Experiment: Chloramphenicol 0.00033203125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0979 and Synpcc7942_0980 are separated by 75 nucleotides Synpcc7942_0980 and ssrA are separated by 63 nucleotides ssrA and Synpcc7942_0981 are separated by 69 nucleotides
Synpcc7942_0979: Synpcc7942_0979 - hypothetical protein, at 988,074 to 988,577
_0979
Synpcc7942_0980: Synpcc7942_0980 - hypothetical protein, at 988,653 to 989,276
_0980
Synpcc7942_R0017: ssrA - no description, at 989,340 to 989,730
ssrA
Synpcc7942_0981: Synpcc7942_0981 - hypothetical protein, at 989,800 to 991,494
_0981
Position (kb) 988
989
990 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 987.661 kb on + strand at 987.774 kb on + strand at 987.787 kb on - strand at 987.871 kb on + strand at 987.874 kb on - strand at 987.881 kb on + strand at 987.887 kb on + strand at 987.910 kb on + strand at 987.919 kb on - strand at 987.926 kb on - strand at 987.957 kb on + strand at 987.965 kb on - strand at 988.046 kb on - strand at 988.093 kb on + strand at 988.093 kb on + strand at 988.096 kb on - strand at 988.101 kb on - strand at 988.101 kb on - strand at 988.101 kb on - strand at 988.101 kb on - strand at 988.112 kb on + strand at 988.120 kb on - strand at 988.144 kb on + strand, within Synpcc7942_0979 at 988.144 kb on + strand, within Synpcc7942_0979 at 988.152 kb on - strand, within Synpcc7942_0979 at 988.166 kb on + strand, within Synpcc7942_0979 at 988.190 kb on - strand, within Synpcc7942_0979 at 988.278 kb on + strand, within Synpcc7942_0979 at 988.286 kb on - strand, within Synpcc7942_0979 at 988.286 kb on - strand, within Synpcc7942_0979 at 988.311 kb on + strand, within Synpcc7942_0979 at 988.364 kb on + strand, within Synpcc7942_0979 at 988.364 kb on + strand, within Synpcc7942_0979 at 988.372 kb on - strand, within Synpcc7942_0979 at 988.440 kb on + strand, within Synpcc7942_0979 at 988.440 kb on + strand, within Synpcc7942_0979 at 988.448 kb on - strand, within Synpcc7942_0979 at 988.504 kb on - strand, within Synpcc7942_0979 at 988.543 kb on - strand at 988.566 kb on - strand at 988.626 kb on + strand at 988.653 kb on + strand at 988.696 kb on - strand at 988.696 kb on - strand at 988.698 kb on + strand at 988.726 kb on + strand, within Synpcc7942_0980 at 988.729 kb on - strand, within Synpcc7942_0980 at 988.734 kb on - strand, within Synpcc7942_0980 at 988.752 kb on + strand, within Synpcc7942_0980 at 988.769 kb on - strand, within Synpcc7942_0980 at 988.780 kb on + strand, within Synpcc7942_0980 at 988.780 kb on + strand, within Synpcc7942_0980 at 988.788 kb on - strand, within Synpcc7942_0980 at 988.798 kb on + strand, within Synpcc7942_0980 at 988.798 kb on + strand, within Synpcc7942_0980 at 989.058 kb on - strand, within Synpcc7942_0980 at 989.095 kb on - strand, within Synpcc7942_0980 at 989.098 kb on + strand, within Synpcc7942_0980 at 989.098 kb on + strand, within Synpcc7942_0980 at 989.111 kb on - strand, within Synpcc7942_0980 at 989.122 kb on + strand, within Synpcc7942_0980 at 989.132 kb on + strand, within Synpcc7942_0980 at 989.135 kb on - strand, within Synpcc7942_0980 at 989.140 kb on - strand at 989.140 kb on - strand, within Synpcc7942_0980 at 989.140 kb on - strand, within Synpcc7942_0980 at 989.140 kb on - strand, within Synpcc7942_0980 at 989.140 kb on - strand, within Synpcc7942_0980 at 989.146 kb on + strand, within Synpcc7942_0980 at 989.146 kb on + strand, within Synpcc7942_0980 at 989.154 kb on - strand, within Synpcc7942_0980 at 989.154 kb on - strand, within Synpcc7942_0980 at 989.158 kb on - strand, within Synpcc7942_0980 at 989.168 kb on + strand, within Synpcc7942_0980 at 989.168 kb on + strand, within Synpcc7942_0980 at 989.168 kb on + strand, within Synpcc7942_0980 at 989.168 kb on + strand, within Synpcc7942_0980 at 989.168 kb on + strand, within Synpcc7942_0980 at 989.168 kb on + strand, within Synpcc7942_0980 at 989.168 kb on + strand, within Synpcc7942_0980 at 989.171 kb on - strand, within Synpcc7942_0980 at 989.176 kb on - strand, within Synpcc7942_0980 at 989.176 kb on - strand, within Synpcc7942_0980 at 989.176 kb on - strand, within Synpcc7942_0980 at 989.176 kb on - strand, within Synpcc7942_0980 at 989.176 kb on - strand, within Synpcc7942_0980 at 989.184 kb on + strand, within Synpcc7942_0980 at 989.186 kb on - strand, within Synpcc7942_0980 at 989.195 kb on - strand, within Synpcc7942_0980 at 989.202 kb on - strand, within Synpcc7942_0980 at 989.204 kb on + strand, within Synpcc7942_0980 at 989.209 kb on + strand, within Synpcc7942_0980 at 989.212 kb on - strand, within Synpcc7942_0980 at 989.222 kb on - strand at 989.222 kb on - strand at 989.222 kb on - strand at 989.224 kb on + strand at 989.249 kb on + strand at 989.281 kb on - strand at 989.742 kb on + strand at 989.756 kb on + strand at 989.762 kb on - strand at 989.763 kb on - strand at 989.774 kb on - strand at 989.837 kb on + strand at 989.965 kb on + strand at 989.970 kb on + strand, within Synpcc7942_0981 at 989.970 kb on + strand, within Synpcc7942_0981 at 989.982 kb on - strand, within Synpcc7942_0981 at 990.077 kb on - strand, within Synpcc7942_0981 at 990.125 kb on - strand, within Synpcc7942_0981 at 990.137 kb on - strand, within Synpcc7942_0981 at 990.205 kb on + strand, within Synpcc7942_0981 at 990.211 kb on - strand, within Synpcc7942_0981 at 990.213 kb on - strand, within Synpcc7942_0981 at 990.235 kb on - strand, within Synpcc7942_0981 at 990.244 kb on + strand, within Synpcc7942_0981 at 990.263 kb on - strand, within Synpcc7942_0981 at 990.263 kb on - strand, within Synpcc7942_0981
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.00033203125 mg/ml remove 987,661 + +1.5 987,774 + -1.1 987,787 - -0.1 987,871 + +1.5 987,874 - +0.9 987,881 + -1.7 987,887 + -0.1 987,910 + +0.7 987,919 - -0.1 987,926 - +0.9 987,957 + +0.9 987,965 - +0.5 988,046 - +1.7 988,093 + +0.5 988,093 + +0.3 988,096 - +0.1 988,101 - +0.5 988,101 - +1.9 988,101 - +1.6 988,101 - -0.1 988,112 + -0.7 988,120 - +0.5 988,144 + Synpcc7942_0979 0.14 +0.1 988,144 + Synpcc7942_0979 0.14 -0.4 988,152 - Synpcc7942_0979 0.15 +1.9 988,166 + Synpcc7942_0979 0.18 -1.1 988,190 - Synpcc7942_0979 0.23 +0.9 988,278 + Synpcc7942_0979 0.40 -0.1 988,286 - Synpcc7942_0979 0.42 +0.9 988,286 - Synpcc7942_0979 0.42 -0.1 988,311 + Synpcc7942_0979 0.47 +1.3 988,364 + Synpcc7942_0979 0.58 -2.4 988,364 + Synpcc7942_0979 0.58 +2.2 988,372 - Synpcc7942_0979 0.59 +1.5 988,440 + Synpcc7942_0979 0.73 -1.1 988,440 + Synpcc7942_0979 0.73 +0.2 988,448 - Synpcc7942_0979 0.74 -1.1 988,504 - Synpcc7942_0979 0.85 +1.2 988,543 - -0.9 988,566 - +0.9 988,626 + +1.2 988,653 + +0.9 988,696 - -0.7 988,696 - -0.7 988,698 + -0.1 988,726 + Synpcc7942_0980 0.12 +0.3 988,729 - Synpcc7942_0980 0.12 +0.6 988,734 - Synpcc7942_0980 0.13 -0.1 988,752 + Synpcc7942_0980 0.16 -0.1 988,769 - Synpcc7942_0980 0.19 +0.4 988,780 + Synpcc7942_0980 0.20 -0.7 988,780 + Synpcc7942_0980 0.20 -1.1 988,788 - Synpcc7942_0980 0.22 -1.1 988,798 + Synpcc7942_0980 0.23 +2.1 988,798 + Synpcc7942_0980 0.23 +0.5 989,058 - Synpcc7942_0980 0.65 -1.4 989,095 - Synpcc7942_0980 0.71 +0.7 989,098 + Synpcc7942_0980 0.71 +0.1 989,098 + Synpcc7942_0980 0.71 +0.9 989,111 - Synpcc7942_0980 0.73 +0.7 989,122 + Synpcc7942_0980 0.75 +0.6 989,132 + Synpcc7942_0980 0.77 -1.7 989,135 - Synpcc7942_0980 0.77 +0.7 989,140 - -1.1 989,140 - Synpcc7942_0980 0.78 +0.7 989,140 - Synpcc7942_0980 0.78 -0.1 989,140 - Synpcc7942_0980 0.78 -0.7 989,140 - Synpcc7942_0980 0.78 +0.2 989,146 + Synpcc7942_0980 0.79 +0.9 989,146 + Synpcc7942_0980 0.79 -0.1 989,154 - Synpcc7942_0980 0.80 -0.1 989,154 - Synpcc7942_0980 0.80 +0.6 989,158 - Synpcc7942_0980 0.81 -1.7 989,168 + Synpcc7942_0980 0.83 -1.7 989,168 + Synpcc7942_0980 0.83 +0.9 989,168 + Synpcc7942_0980 0.83 +0.9 989,168 + Synpcc7942_0980 0.83 +1.1 989,168 + Synpcc7942_0980 0.83 +0.3 989,168 + Synpcc7942_0980 0.83 +1.7 989,168 + Synpcc7942_0980 0.83 +0.7 989,171 - Synpcc7942_0980 0.83 +0.9 989,176 - Synpcc7942_0980 0.84 -0.7 989,176 - Synpcc7942_0980 0.84 +0.9 989,176 - Synpcc7942_0980 0.84 +1.1 989,176 - Synpcc7942_0980 0.84 -1.7 989,176 - Synpcc7942_0980 0.84 -1.1 989,184 + Synpcc7942_0980 0.85 -0.2 989,186 - Synpcc7942_0980 0.85 -0.1 989,195 - Synpcc7942_0980 0.87 -0.1 989,202 - Synpcc7942_0980 0.88 -0.1 989,204 + Synpcc7942_0980 0.88 -0.2 989,209 + Synpcc7942_0980 0.89 +1.1 989,212 - Synpcc7942_0980 0.90 -0.1 989,222 - -0.5 989,222 - +1.5 989,222 - +0.5 989,224 + +1.1 989,249 + -0.1 989,281 - +1.5 989,742 + -0.1 989,756 + -1.1 989,762 - -1.7 989,763 - -1.1 989,774 - -0.1 989,837 + -1.1 989,965 + -1.1 989,970 + Synpcc7942_0981 0.10 -0.1 989,970 + Synpcc7942_0981 0.10 -2.9 989,982 - Synpcc7942_0981 0.11 -1.7 990,077 - Synpcc7942_0981 0.16 -1.1 990,125 - Synpcc7942_0981 0.19 -1.1 990,137 - Synpcc7942_0981 0.20 -1.1 990,205 + Synpcc7942_0981 0.24 -2.4 990,211 - Synpcc7942_0981 0.24 -1.1 990,213 - Synpcc7942_0981 0.24 -1.1 990,235 - Synpcc7942_0981 0.26 -2.1 990,244 + Synpcc7942_0981 0.26 -0.1 990,263 - Synpcc7942_0981 0.27 -1.1 990,263 - Synpcc7942_0981 0.27 -1.7
Or see this region's nucleotide sequence