS01125 are separated by 121 nucleotides
ABZR87_RS01110: ABZR87_RS01110 - 3-deoxy-7-phosphoheptulonate synthase AroG, at 230,181 to 231,260
_RS01110
ABZR87_RS01115: ABZR87_RS01115 - mechanosensitive ion channel family protein, at 231,431 to 232,333
_RS01115
ABZR87_RS01120: ABZR87_RS01120 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 232,412 to 232,969
_RS01120
ABZR87_RS01125: ABZR87_RS01125 - FAD-linked oxidase C-terminal domain-containing protein, at 233,091 to 234,509
_RS01125
Position (kb) 231
232
233 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 230.460 kb on + strand, within ABZR87_RS01110 at 230.460 kb on + strand, within ABZR87_RS01110 at 230.460 kb on + strand, within ABZR87_RS01110 at 230.610 kb on + strand, within ABZR87_RS01110 at 230.610 kb on + strand, within ABZR87_RS01110 at 230.634 kb on + strand, within ABZR87_RS01110 at 230.634 kb on + strand, within ABZR87_RS01110 at 230.634 kb on + strand, within ABZR87_RS01110 at 230.635 kb on - strand, within ABZR87_RS01110 at 230.901 kb on + strand, within ABZR87_RS01110 at 230.901 kb on + strand, within ABZR87_RS01110 at 230.901 kb on + strand, within ABZR87_RS01110 at 230.902 kb on - strand, within ABZR87_RS01110 at 230.902 kb on - strand, within ABZR87_RS01110 at 230.902 kb on - strand, within ABZR87_RS01110 at 230.902 kb on - strand, within ABZR87_RS01110 at 230.902 kb on - strand, within ABZR87_RS01110 at 231.335 kb on + strand at 231.335 kb on + strand at 231.335 kb on + strand at 231.335 kb on + strand at 231.335 kb on + strand at 231.335 kb on + strand at 231.335 kb on + strand at 231.336 kb on - strand at 231.336 kb on - strand at 231.336 kb on - strand at 231.336 kb on - strand at 231.336 kb on - strand at 231.336 kb on - strand at 231.336 kb on - strand at 231.337 kb on + strand at 231.337 kb on + strand at 231.338 kb on - strand at 231.357 kb on + strand at 231.357 kb on + strand at 231.390 kb on + strand at 231.390 kb on + strand at 231.390 kb on + strand at 231.390 kb on + strand at 231.390 kb on + strand at 231.390 kb on + strand at 231.390 kb on + strand at 231.391 kb on - strand at 231.391 kb on - strand at 231.391 kb on - strand at 231.395 kb on + strand at 231.395 kb on + strand at 231.395 kb on + strand at 231.395 kb on + strand at 231.396 kb on - strand at 231.396 kb on - strand at 231.396 kb on - strand at 231.396 kb on - strand at 231.396 kb on - strand at 231.396 kb on - strand at 231.396 kb on - strand at 231.396 kb on - strand at 231.396 kb on - strand at 231.396 kb on - strand at 231.396 kb on - strand at 231.396 kb on - strand at 231.476 kb on + strand at 231.477 kb on - strand at 231.576 kb on + strand, within ABZR87_RS01115 at 231.576 kb on + strand, within ABZR87_RS01115 at 231.633 kb on - strand, within ABZR87_RS01115 at 231.692 kb on + strand, within ABZR87_RS01115 at 231.692 kb on + strand, within ABZR87_RS01115 at 231.962 kb on + strand, within ABZR87_RS01115 at 231.962 kb on + strand, within ABZR87_RS01115 at 231.962 kb on + strand, within ABZR87_RS01115 at 231.962 kb on + strand, within ABZR87_RS01115 at 231.963 kb on - strand, within ABZR87_RS01115 at 231.963 kb on - strand, within ABZR87_RS01115 at 231.963 kb on - strand, within ABZR87_RS01115 at 232.149 kb on - strand, within ABZR87_RS01115 at 232.166 kb on + strand, within ABZR87_RS01115 at 232.166 kb on + strand, within ABZR87_RS01115 at 232.166 kb on + strand, within ABZR87_RS01115 at 232.167 kb on - strand, within ABZR87_RS01115 at 232.167 kb on - strand, within ABZR87_RS01115 at 232.167 kb on - strand, within ABZR87_RS01115 at 232.178 kb on + strand, within ABZR87_RS01115 at 232.179 kb on - strand, within ABZR87_RS01115 at 232.179 kb on - strand, within ABZR87_RS01115 at 232.179 kb on - strand, within ABZR87_RS01115 at 232.369 kb on + strand at 232.370 kb on - strand at 232.370 kb on - strand at 232.370 kb on - strand at 232.413 kb on + strand at 232.414 kb on - strand at 232.518 kb on + strand, within ABZR87_RS01120 at 232.518 kb on + strand, within ABZR87_RS01120 at 232.519 kb on - strand, within ABZR87_RS01120 at 232.519 kb on - strand, within ABZR87_RS01120 at 232.519 kb on - strand, within ABZR87_RS01120 at 232.674 kb on + strand, within ABZR87_RS01120 at 232.674 kb on + strand, within ABZR87_RS01120 at 232.674 kb on + strand, within ABZR87_RS01120 at 232.728 kb on + strand, within ABZR87_RS01120 at 232.729 kb on - strand, within ABZR87_RS01120 at 232.834 kb on + strand, within ABZR87_RS01120 at 232.835 kb on - strand, within ABZR87_RS01120 at 232.983 kb on + strand at 232.983 kb on + strand at 232.983 kb on + strand at 232.984 kb on - strand at 232.984 kb on - strand at 232.984 kb on - strand at 232.984 kb on - strand at 232.989 kb on + strand at 232.989 kb on + strand at 232.990 kb on - strand at 232.990 kb on - strand at 233.013 kb on + strand at 233.042 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 4; outgrowth in LB remove 230,460 + ABZR87_RS01110 0.26 -1.7 230,460 + ABZR87_RS01110 0.26 -1.1 230,460 + ABZR87_RS01110 0.26 -0.6 230,610 + ABZR87_RS01110 0.40 -0.7 230,610 + ABZR87_RS01110 0.40 +0.7 230,634 + ABZR87_RS01110 0.42 -1.8 230,634 + ABZR87_RS01110 0.42 -0.1 230,634 + ABZR87_RS01110 0.42 -1.8 230,635 - ABZR87_RS01110 0.42 -0.4 230,901 + ABZR87_RS01110 0.67 -1.8 230,901 + ABZR87_RS01110 0.67 -0.9 230,901 + ABZR87_RS01110 0.67 -1.1 230,902 - ABZR87_RS01110 0.67 +0.2 230,902 - ABZR87_RS01110 0.67 -1.2 230,902 - ABZR87_RS01110 0.67 -1.5 230,902 - ABZR87_RS01110 0.67 -1.5 230,902 - ABZR87_RS01110 0.67 -0.4 231,335 + -0.0 231,335 + +2.7 231,335 + +0.3 231,335 + -1.2 231,335 + +0.0 231,335 + -0.4 231,335 + -0.2 231,336 - -0.4 231,336 - +1.0 231,336 - -0.4 231,336 - +0.3 231,336 - +1.0 231,336 - +0.5 231,336 - -0.3 231,337 + +0.3 231,337 + -1.8 231,338 - +1.3 231,357 + +1.0 231,357 + -2.1 231,390 + +0.1 231,390 + +0.7 231,390 + -0.3 231,390 + +0.3 231,390 + -0.4 231,390 + +0.5 231,390 + +0.6 231,391 - +0.4 231,391 - +0.7 231,391 - -1.0 231,395 + +0.8 231,395 + -0.1 231,395 + -0.6 231,395 + -0.1 231,396 - -0.0 231,396 - +0.2 231,396 - -0.6 231,396 - -0.9 231,396 - -0.7 231,396 - -1.7 231,396 - +0.7 231,396 - -0.2 231,396 - -0.7 231,396 - +0.4 231,396 - -1.0 231,396 - -0.2 231,476 + +2.0 231,477 - +0.6 231,576 + ABZR87_RS01115 0.16 -0.3 231,576 + ABZR87_RS01115 0.16 +3.2 231,633 - ABZR87_RS01115 0.22 +0.2 231,692 + ABZR87_RS01115 0.29 +1.3 231,692 + ABZR87_RS01115 0.29 -0.8 231,962 + ABZR87_RS01115 0.59 +2.8 231,962 + ABZR87_RS01115 0.59 +0.7 231,962 + ABZR87_RS01115 0.59 +0.7 231,962 + ABZR87_RS01115 0.59 +0.3 231,963 - ABZR87_RS01115 0.59 +1.0 231,963 - ABZR87_RS01115 0.59 +0.6 231,963 - ABZR87_RS01115 0.59 +0.3 232,149 - ABZR87_RS01115 0.80 -0.1 232,166 + ABZR87_RS01115 0.81 +0.0 232,166 + ABZR87_RS01115 0.81 -1.3 232,166 + ABZR87_RS01115 0.81 -0.1 232,167 - ABZR87_RS01115 0.82 -0.7 232,167 - ABZR87_RS01115 0.82 -0.1 232,167 - ABZR87_RS01115 0.82 +0.2 232,178 + ABZR87_RS01115 0.83 -0.7 232,179 - ABZR87_RS01115 0.83 +0.4 232,179 - ABZR87_RS01115 0.83 +0.7 232,179 - ABZR87_RS01115 0.83 -0.5 232,369 + -0.2 232,370 - -1.4 232,370 - +0.1 232,370 - +0.1 232,413 + -0.4 232,414 - -1.3 232,518 + ABZR87_RS01120 0.19 -0.1 232,518 + ABZR87_RS01120 0.19 -0.4 232,519 - ABZR87_RS01120 0.19 -0.5 232,519 - ABZR87_RS01120 0.19 -0.7 232,519 - ABZR87_RS01120 0.19 -0.1 232,674 + ABZR87_RS01120 0.47 +0.5 232,674 + ABZR87_RS01120 0.47 -1.3 232,674 + ABZR87_RS01120 0.47 +1.2 232,728 + ABZR87_RS01120 0.57 +0.8 232,729 - ABZR87_RS01120 0.57 -2.1 232,834 + ABZR87_RS01120 0.76 -0.6 232,835 - ABZR87_RS01120 0.76 -1.1 232,983 + +1.1 232,983 + +1.0 232,983 + -0.8 232,984 - -0.3 232,984 - -0.1 232,984 - -0.4 232,984 - +2.5 232,989 + -1.3 232,989 + +0.1 232,990 - -0.0 232,990 - +0.1 233,013 + +1.2 233,042 - +1.7
Or see this region's nucleotide sequence