Experiment: root sample 4; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00995 and ABZR87_RS01000 are separated by 262 nucleotides ABZR87_RS01000 and ABZR87_RS01005 are separated by 21 nucleotides ABZR87_RS01005 and ABZR87_RS01010 overlap by 4 nucleotides ABZR87_RS01010 and ABZR87_RS01015 are separated by 56 nucleotides
ABZR87_RS00995: ABZR87_RS00995 - nucleotide exchange factor GrpE, at 198,913 to 199,560
_RS00995
ABZR87_RS01000: ABZR87_RS01000 - hypothetical protein, at 199,823 to 200,020
_RS01000
ABZR87_RS01005: ABZR87_RS01005 - RNA-binding S4 domain-containing protein, at 200,042 to 200,440
_RS01005
ABZR87_RS01010: ABZR87_RS01010 - ferrochelatase, at 200,437 to 201,552
_RS01010
ABZR87_RS01015: ABZR87_RS01015 - imidazolonepropionase, at 201,609 to 202,844
_RS01015
Position (kb) 200
201
202 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 199.560 kb on + strand at 199.560 kb on + strand at 199.560 kb on + strand at 199.560 kb on + strand at 199.561 kb on - strand at 199.571 kb on - strand at 199.590 kb on + strand at 199.590 kb on + strand at 199.590 kb on + strand at 199.590 kb on + strand at 199.590 kb on + strand at 199.591 kb on - strand at 199.591 kb on - strand at 199.591 kb on - strand at 199.591 kb on - strand at 199.620 kb on + strand at 199.620 kb on + strand at 199.621 kb on - strand at 199.640 kb on + strand at 199.708 kb on + strand at 199.708 kb on + strand at 199.709 kb on - strand at 199.709 kb on - strand at 199.716 kb on + strand at 199.716 kb on + strand at 199.716 kb on + strand at 199.716 kb on + strand at 199.716 kb on + strand at 199.717 kb on - strand at 199.717 kb on - strand at 199.717 kb on - strand at 199.717 kb on - strand at 199.772 kb on + strand at 199.772 kb on + strand at 199.772 kb on + strand at 199.773 kb on - strand at 199.773 kb on - strand at 199.820 kb on - strand at 199.820 kb on - strand at 199.820 kb on - strand at 199.820 kb on - strand at 199.919 kb on + strand, within ABZR87_RS01000 at 199.920 kb on - strand, within ABZR87_RS01000 at 199.920 kb on - strand, within ABZR87_RS01000 at 199.921 kb on + strand, within ABZR87_RS01000 at 199.921 kb on + strand, within ABZR87_RS01000 at 199.921 kb on + strand, within ABZR87_RS01000 at 199.921 kb on + strand, within ABZR87_RS01000 at 199.921 kb on + strand, within ABZR87_RS01000 at 199.921 kb on + strand, within ABZR87_RS01000 at 199.921 kb on + strand, within ABZR87_RS01000 at 199.922 kb on - strand, within ABZR87_RS01000 at 199.922 kb on - strand, within ABZR87_RS01000 at 199.922 kb on - strand, within ABZR87_RS01000 at 199.929 kb on - strand, within ABZR87_RS01000 at 199.958 kb on + strand, within ABZR87_RS01000 at 199.958 kb on + strand, within ABZR87_RS01000 at 199.958 kb on + strand, within ABZR87_RS01000 at 199.958 kb on + strand, within ABZR87_RS01000 at 199.958 kb on + strand, within ABZR87_RS01000 at 199.958 kb on + strand, within ABZR87_RS01000 at 199.958 kb on + strand, within ABZR87_RS01000 at 199.958 kb on + strand, within ABZR87_RS01000 at 199.958 kb on + strand, within ABZR87_RS01000 at 199.958 kb on + strand, within ABZR87_RS01000 at 199.958 kb on + strand, within ABZR87_RS01000 at 199.959 kb on - strand, within ABZR87_RS01000 at 199.959 kb on - strand, within ABZR87_RS01000 at 199.959 kb on - strand, within ABZR87_RS01000 at 199.959 kb on - strand, within ABZR87_RS01000 at 199.959 kb on - strand, within ABZR87_RS01000 at 199.959 kb on - strand, within ABZR87_RS01000 at 200.010 kb on + strand at 200.011 kb on - strand at 200.018 kb on + strand at 200.018 kb on + strand at 200.019 kb on - strand at 200.156 kb on + strand, within ABZR87_RS01005 at 200.181 kb on + strand, within ABZR87_RS01005 at 200.181 kb on + strand, within ABZR87_RS01005 at 200.181 kb on + strand, within ABZR87_RS01005 at 201.570 kb on - strand at 201.582 kb on + strand at 201.582 kb on + strand at 201.584 kb on + strand at 201.584 kb on + strand at 201.584 kb on + strand at 201.584 kb on + strand at 201.585 kb on - strand at 201.585 kb on - strand at 201.585 kb on - strand at 201.610 kb on + strand at 201.610 kb on + strand at 201.610 kb on + strand at 201.610 kb on + strand at 201.611 kb on - strand at 201.611 kb on - strand at 201.667 kb on + strand at 201.667 kb on + strand at 201.667 kb on + strand at 201.867 kb on - strand, within ABZR87_RS01015 at 201.867 kb on - strand, within ABZR87_RS01015 at 201.955 kb on + strand, within ABZR87_RS01015 at 201.956 kb on - strand, within ABZR87_RS01015 at 201.956 kb on - strand, within ABZR87_RS01015 at 201.956 kb on - strand, within ABZR87_RS01015 at 201.956 kb on - strand, within ABZR87_RS01015 at 201.956 kb on - strand, within ABZR87_RS01015 at 202.257 kb on + strand, within ABZR87_RS01015 at 202.261 kb on + strand, within ABZR87_RS01015 at 202.261 kb on + strand, within ABZR87_RS01015 at 202.261 kb on + strand, within ABZR87_RS01015 at 202.261 kb on + strand, within ABZR87_RS01015 at 202.261 kb on + strand, within ABZR87_RS01015 at 202.261 kb on + strand, within ABZR87_RS01015 at 202.261 kb on + strand, within ABZR87_RS01015 at 202.261 kb on + strand, within ABZR87_RS01015 at 202.261 kb on + strand, within ABZR87_RS01015 at 202.261 kb on + strand, within ABZR87_RS01015 at 202.262 kb on - strand, within ABZR87_RS01015 at 202.262 kb on - strand, within ABZR87_RS01015 at 202.549 kb on + strand, within ABZR87_RS01015 at 202.549 kb on + strand, within ABZR87_RS01015 at 202.549 kb on + strand, within ABZR87_RS01015 at 202.549 kb on + strand, within ABZR87_RS01015
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 4; outgrowth in LB remove 199,560 + -0.4 199,560 + -0.6 199,560 + +1.1 199,560 + -1.2 199,561 - +0.5 199,571 - -0.1 199,590 + -1.4 199,590 + -1.1 199,590 + -0.7 199,590 + -0.1 199,590 + +1.6 199,591 - -0.3 199,591 - -0.3 199,591 - +0.4 199,591 - -1.3 199,620 + -0.3 199,620 + -0.3 199,621 - +0.2 199,640 + +0.1 199,708 + +0.9 199,708 + -0.8 199,709 - +0.0 199,709 - -0.1 199,716 + +0.8 199,716 + -0.2 199,716 + -0.9 199,716 + -0.7 199,716 + -1.1 199,717 - -0.8 199,717 - -1.0 199,717 - -0.4 199,717 - -0.7 199,772 + -1.3 199,772 + -1.1 199,772 + +0.4 199,773 - -0.4 199,773 - -0.8 199,820 - +0.2 199,820 - -1.9 199,820 - +0.1 199,820 - -2.6 199,919 + ABZR87_RS01000 0.48 +0.7 199,920 - ABZR87_RS01000 0.49 -2.4 199,920 - ABZR87_RS01000 0.49 -0.1 199,921 + ABZR87_RS01000 0.49 -0.3 199,921 + ABZR87_RS01000 0.49 -0.2 199,921 + ABZR87_RS01000 0.49 +0.5 199,921 + ABZR87_RS01000 0.49 +0.6 199,921 + ABZR87_RS01000 0.49 -0.7 199,921 + ABZR87_RS01000 0.49 +0.8 199,921 + ABZR87_RS01000 0.49 -0.6 199,922 - ABZR87_RS01000 0.50 -2.1 199,922 - ABZR87_RS01000 0.50 +1.0 199,922 - ABZR87_RS01000 0.50 -0.8 199,929 - ABZR87_RS01000 0.54 +0.4 199,958 + ABZR87_RS01000 0.68 -0.1 199,958 + ABZR87_RS01000 0.68 -0.3 199,958 + ABZR87_RS01000 0.68 +0.2 199,958 + ABZR87_RS01000 0.68 -1.6 199,958 + ABZR87_RS01000 0.68 -0.1 199,958 + ABZR87_RS01000 0.68 -0.0 199,958 + ABZR87_RS01000 0.68 +0.6 199,958 + ABZR87_RS01000 0.68 -1.2 199,958 + ABZR87_RS01000 0.68 +0.6 199,958 + ABZR87_RS01000 0.68 -0.6 199,958 + ABZR87_RS01000 0.68 +1.0 199,959 - ABZR87_RS01000 0.69 -0.2 199,959 - ABZR87_RS01000 0.69 -1.9 199,959 - ABZR87_RS01000 0.69 +0.1 199,959 - ABZR87_RS01000 0.69 +0.0 199,959 - ABZR87_RS01000 0.69 +1.3 199,959 - ABZR87_RS01000 0.69 +1.5 200,010 + -0.4 200,011 - -1.5 200,018 + -0.1 200,018 + -0.4 200,019 - -0.5 200,156 + ABZR87_RS01005 0.29 +1.6 200,181 + ABZR87_RS01005 0.35 +0.6 200,181 + ABZR87_RS01005 0.35 +0.9 200,181 + ABZR87_RS01005 0.35 +0.5 201,570 - +2.7 201,582 + +0.3 201,582 + +3.5 201,584 + +0.6 201,584 + +0.2 201,584 + -1.8 201,584 + -0.1 201,585 - +0.8 201,585 - +1.3 201,585 - +0.2 201,610 + +0.2 201,610 + -0.8 201,610 + -0.3 201,610 + -1.3 201,611 - +1.0 201,611 - +0.1 201,667 + +0.1 201,667 + -0.9 201,667 + +0.2 201,867 - ABZR87_RS01015 0.21 +0.7 201,867 - ABZR87_RS01015 0.21 +1.1 201,955 + ABZR87_RS01015 0.28 -1.7 201,956 - ABZR87_RS01015 0.28 +0.6 201,956 - ABZR87_RS01015 0.28 +0.0 201,956 - ABZR87_RS01015 0.28 -1.0 201,956 - ABZR87_RS01015 0.28 +0.1 201,956 - ABZR87_RS01015 0.28 -0.8 202,257 + ABZR87_RS01015 0.52 +1.0 202,261 + ABZR87_RS01015 0.53 -0.1 202,261 + ABZR87_RS01015 0.53 -0.4 202,261 + ABZR87_RS01015 0.53 -1.5 202,261 + ABZR87_RS01015 0.53 -0.1 202,261 + ABZR87_RS01015 0.53 -0.8 202,261 + ABZR87_RS01015 0.53 +0.5 202,261 + ABZR87_RS01015 0.53 +0.0 202,261 + ABZR87_RS01015 0.53 +0.4 202,261 + ABZR87_RS01015 0.53 +0.2 202,261 + ABZR87_RS01015 0.53 -0.1 202,262 - ABZR87_RS01015 0.53 +0.4 202,262 - ABZR87_RS01015 0.53 +0.0 202,549 + ABZR87_RS01015 0.76 +1.2 202,549 + ABZR87_RS01015 0.76 +0.5 202,549 + ABZR87_RS01015 0.76 -0.7 202,549 + ABZR87_RS01015 0.76 +0.2
Or see this region's nucleotide sequence