Experiment: Chloramphenicol 0.00033203125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pheS and Synpcc7942_2065 are separated by 123 nucleotides Synpcc7942_2065 and Synpcc7942_2066 are separated by 96 nucleotides
Synpcc7942_2064: pheS - phenylalanyl-tRNA synthetase subunit alpha, at 2,140,803 to 2,141,804
pheS
Synpcc7942_2065: Synpcc7942_2065 - hypothetical protein, at 2,141,928 to 2,142,182
_2065
Synpcc7942_2066: Synpcc7942_2066 - tRNA-dihydrouridine synthase A, at 2,142,279 to 2,143,310
_2066
Position (kb)
2141
2142
2143 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2141.959 kb on + strand, within Synpcc7942_2065 at 2142.041 kb on - strand, within Synpcc7942_2065 at 2142.200 kb on + strand at 2142.239 kb on - strand at 2142.255 kb on - strand at 2142.255 kb on - strand at 2142.294 kb on + strand at 2142.300 kb on - strand at 2142.302 kb on - strand at 2142.368 kb on - strand at 2142.376 kb on + strand at 2142.376 kb on + strand at 2142.376 kb on + strand at 2142.384 kb on - strand, within Synpcc7942_2066 at 2142.412 kb on + strand, within Synpcc7942_2066 at 2142.429 kb on - strand, within Synpcc7942_2066 at 2142.430 kb on - strand, within Synpcc7942_2066 at 2142.460 kb on + strand, within Synpcc7942_2066 at 2142.466 kb on - strand, within Synpcc7942_2066 at 2142.476 kb on + strand, within Synpcc7942_2066 at 2142.484 kb on - strand, within Synpcc7942_2066 at 2142.524 kb on + strand, within Synpcc7942_2066 at 2142.530 kb on + strand, within Synpcc7942_2066 at 2142.532 kb on - strand, within Synpcc7942_2066 at 2142.538 kb on + strand, within Synpcc7942_2066 at 2142.538 kb on + strand, within Synpcc7942_2066 at 2142.538 kb on + strand, within Synpcc7942_2066 at 2142.607 kb on + strand, within Synpcc7942_2066 at 2142.625 kb on - strand, within Synpcc7942_2066 at 2142.634 kb on + strand, within Synpcc7942_2066 at 2142.642 kb on - strand, within Synpcc7942_2066 at 2142.750 kb on + strand, within Synpcc7942_2066 at 2142.770 kb on - strand, within Synpcc7942_2066 at 2142.785 kb on - strand, within Synpcc7942_2066 at 2142.794 kb on + strand at 2142.809 kb on + strand, within Synpcc7942_2066 at 2142.836 kb on - strand, within Synpcc7942_2066 at 2142.836 kb on - strand, within Synpcc7942_2066 at 2142.836 kb on - strand, within Synpcc7942_2066 at 2142.883 kb on + strand, within Synpcc7942_2066 at 2142.914 kb on + strand, within Synpcc7942_2066 at 2142.914 kb on + strand, within Synpcc7942_2066 at 2142.914 kb on + strand, within Synpcc7942_2066 at 2142.914 kb on + strand, within Synpcc7942_2066 at 2142.922 kb on - strand, within Synpcc7942_2066 at 2142.922 kb on - strand, within Synpcc7942_2066 at 2142.922 kb on - strand, within Synpcc7942_2066 at 2142.922 kb on - strand, within Synpcc7942_2066 at 2142.922 kb on - strand, within Synpcc7942_2066 at 2142.922 kb on - strand at 2142.922 kb on - strand, within Synpcc7942_2066 at 2142.922 kb on - strand, within Synpcc7942_2066 at 2142.922 kb on - strand, within Synpcc7942_2066 at 2142.922 kb on - strand, within Synpcc7942_2066 at 2142.922 kb on - strand, within Synpcc7942_2066 at 2142.922 kb on - strand, within Synpcc7942_2066 at 2142.922 kb on - strand, within Synpcc7942_2066 at 2142.924 kb on - strand, within Synpcc7942_2066 at 2142.934 kb on - strand, within Synpcc7942_2066 at 2142.935 kb on + strand, within Synpcc7942_2066 at 2142.948 kb on + strand, within Synpcc7942_2066 at 2142.958 kb on + strand, within Synpcc7942_2066 at 2143.029 kb on + strand, within Synpcc7942_2066 at 2143.031 kb on - strand, within Synpcc7942_2066 at 2143.059 kb on + strand, within Synpcc7942_2066 at 2143.060 kb on - strand, within Synpcc7942_2066 at 2143.067 kb on - strand, within Synpcc7942_2066 at 2143.068 kb on - strand, within Synpcc7942_2066 at 2143.106 kb on - strand, within Synpcc7942_2066 at 2143.109 kb on - strand, within Synpcc7942_2066 at 2143.163 kb on - strand, within Synpcc7942_2066 at 2143.171 kb on + strand, within Synpcc7942_2066
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.00033203125 mg/ml remove 2,141,959 + Synpcc7942_2065 0.12 -1.1 2,142,041 - Synpcc7942_2065 0.44 -0.7 2,142,200 + +0.9 2,142,239 - +0.2 2,142,255 - +0.9 2,142,255 - +0.2 2,142,294 + -0.1 2,142,300 - +0.5 2,142,302 - -0.1 2,142,368 - -2.4 2,142,376 + -0.1 2,142,376 + +0.6 2,142,376 + -0.7 2,142,384 - Synpcc7942_2066 0.10 +1.5 2,142,412 + Synpcc7942_2066 0.13 -0.5 2,142,429 - Synpcc7942_2066 0.15 -0.1 2,142,430 - Synpcc7942_2066 0.15 +1.3 2,142,460 + Synpcc7942_2066 0.18 -0.1 2,142,466 - Synpcc7942_2066 0.18 -0.8 2,142,476 + Synpcc7942_2066 0.19 +0.6 2,142,484 - Synpcc7942_2066 0.20 +1.4 2,142,524 + Synpcc7942_2066 0.24 +1.6 2,142,530 + Synpcc7942_2066 0.24 +0.2 2,142,532 - Synpcc7942_2066 0.25 +0.3 2,142,538 + Synpcc7942_2066 0.25 +0.2 2,142,538 + Synpcc7942_2066 0.25 -0.6 2,142,538 + Synpcc7942_2066 0.25 +1.5 2,142,607 + Synpcc7942_2066 0.32 -1.1 2,142,625 - Synpcc7942_2066 0.34 +0.5 2,142,634 + Synpcc7942_2066 0.34 +0.9 2,142,642 - Synpcc7942_2066 0.35 +0.6 2,142,750 + Synpcc7942_2066 0.46 -1.7 2,142,770 - Synpcc7942_2066 0.48 -0.1 2,142,785 - Synpcc7942_2066 0.49 -1.7 2,142,794 + -1.1 2,142,809 + Synpcc7942_2066 0.51 +1.2 2,142,836 - Synpcc7942_2066 0.54 +1.2 2,142,836 - Synpcc7942_2066 0.54 +0.5 2,142,836 - Synpcc7942_2066 0.54 -0.1 2,142,883 + Synpcc7942_2066 0.59 +1.2 2,142,914 + Synpcc7942_2066 0.62 +0.3 2,142,914 + Synpcc7942_2066 0.62 -1.7 2,142,914 + Synpcc7942_2066 0.62 -1.7 2,142,914 + Synpcc7942_2066 0.62 +2.6 2,142,922 - Synpcc7942_2066 0.62 +2.1 2,142,922 - Synpcc7942_2066 0.62 +1.5 2,142,922 - Synpcc7942_2066 0.62 +0.5 2,142,922 - Synpcc7942_2066 0.62 +1.4 2,142,922 - Synpcc7942_2066 0.62 +1.2 2,142,922 - -0.1 2,142,922 - Synpcc7942_2066 0.62 +1.2 2,142,922 - Synpcc7942_2066 0.62 +1.2 2,142,922 - Synpcc7942_2066 0.62 +1.5 2,142,922 - Synpcc7942_2066 0.62 -0.1 2,142,922 - Synpcc7942_2066 0.62 +0.7 2,142,922 - Synpcc7942_2066 0.62 +0.9 2,142,922 - Synpcc7942_2066 0.62 +0.5 2,142,924 - Synpcc7942_2066 0.62 +0.9 2,142,934 - Synpcc7942_2066 0.63 +0.5 2,142,935 + Synpcc7942_2066 0.64 +1.9 2,142,948 + Synpcc7942_2066 0.65 +0.9 2,142,958 + Synpcc7942_2066 0.66 +0.9 2,143,029 + Synpcc7942_2066 0.73 -1.1 2,143,031 - Synpcc7942_2066 0.73 +0.4 2,143,059 + Synpcc7942_2066 0.76 +1.9 2,143,060 - Synpcc7942_2066 0.76 -1.1 2,143,067 - Synpcc7942_2066 0.76 +1.5 2,143,068 - Synpcc7942_2066 0.76 +1.2 2,143,106 - Synpcc7942_2066 0.80 -0.5 2,143,109 - Synpcc7942_2066 0.80 -0.5 2,143,163 - Synpcc7942_2066 0.86 -1.1 2,143,171 + Synpcc7942_2066 0.86 -0.1
Or see this region's nucleotide sequence