Experiment: Chloramphenicol 0.00033203125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0589 and Synpcc7942_0590 are separated by 46 nucleotides Synpcc7942_0590 and Synpcc7942_0591 are separated by 4 nucleotides Synpcc7942_0591 and pfkA are separated by 13 nucleotides pfkA and Synpcc7942_0593 are separated by 27 nucleotides Synpcc7942_0593 and Synpcc7942_0594 are separated by 30 nucleotides
Synpcc7942_0589: Synpcc7942_0589 - Fe-S-cluster oxidoreductase-like, at 577,911 to 578,573
_0589
Synpcc7942_0590: Synpcc7942_0590 - membrane protein-like, at 578,620 to 578,967
_0590
Synpcc7942_0591: Synpcc7942_0591 - membrane protein-like, at 578,972 to 579,298
_0591
Synpcc7942_0592: pfkA - 6-phosphofructokinase, at 579,312 to 580,394
pfkA
Synpcc7942_0593: Synpcc7942_0593 - hypothetical protein, at 580,422 to 581,174
_0593
Synpcc7942_0594: Synpcc7942_0594 - hypothetical protein, at 581,205 to 582,881
_0594
Position (kb) 579
580
581 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 578.555 kb on + strand at 578.555 kb on + strand at 578.555 kb on + strand at 578.575 kb on + strand at 578.575 kb on + strand at 578.575 kb on - strand at 578.666 kb on - strand, within Synpcc7942_0590 at 578.679 kb on + strand, within Synpcc7942_0590 at 578.679 kb on + strand, within Synpcc7942_0590 at 578.693 kb on - strand, within Synpcc7942_0590 at 578.759 kb on - strand, within Synpcc7942_0590 at 578.759 kb on - strand, within Synpcc7942_0590 at 578.763 kb on + strand, within Synpcc7942_0590 at 578.787 kb on + strand, within Synpcc7942_0590 at 578.787 kb on + strand, within Synpcc7942_0590 at 578.795 kb on - strand, within Synpcc7942_0590 at 578.797 kb on + strand, within Synpcc7942_0590 at 578.818 kb on + strand, within Synpcc7942_0590 at 578.818 kb on + strand, within Synpcc7942_0590 at 578.826 kb on - strand, within Synpcc7942_0590 at 578.826 kb on - strand, within Synpcc7942_0590 at 578.888 kb on + strand, within Synpcc7942_0590 at 578.888 kb on + strand, within Synpcc7942_0590 at 578.916 kb on + strand, within Synpcc7942_0590 at 578.932 kb on + strand, within Synpcc7942_0590 at 578.932 kb on + strand, within Synpcc7942_0590 at 578.948 kb on + strand at 578.970 kb on - strand at 579.066 kb on + strand, within Synpcc7942_0591 at 579.136 kb on + strand, within Synpcc7942_0591 at 579.137 kb on + strand, within Synpcc7942_0591 at 579.144 kb on - strand, within Synpcc7942_0591 at 579.144 kb on - strand, within Synpcc7942_0591 at 579.158 kb on + strand, within Synpcc7942_0591 at 579.216 kb on + strand, within Synpcc7942_0591 at 579.237 kb on + strand, within Synpcc7942_0591 at 579.285 kb on + strand at 579.292 kb on + strand at 579.292 kb on + strand at 579.293 kb on + strand at 579.294 kb on - strand at 579.294 kb on - strand at 579.300 kb on - strand at 579.304 kb on + strand at 579.326 kb on + strand at 579.328 kb on + strand at 579.331 kb on + strand at 579.354 kb on + strand at 579.358 kb on - strand at 579.387 kb on + strand at 579.394 kb on - strand at 579.411 kb on - strand at 579.419 kb on + strand at 579.427 kb on - strand, within pfkA at 579.427 kb on - strand, within pfkA at 579.427 kb on - strand, within pfkA at 579.476 kb on + strand, within pfkA at 579.483 kb on - strand, within pfkA at 579.513 kb on + strand, within pfkA at 579.525 kb on + strand, within pfkA at 579.531 kb on + strand, within pfkA at 579.544 kb on + strand, within pfkA at 579.575 kb on - strand, within pfkA at 579.577 kb on - strand, within pfkA at 579.599 kb on - strand, within pfkA at 579.616 kb on + strand, within pfkA at 579.619 kb on - strand, within pfkA at 579.634 kb on + strand, within pfkA at 579.634 kb on + strand, within pfkA at 579.642 kb on - strand, within pfkA at 579.645 kb on + strand, within pfkA at 579.671 kb on + strand, within pfkA at 579.685 kb on - strand, within pfkA at 579.700 kb on - strand, within pfkA at 579.703 kb on + strand, within pfkA at 579.732 kb on - strand, within pfkA at 579.752 kb on + strand, within pfkA at 579.755 kb on + strand, within pfkA at 579.763 kb on - strand, within pfkA at 579.804 kb on + strand at 579.872 kb on - strand, within pfkA at 579.873 kb on - strand, within pfkA at 579.873 kb on - strand, within pfkA at 579.902 kb on + strand, within pfkA at 579.902 kb on + strand, within pfkA at 579.910 kb on - strand, within pfkA at 579.910 kb on - strand, within pfkA at 579.910 kb on - strand, within pfkA at 579.921 kb on - strand, within pfkA at 579.940 kb on - strand, within pfkA at 579.942 kb on + strand, within pfkA at 579.961 kb on - strand, within pfkA at 579.966 kb on + strand, within pfkA at 579.988 kb on - strand, within pfkA at 580.091 kb on - strand, within pfkA at 580.092 kb on + strand, within pfkA at 580.115 kb on - strand, within pfkA at 580.172 kb on - strand, within pfkA at 580.174 kb on + strand, within pfkA at 580.196 kb on + strand, within pfkA at 580.196 kb on + strand, within pfkA at 580.196 kb on + strand, within pfkA at 580.204 kb on - strand, within pfkA at 580.204 kb on - strand, within pfkA at 580.204 kb on - strand, within pfkA at 580.204 kb on - strand, within pfkA at 580.204 kb on - strand, within pfkA at 580.204 kb on - strand, within pfkA at 580.228 kb on - strand, within pfkA at 580.228 kb on - strand, within pfkA at 580.241 kb on - strand, within pfkA at 580.246 kb on + strand, within pfkA at 580.256 kb on + strand, within pfkA at 580.257 kb on + strand, within pfkA at 580.257 kb on + strand, within pfkA at 580.257 kb on + strand, within pfkA at 580.257 kb on + strand, within pfkA at 580.264 kb on - strand, within pfkA at 580.266 kb on + strand, within pfkA at 580.338 kb on + strand at 580.343 kb on + strand at 580.344 kb on - strand at 580.373 kb on + strand at 580.401 kb on + strand at 580.403 kb on - strand at 580.411 kb on - strand at 580.413 kb on + strand at 580.421 kb on - strand at 580.489 kb on - strand at 580.505 kb on - strand, within Synpcc7942_0593 at 580.520 kb on + strand, within Synpcc7942_0593 at 580.535 kb on + strand, within Synpcc7942_0593 at 580.552 kb on + strand, within Synpcc7942_0593 at 580.602 kb on + strand, within Synpcc7942_0593 at 580.609 kb on - strand, within Synpcc7942_0593 at 580.612 kb on + strand, within Synpcc7942_0593 at 580.620 kb on + strand, within Synpcc7942_0593 at 580.620 kb on - strand, within Synpcc7942_0593 at 580.620 kb on - strand, within Synpcc7942_0593 at 580.639 kb on - strand, within Synpcc7942_0593 at 580.644 kb on - strand, within Synpcc7942_0593 at 580.648 kb on + strand, within Synpcc7942_0593 at 580.650 kb on + strand, within Synpcc7942_0593 at 580.656 kb on - strand, within Synpcc7942_0593 at 580.665 kb on + strand, within Synpcc7942_0593 at 580.665 kb on + strand, within Synpcc7942_0593 at 580.665 kb on + strand, within Synpcc7942_0593 at 580.712 kb on - strand, within Synpcc7942_0593 at 580.737 kb on - strand, within Synpcc7942_0593 at 580.739 kb on + strand, within Synpcc7942_0593 at 580.747 kb on - strand, within Synpcc7942_0593 at 580.765 kb on - strand, within Synpcc7942_0593 at 580.794 kb on - strand, within Synpcc7942_0593 at 580.814 kb on - strand at 580.827 kb on + strand, within Synpcc7942_0593 at 580.827 kb on + strand, within Synpcc7942_0593 at 580.829 kb on + strand, within Synpcc7942_0593 at 580.835 kb on - strand, within Synpcc7942_0593 at 580.845 kb on + strand, within Synpcc7942_0593 at 580.853 kb on - strand, within Synpcc7942_0593 at 580.853 kb on - strand, within Synpcc7942_0593 at 580.863 kb on + strand, within Synpcc7942_0593 at 580.865 kb on - strand, within Synpcc7942_0593 at 580.884 kb on + strand, within Synpcc7942_0593 at 580.891 kb on + strand, within Synpcc7942_0593 at 580.892 kb on - strand, within Synpcc7942_0593 at 580.908 kb on - strand, within Synpcc7942_0593 at 580.949 kb on + strand, within Synpcc7942_0593 at 580.976 kb on + strand, within Synpcc7942_0593 at 580.993 kb on - strand, within Synpcc7942_0593 at 581.011 kb on + strand, within Synpcc7942_0593 at 581.026 kb on - strand, within Synpcc7942_0593 at 581.031 kb on - strand, within Synpcc7942_0593 at 581.031 kb on - strand, within Synpcc7942_0593 at 581.045 kb on + strand, within Synpcc7942_0593 at 581.060 kb on - strand, within Synpcc7942_0593 at 581.064 kb on + strand, within Synpcc7942_0593 at 581.072 kb on + strand, within Synpcc7942_0593 at 581.072 kb on - strand, within Synpcc7942_0593 at 581.078 kb on - strand, within Synpcc7942_0593 at 581.079 kb on + strand, within Synpcc7942_0593 at 581.079 kb on + strand, within Synpcc7942_0593 at 581.079 kb on + strand, within Synpcc7942_0593 at 581.087 kb on - strand, within Synpcc7942_0593 at 581.097 kb on - strand, within Synpcc7942_0593 at 581.119 kb on - strand at 581.121 kb on + strand at 581.124 kb on - strand at 581.129 kb on - strand at 581.129 kb on - strand at 581.143 kb on - strand at 581.143 kb on - strand at 581.145 kb on - strand at 581.145 kb on - strand at 581.213 kb on + strand at 581.221 kb on - strand at 581.256 kb on + strand at 581.281 kb on + strand at 581.289 kb on - strand at 581.302 kb on - strand at 581.314 kb on - strand at 581.314 kb on - strand at 581.330 kb on + strand at 581.330 kb on + strand at 581.366 kb on + strand at 581.366 kb on + strand at 581.366 kb on + strand at 581.366 kb on + strand at 581.374 kb on - strand, within Synpcc7942_0594 at 581.374 kb on - strand, within Synpcc7942_0594 at 581.380 kb on - strand, within Synpcc7942_0594
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.00033203125 mg/ml remove 578,555 + -0.8 578,555 + +0.5 578,555 + +1.5 578,575 + -0.1 578,575 + +0.2 578,575 - -1.2 578,666 - Synpcc7942_0590 0.13 +2.4 578,679 + Synpcc7942_0590 0.17 -0.1 578,679 + Synpcc7942_0590 0.17 -1.1 578,693 - Synpcc7942_0590 0.21 +0.2 578,759 - Synpcc7942_0590 0.40 -2.4 578,759 - Synpcc7942_0590 0.40 -0.4 578,763 + Synpcc7942_0590 0.41 -1.7 578,787 + Synpcc7942_0590 0.48 -0.4 578,787 + Synpcc7942_0590 0.48 -0.1 578,795 - Synpcc7942_0590 0.50 -1.1 578,797 + Synpcc7942_0590 0.51 +0.9 578,818 + Synpcc7942_0590 0.57 -1.4 578,818 + Synpcc7942_0590 0.57 +0.9 578,826 - Synpcc7942_0590 0.59 -1.9 578,826 - Synpcc7942_0590 0.59 -0.1 578,888 + Synpcc7942_0590 0.77 -0.5 578,888 + Synpcc7942_0590 0.77 -1.7 578,916 + Synpcc7942_0590 0.85 -2.4 578,932 + Synpcc7942_0590 0.90 +3.7 578,932 + Synpcc7942_0590 0.90 +0.6 578,948 + +0.2 578,970 - -0.1 579,066 + Synpcc7942_0591 0.29 -2.1 579,136 + Synpcc7942_0591 0.50 +0.9 579,137 + Synpcc7942_0591 0.50 -0.6 579,144 - Synpcc7942_0591 0.53 -0.8 579,144 - Synpcc7942_0591 0.53 -0.1 579,158 + Synpcc7942_0591 0.57 -0.1 579,216 + Synpcc7942_0591 0.75 +1.2 579,237 + Synpcc7942_0591 0.81 +0.8 579,285 + +0.3 579,292 + +0.9 579,292 + -0.1 579,293 + +1.3 579,294 - +0.9 579,294 - -0.1 579,300 - -1.1 579,304 + +1.2 579,326 + +0.9 579,328 + -0.1 579,331 + +1.2 579,354 + +0.5 579,358 - -1.1 579,387 + -0.1 579,394 - +1.5 579,411 - +0.3 579,419 + +0.3 579,427 - pfkA Synpcc7942_0592 0.11 -0.1 579,427 - pfkA Synpcc7942_0592 0.11 +1.1 579,427 - pfkA Synpcc7942_0592 0.11 -0.1 579,476 + pfkA Synpcc7942_0592 0.15 +1.2 579,483 - pfkA Synpcc7942_0592 0.16 +0.3 579,513 + pfkA Synpcc7942_0592 0.19 -0.1 579,525 + pfkA Synpcc7942_0592 0.20 +0.1 579,531 + pfkA Synpcc7942_0592 0.20 +0.2 579,544 + pfkA Synpcc7942_0592 0.21 -1.1 579,575 - pfkA Synpcc7942_0592 0.24 +0.3 579,577 - pfkA Synpcc7942_0592 0.24 +0.3 579,599 - pfkA Synpcc7942_0592 0.27 -1.1 579,616 + pfkA Synpcc7942_0592 0.28 +0.6 579,619 - pfkA Synpcc7942_0592 0.28 -0.1 579,634 + pfkA Synpcc7942_0592 0.30 +1.8 579,634 + pfkA Synpcc7942_0592 0.30 +2.7 579,642 - pfkA Synpcc7942_0592 0.30 -0.1 579,645 + pfkA Synpcc7942_0592 0.31 +1.6 579,671 + pfkA Synpcc7942_0592 0.33 -1.1 579,685 - pfkA Synpcc7942_0592 0.34 -0.1 579,700 - pfkA Synpcc7942_0592 0.36 +2.2 579,703 + pfkA Synpcc7942_0592 0.36 -0.1 579,732 - pfkA Synpcc7942_0592 0.39 -1.7 579,752 + pfkA Synpcc7942_0592 0.41 +0.7 579,755 + pfkA Synpcc7942_0592 0.41 +1.2 579,763 - pfkA Synpcc7942_0592 0.42 -0.1 579,804 + -0.1 579,872 - pfkA Synpcc7942_0592 0.52 +2.2 579,873 - pfkA Synpcc7942_0592 0.52 +0.6 579,873 - pfkA Synpcc7942_0592 0.52 -1.7 579,902 + pfkA Synpcc7942_0592 0.54 +1.1 579,902 + pfkA Synpcc7942_0592 0.54 -0.1 579,910 - pfkA Synpcc7942_0592 0.55 +1.5 579,910 - pfkA Synpcc7942_0592 0.55 +0.6 579,910 - pfkA Synpcc7942_0592 0.55 +0.7 579,921 - pfkA Synpcc7942_0592 0.56 +2.1 579,940 - pfkA Synpcc7942_0592 0.58 -1.1 579,942 + pfkA Synpcc7942_0592 0.58 +1.5 579,961 - pfkA Synpcc7942_0592 0.60 +0.5 579,966 + pfkA Synpcc7942_0592 0.60 -0.1 579,988 - pfkA Synpcc7942_0592 0.62 -0.1 580,091 - pfkA Synpcc7942_0592 0.72 +0.9 580,092 + pfkA Synpcc7942_0592 0.72 -1.1 580,115 - pfkA Synpcc7942_0592 0.74 +0.6 580,172 - pfkA Synpcc7942_0592 0.79 +0.1 580,174 + pfkA Synpcc7942_0592 0.80 +0.6 580,196 + pfkA Synpcc7942_0592 0.82 -0.1 580,196 + pfkA Synpcc7942_0592 0.82 -0.8 580,196 + pfkA Synpcc7942_0592 0.82 +0.9 580,204 - pfkA Synpcc7942_0592 0.82 +1.5 580,204 - pfkA Synpcc7942_0592 0.82 -1.4 580,204 - pfkA Synpcc7942_0592 0.82 +0.9 580,204 - pfkA Synpcc7942_0592 0.82 -0.1 580,204 - pfkA Synpcc7942_0592 0.82 +1.3 580,204 - pfkA Synpcc7942_0592 0.82 -2.1 580,228 - pfkA Synpcc7942_0592 0.85 -0.1 580,228 - pfkA Synpcc7942_0592 0.85 +0.6 580,241 - pfkA Synpcc7942_0592 0.86 -0.1 580,246 + pfkA Synpcc7942_0592 0.86 +0.9 580,256 + pfkA Synpcc7942_0592 0.87 -1.1 580,257 + pfkA Synpcc7942_0592 0.87 +1.5 580,257 + pfkA Synpcc7942_0592 0.87 +0.8 580,257 + pfkA Synpcc7942_0592 0.87 +0.2 580,257 + pfkA Synpcc7942_0592 0.87 -0.1 580,264 - pfkA Synpcc7942_0592 0.88 +1.2 580,266 + pfkA Synpcc7942_0592 0.88 +0.9 580,338 + +2.9 580,343 + +0.8 580,344 - +0.1 580,373 + +0.9 580,401 + -0.1 580,403 - +1.5 580,411 - -0.1 580,413 + +0.5 580,421 - -0.1 580,489 - +0.4 580,505 - Synpcc7942_0593 0.11 -0.8 580,520 + Synpcc7942_0593 0.13 +1.1 580,535 + Synpcc7942_0593 0.15 +0.9 580,552 + Synpcc7942_0593 0.17 -0.1 580,602 + Synpcc7942_0593 0.24 -0.5 580,609 - Synpcc7942_0593 0.25 +1.2 580,612 + Synpcc7942_0593 0.25 -0.3 580,620 + Synpcc7942_0593 0.26 +2.2 580,620 - Synpcc7942_0593 0.26 +2.9 580,620 - Synpcc7942_0593 0.26 +1.5 580,639 - Synpcc7942_0593 0.29 +2.1 580,644 - Synpcc7942_0593 0.29 +2.2 580,648 + Synpcc7942_0593 0.30 -1.1 580,650 + Synpcc7942_0593 0.30 -0.1 580,656 - Synpcc7942_0593 0.31 +0.9 580,665 + Synpcc7942_0593 0.32 -0.1 580,665 + Synpcc7942_0593 0.32 +0.7 580,665 + Synpcc7942_0593 0.32 -0.6 580,712 - Synpcc7942_0593 0.39 -1.1 580,737 - Synpcc7942_0593 0.42 +0.1 580,739 + Synpcc7942_0593 0.42 -0.1 580,747 - Synpcc7942_0593 0.43 -0.4 580,765 - Synpcc7942_0593 0.46 +0.5 580,794 - Synpcc7942_0593 0.49 +1.5 580,814 - -1.1 580,827 + Synpcc7942_0593 0.54 +1.5 580,827 + Synpcc7942_0593 0.54 +1.9 580,829 + Synpcc7942_0593 0.54 +3.2 580,835 - Synpcc7942_0593 0.55 +2.2 580,845 + Synpcc7942_0593 0.56 -0.1 580,853 - Synpcc7942_0593 0.57 -0.7 580,853 - Synpcc7942_0593 0.57 -0.7 580,863 + Synpcc7942_0593 0.59 +0.7 580,865 - Synpcc7942_0593 0.59 -0.5 580,884 + Synpcc7942_0593 0.61 +1.5 580,891 + Synpcc7942_0593 0.62 +2.2 580,892 - Synpcc7942_0593 0.62 -0.7 580,908 - Synpcc7942_0593 0.65 +0.3 580,949 + Synpcc7942_0593 0.70 +0.3 580,976 + Synpcc7942_0593 0.74 +1.2 580,993 - Synpcc7942_0593 0.76 -0.1 581,011 + Synpcc7942_0593 0.78 -1.1 581,026 - Synpcc7942_0593 0.80 +1.8 581,031 - Synpcc7942_0593 0.81 +0.4 581,031 - Synpcc7942_0593 0.81 -0.1 581,045 + Synpcc7942_0593 0.83 -2.7 581,060 - Synpcc7942_0593 0.85 +2.5 581,064 + Synpcc7942_0593 0.85 +1.1 581,072 + Synpcc7942_0593 0.86 -0.5 581,072 - Synpcc7942_0593 0.86 +0.5 581,078 - Synpcc7942_0593 0.87 +1.5 581,079 + Synpcc7942_0593 0.87 -1.1 581,079 + Synpcc7942_0593 0.87 -0.1 581,079 + Synpcc7942_0593 0.87 +0.3 581,087 - Synpcc7942_0593 0.88 -0.1 581,097 - Synpcc7942_0593 0.90 +1.9 581,119 - +0.9 581,121 + +2.0 581,124 - +1.5 581,129 - +0.4 581,129 - +1.4 581,143 - -1.7 581,143 - +0.1 581,145 - +2.2 581,145 - +1.9 581,213 + +0.7 581,221 - -0.1 581,256 + +0.7 581,281 + +0.3 581,289 - +3.6 581,302 - +0.7 581,314 - +1.7 581,314 - -0.1 581,330 + +1.1 581,330 + +2.7 581,366 + +0.7 581,366 + +2.5 581,366 + +0.9 581,366 + +1.1 581,374 - Synpcc7942_0594 0.10 +1.3 581,374 - Synpcc7942_0594 0.10 -0.1 581,380 - Synpcc7942_0594 0.10 +0.9
Or see this region's nucleotide sequence