Experiment: Chloramphenicol 0.00033203125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gidB and Synpcc7942_0268 overlap by 4 nucleotides Synpcc7942_0268 and Synpcc7942_0269 are separated by 11 nucleotides
Synpcc7942_0267: gidB - glucose-inhibited division protein B, at 263,757 to 264,485
gidB
Synpcc7942_0268: Synpcc7942_0268 - hypothetical protein, at 264,482 to 264,964
_0268
Synpcc7942_0269: Synpcc7942_0269 - hypothetical protein, at 264,976 to 265,857
_0269
Position (kb) 264
265 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 263.525 kb on - strand at 263.603 kb on + strand at 263.603 kb on + strand at 263.603 kb on + strand at 263.603 kb on + strand at 263.603 kb on + strand at 263.603 kb on + strand at 263.603 kb on + strand at 263.609 kb on - strand at 263.611 kb on - strand at 263.611 kb on - strand at 263.611 kb on - strand at 263.611 kb on - strand at 263.611 kb on - strand at 263.611 kb on - strand at 263.611 kb on - strand at 263.611 kb on - strand at 263.611 kb on - strand at 263.611 kb on - strand at 263.611 kb on - strand at 263.621 kb on + strand at 263.623 kb on - strand at 263.624 kb on - strand at 263.631 kb on + strand at 263.637 kb on + strand at 263.637 kb on + strand at 263.637 kb on + strand at 263.674 kb on + strand at 263.723 kb on + strand at 263.736 kb on + strand at 263.737 kb on + strand at 263.761 kb on + strand at 263.799 kb on + strand at 263.800 kb on + strand at 263.806 kb on - strand at 263.815 kb on + strand at 263.821 kb on - strand at 263.821 kb on - strand at 263.821 kb on - strand at 263.832 kb on + strand, within gidB at 263.847 kb on + strand, within gidB at 263.855 kb on - strand, within gidB at 263.896 kb on + strand, within gidB at 263.896 kb on + strand, within gidB at 263.939 kb on + strand, within gidB at 263.955 kb on + strand, within gidB at 264.013 kb on + strand, within gidB at 264.021 kb on - strand, within gidB at 264.041 kb on + strand, within gidB at 264.055 kb on - strand, within gidB at 264.060 kb on - strand, within gidB at 264.075 kb on - strand, within gidB at 264.100 kb on + strand, within gidB at 264.119 kb on + strand, within gidB at 264.119 kb on + strand, within gidB at 264.119 kb on - strand, within gidB at 264.153 kb on + strand, within gidB at 264.156 kb on + strand, within gidB at 264.186 kb on + strand, within gidB at 264.233 kb on + strand, within gidB at 264.234 kb on + strand, within gidB at 264.240 kb on - strand, within gidB at 264.244 kb on + strand, within gidB at 264.245 kb on - strand, within gidB at 264.246 kb on - strand, within gidB at 264.252 kb on - strand, within gidB at 264.278 kb on + strand, within gidB at 264.281 kb on - strand, within gidB at 264.283 kb on + strand, within gidB at 264.322 kb on + strand, within gidB at 264.330 kb on - strand, within gidB at 264.377 kb on + strand, within gidB at 264.383 kb on + strand, within gidB at 264.396 kb on - strand, within gidB at 264.401 kb on + strand, within gidB at 264.401 kb on + strand, within gidB at 264.401 kb on + strand, within gidB at 264.403 kb on + strand, within gidB at 264.413 kb on + strand at 264.436 kb on - strand at 264.459 kb on - strand at 264.466 kb on + strand at 264.474 kb on - strand at 264.497 kb on - strand at 264.509 kb on + strand at 264.522 kb on + strand at 264.529 kb on + strand at 264.535 kb on - strand, within Synpcc7942_0268 at 264.544 kb on + strand, within Synpcc7942_0268 at 264.553 kb on + strand, within Synpcc7942_0268 at 264.553 kb on + strand, within Synpcc7942_0268 at 264.579 kb on - strand, within Synpcc7942_0268 at 264.595 kb on - strand, within Synpcc7942_0268 at 264.609 kb on + strand, within Synpcc7942_0268 at 264.609 kb on + strand, within Synpcc7942_0268 at 264.617 kb on - strand, within Synpcc7942_0268 at 264.617 kb on - strand, within Synpcc7942_0268 at 264.622 kb on - strand, within Synpcc7942_0268 at 264.624 kb on + strand, within Synpcc7942_0268 at 264.632 kb on - strand, within Synpcc7942_0268 at 264.652 kb on + strand, within Synpcc7942_0268 at 264.652 kb on + strand, within Synpcc7942_0268 at 264.660 kb on - strand, within Synpcc7942_0268 at 264.680 kb on + strand, within Synpcc7942_0268 at 264.695 kb on + strand, within Synpcc7942_0268 at 264.715 kb on + strand, within Synpcc7942_0268 at 264.762 kb on - strand, within Synpcc7942_0268 at 264.794 kb on - strand, within Synpcc7942_0268 at 264.813 kb on + strand, within Synpcc7942_0268 at 264.821 kb on - strand, within Synpcc7942_0268 at 264.835 kb on + strand, within Synpcc7942_0268 at 264.835 kb on + strand, within Synpcc7942_0268 at 264.839 kb on - strand, within Synpcc7942_0268 at 264.849 kb on + strand, within Synpcc7942_0268 at 264.857 kb on - strand, within Synpcc7942_0268 at 264.857 kb on - strand, within Synpcc7942_0268 at 264.859 kb on + strand, within Synpcc7942_0268 at 264.871 kb on + strand, within Synpcc7942_0268 at 264.872 kb on + strand, within Synpcc7942_0268 at 264.872 kb on + strand, within Synpcc7942_0268 at 264.872 kb on + strand, within Synpcc7942_0268 at 264.872 kb on + strand, within Synpcc7942_0268 at 264.872 kb on + strand, within Synpcc7942_0268 at 264.872 kb on + strand, within Synpcc7942_0268 at 264.872 kb on + strand, within Synpcc7942_0268 at 264.880 kb on - strand, within Synpcc7942_0268 at 264.880 kb on - strand, within Synpcc7942_0268 at 264.880 kb on - strand, within Synpcc7942_0268 at 264.880 kb on - strand, within Synpcc7942_0268 at 264.880 kb on - strand, within Synpcc7942_0268 at 264.880 kb on - strand, within Synpcc7942_0268 at 264.880 kb on - strand, within Synpcc7942_0268 at 264.880 kb on - strand, within Synpcc7942_0268 at 264.880 kb on - strand, within Synpcc7942_0268 at 264.883 kb on + strand, within Synpcc7942_0268 at 264.883 kb on + strand, within Synpcc7942_0268 at 264.883 kb on + strand, within Synpcc7942_0268 at 264.888 kb on + strand, within Synpcc7942_0268 at 264.891 kb on - strand, within Synpcc7942_0268 at 264.891 kb on - strand, within Synpcc7942_0268 at 264.891 kb on - strand, within Synpcc7942_0268 at 264.891 kb on - strand, within Synpcc7942_0268 at 264.893 kb on + strand, within Synpcc7942_0268 at 264.922 kb on - strand at 264.940 kb on + strand at 264.940 kb on + strand at 264.940 kb on + strand at 264.948 kb on - strand at 264.968 kb on + strand at 265.081 kb on - strand, within Synpcc7942_0269 at 265.103 kb on + strand, within Synpcc7942_0269 at 265.119 kb on + strand, within Synpcc7942_0269 at 265.148 kb on - strand, within Synpcc7942_0269 at 265.148 kb on - strand, within Synpcc7942_0269 at 265.175 kb on - strand, within Synpcc7942_0269 at 265.209 kb on + strand, within Synpcc7942_0269 at 265.218 kb on + strand, within Synpcc7942_0269 at 265.226 kb on - strand, within Synpcc7942_0269 at 265.231 kb on + strand at 265.280 kb on + strand, within Synpcc7942_0269 at 265.287 kb on - strand, within Synpcc7942_0269 at 265.322 kb on + strand, within Synpcc7942_0269 at 265.330 kb on - strand, within Synpcc7942_0269 at 265.330 kb on - strand, within Synpcc7942_0269 at 265.330 kb on - strand, within Synpcc7942_0269 at 265.330 kb on - strand, within Synpcc7942_0269 at 265.371 kb on - strand, within Synpcc7942_0269 at 265.377 kb on - strand, within Synpcc7942_0269 at 265.385 kb on + strand, within Synpcc7942_0269 at 265.395 kb on + strand, within Synpcc7942_0269 at 265.428 kb on + strand, within Synpcc7942_0269 at 265.436 kb on - strand, within Synpcc7942_0269 at 265.455 kb on + strand, within Synpcc7942_0269 at 265.463 kb on - strand, within Synpcc7942_0269 at 265.473 kb on + strand, within Synpcc7942_0269 at 265.478 kb on - strand, within Synpcc7942_0269 at 265.492 kb on + strand, within Synpcc7942_0269 at 265.492 kb on + strand, within Synpcc7942_0269 at 265.492 kb on + strand, within Synpcc7942_0269 at 265.500 kb on - strand, within Synpcc7942_0269 at 265.500 kb on - strand, within Synpcc7942_0269 at 265.521 kb on - strand, within Synpcc7942_0269 at 265.548 kb on + strand, within Synpcc7942_0269 at 265.559 kb on - strand, within Synpcc7942_0269 at 265.559 kb on - strand, within Synpcc7942_0269 at 265.559 kb on - strand, within Synpcc7942_0269 at 265.559 kb on - strand, within Synpcc7942_0269 at 265.593 kb on + strand, within Synpcc7942_0269 at 265.626 kb on - strand, within Synpcc7942_0269 at 265.626 kb on - strand, within Synpcc7942_0269 at 265.626 kb on - strand, within Synpcc7942_0269 at 265.626 kb on - strand, within Synpcc7942_0269 at 265.626 kb on - strand, within Synpcc7942_0269 at 265.626 kb on - strand, within Synpcc7942_0269 at 265.626 kb on - strand, within Synpcc7942_0269 at 265.649 kb on + strand, within Synpcc7942_0269 at 265.653 kb on + strand, within Synpcc7942_0269 at 265.654 kb on + strand, within Synpcc7942_0269 at 265.661 kb on - strand, within Synpcc7942_0269 at 265.661 kb on - strand, within Synpcc7942_0269 at 265.664 kb on + strand, within Synpcc7942_0269 at 265.664 kb on + strand, within Synpcc7942_0269 at 265.664 kb on + strand, within Synpcc7942_0269 at 265.741 kb on + strand, within Synpcc7942_0269 at 265.741 kb on + strand, within Synpcc7942_0269 at 265.741 kb on + strand at 265.749 kb on - strand, within Synpcc7942_0269 at 265.763 kb on - strand, within Synpcc7942_0269 at 265.805 kb on - strand at 265.815 kb on - strand at 265.853 kb on + strand at 265.869 kb on + strand at 265.875 kb on - strand at 265.877 kb on - strand at 265.911 kb on + strand at 265.911 kb on + strand at 265.911 kb on + strand at 265.919 kb on - strand at 265.924 kb on - strand at 265.936 kb on - strand at 265.945 kb on + strand at 265.948 kb on - strand at 265.948 kb on - strand at 265.959 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.00033203125 mg/ml remove 263,525 - +2.7 263,603 + -1.1 263,603 + +0.9 263,603 + +0.9 263,603 + -0.1 263,603 + -0.6 263,603 + +0.7 263,603 + +1.7 263,609 - +1.6 263,611 - -0.1 263,611 - +0.4 263,611 - +0.5 263,611 - +2.2 263,611 - -0.1 263,611 - +2.2 263,611 - +0.9 263,611 - -0.1 263,611 - +2.2 263,611 - -1.1 263,611 - -1.7 263,621 + +1.5 263,623 - -0.1 263,624 - +0.9 263,631 + -0.1 263,637 + +0.7 263,637 + +1.6 263,637 + +1.2 263,674 + +2.2 263,723 + +0.9 263,736 + +0.2 263,737 + -0.1 263,761 + +0.5 263,799 + -1.7 263,800 + -0.4 263,806 - -0.2 263,815 + +1.2 263,821 - +1.1 263,821 - +0.9 263,821 - +0.5 263,832 + gidB Synpcc7942_0267 0.10 +0.8 263,847 + gidB Synpcc7942_0267 0.12 -0.1 263,855 - gidB Synpcc7942_0267 0.13 -0.5 263,896 + gidB Synpcc7942_0267 0.19 -0.3 263,896 + gidB Synpcc7942_0267 0.19 +1.5 263,939 + gidB Synpcc7942_0267 0.25 -0.7 263,955 + gidB Synpcc7942_0267 0.27 -0.1 264,013 + gidB Synpcc7942_0267 0.35 +0.5 264,021 - gidB Synpcc7942_0267 0.36 +0.2 264,041 + gidB Synpcc7942_0267 0.39 +0.0 264,055 - gidB Synpcc7942_0267 0.41 -1.1 264,060 - gidB Synpcc7942_0267 0.42 -1.1 264,075 - gidB Synpcc7942_0267 0.44 +1.2 264,100 + gidB Synpcc7942_0267 0.47 +0.5 264,119 + gidB Synpcc7942_0267 0.50 +0.5 264,119 + gidB Synpcc7942_0267 0.50 -1.7 264,119 - gidB Synpcc7942_0267 0.50 -0.1 264,153 + gidB Synpcc7942_0267 0.54 +0.1 264,156 + gidB Synpcc7942_0267 0.55 +0.3 264,186 + gidB Synpcc7942_0267 0.59 +1.7 264,233 + gidB Synpcc7942_0267 0.65 +0.6 264,234 + gidB Synpcc7942_0267 0.65 -1.1 264,240 - gidB Synpcc7942_0267 0.66 +0.4 264,244 + gidB Synpcc7942_0267 0.67 +1.9 264,245 - gidB Synpcc7942_0267 0.67 +0.1 264,246 - gidB Synpcc7942_0267 0.67 +2.6 264,252 - gidB Synpcc7942_0267 0.68 +0.5 264,278 + gidB Synpcc7942_0267 0.71 +2.2 264,281 - gidB Synpcc7942_0267 0.72 +0.9 264,283 + gidB Synpcc7942_0267 0.72 +0.8 264,322 + gidB Synpcc7942_0267 0.78 +0.9 264,330 - gidB Synpcc7942_0267 0.79 -0.1 264,377 + gidB Synpcc7942_0267 0.85 +0.9 264,383 + gidB Synpcc7942_0267 0.86 +0.6 264,396 - gidB Synpcc7942_0267 0.88 -1.1 264,401 + gidB Synpcc7942_0267 0.88 +0.3 264,401 + gidB Synpcc7942_0267 0.88 -0.6 264,401 + gidB Synpcc7942_0267 0.88 +2.1 264,403 + gidB Synpcc7942_0267 0.89 +0.7 264,413 + -0.7 264,436 - -0.1 264,459 - +0.6 264,466 + +1.3 264,474 - +0.0 264,497 - +1.3 264,509 + +0.1 264,522 + -0.1 264,529 + +1.5 264,535 - Synpcc7942_0268 0.11 -0.4 264,544 + Synpcc7942_0268 0.13 +1.0 264,553 + Synpcc7942_0268 0.15 +0.8 264,553 + Synpcc7942_0268 0.15 -1.7 264,579 - Synpcc7942_0268 0.20 -0.1 264,595 - Synpcc7942_0268 0.23 +1.5 264,609 + Synpcc7942_0268 0.26 +0.8 264,609 + Synpcc7942_0268 0.26 +1.5 264,617 - Synpcc7942_0268 0.28 -0.1 264,617 - Synpcc7942_0268 0.28 +0.3 264,622 - Synpcc7942_0268 0.29 +2.2 264,624 + Synpcc7942_0268 0.29 -0.9 264,632 - Synpcc7942_0268 0.31 -1.1 264,652 + Synpcc7942_0268 0.35 -0.1 264,652 + Synpcc7942_0268 0.35 -1.1 264,660 - Synpcc7942_0268 0.37 -0.1 264,680 + Synpcc7942_0268 0.41 +1.1 264,695 + Synpcc7942_0268 0.44 -0.8 264,715 + Synpcc7942_0268 0.48 +1.4 264,762 - Synpcc7942_0268 0.58 +0.4 264,794 - Synpcc7942_0268 0.65 +0.5 264,813 + Synpcc7942_0268 0.69 +0.5 264,821 - Synpcc7942_0268 0.70 -0.8 264,835 + Synpcc7942_0268 0.73 -0.8 264,835 + Synpcc7942_0268 0.73 +0.5 264,839 - Synpcc7942_0268 0.74 +0.9 264,849 + Synpcc7942_0268 0.76 -0.5 264,857 - Synpcc7942_0268 0.78 +1.9 264,857 - Synpcc7942_0268 0.78 +0.4 264,859 + Synpcc7942_0268 0.78 +2.5 264,871 + Synpcc7942_0268 0.81 -1.7 264,872 + Synpcc7942_0268 0.81 +0.1 264,872 + Synpcc7942_0268 0.81 -1.1 264,872 + Synpcc7942_0268 0.81 -0.7 264,872 + Synpcc7942_0268 0.81 -1.1 264,872 + Synpcc7942_0268 0.81 -3.1 264,872 + Synpcc7942_0268 0.81 +2.5 264,872 + Synpcc7942_0268 0.81 +1.4 264,880 - Synpcc7942_0268 0.82 -0.1 264,880 - Synpcc7942_0268 0.82 +1.9 264,880 - Synpcc7942_0268 0.82 +0.5 264,880 - Synpcc7942_0268 0.82 +0.9 264,880 - Synpcc7942_0268 0.82 -1.1 264,880 - Synpcc7942_0268 0.82 -0.1 264,880 - Synpcc7942_0268 0.82 +3.1 264,880 - Synpcc7942_0268 0.82 -1.5 264,880 - Synpcc7942_0268 0.82 -0.2 264,883 + Synpcc7942_0268 0.83 +1.1 264,883 + Synpcc7942_0268 0.83 +1.1 264,883 + Synpcc7942_0268 0.83 -0.1 264,888 + Synpcc7942_0268 0.84 -0.1 264,891 - Synpcc7942_0268 0.85 +0.2 264,891 - Synpcc7942_0268 0.85 +1.5 264,891 - Synpcc7942_0268 0.85 -1.7 264,891 - Synpcc7942_0268 0.85 -2.1 264,893 + Synpcc7942_0268 0.85 +0.9 264,922 - +1.5 264,940 + +0.7 264,940 + +0.9 264,940 + +1.9 264,948 - +1.9 264,968 + -0.1 265,081 - Synpcc7942_0269 0.12 +2.5 265,103 + Synpcc7942_0269 0.14 +1.9 265,119 + Synpcc7942_0269 0.16 +1.2 265,148 - Synpcc7942_0269 0.20 +2.5 265,148 - Synpcc7942_0269 0.20 -0.1 265,175 - Synpcc7942_0269 0.23 +0.7 265,209 + Synpcc7942_0269 0.26 -0.5 265,218 + Synpcc7942_0269 0.27 -1.2 265,226 - Synpcc7942_0269 0.28 +0.2 265,231 + -0.1 265,280 + Synpcc7942_0269 0.34 +0.9 265,287 - Synpcc7942_0269 0.35 +0.1 265,322 + Synpcc7942_0269 0.39 +1.1 265,330 - Synpcc7942_0269 0.40 +1.7 265,330 - Synpcc7942_0269 0.40 -0.7 265,330 - Synpcc7942_0269 0.40 -0.6 265,330 - Synpcc7942_0269 0.40 +1.2 265,371 - Synpcc7942_0269 0.45 +0.7 265,377 - Synpcc7942_0269 0.45 -0.1 265,385 + Synpcc7942_0269 0.46 +3.1 265,395 + Synpcc7942_0269 0.48 -2.9 265,428 + Synpcc7942_0269 0.51 +1.9 265,436 - Synpcc7942_0269 0.52 +0.5 265,455 + Synpcc7942_0269 0.54 -1.1 265,463 - Synpcc7942_0269 0.55 +0.9 265,473 + Synpcc7942_0269 0.56 +0.9 265,478 - Synpcc7942_0269 0.57 -1.1 265,492 + Synpcc7942_0269 0.59 +0.1 265,492 + Synpcc7942_0269 0.59 +0.9 265,492 + Synpcc7942_0269 0.59 +0.7 265,500 - Synpcc7942_0269 0.59 +0.3 265,500 - Synpcc7942_0269 0.59 -0.6 265,521 - Synpcc7942_0269 0.62 -0.5 265,548 + Synpcc7942_0269 0.65 +0.1 265,559 - Synpcc7942_0269 0.66 +1.9 265,559 - Synpcc7942_0269 0.66 -1.4 265,559 - Synpcc7942_0269 0.66 -0.1 265,559 - Synpcc7942_0269 0.66 -1.1 265,593 + Synpcc7942_0269 0.70 +1.9 265,626 - Synpcc7942_0269 0.74 +2.9 265,626 - Synpcc7942_0269 0.74 -1.1 265,626 - Synpcc7942_0269 0.74 -1.1 265,626 - Synpcc7942_0269 0.74 +1.9 265,626 - Synpcc7942_0269 0.74 -1.1 265,626 - Synpcc7942_0269 0.74 -0.1 265,626 - Synpcc7942_0269 0.74 +3.2 265,649 + Synpcc7942_0269 0.76 +1.5 265,653 + Synpcc7942_0269 0.77 +0.9 265,654 + Synpcc7942_0269 0.77 -0.1 265,661 - Synpcc7942_0269 0.78 -1.4 265,661 - Synpcc7942_0269 0.78 +0.5 265,664 + Synpcc7942_0269 0.78 -1.1 265,664 + Synpcc7942_0269 0.78 +1.9 265,664 + Synpcc7942_0269 0.78 -0.1 265,741 + Synpcc7942_0269 0.87 +1.5 265,741 + Synpcc7942_0269 0.87 +0.7 265,741 + -0.1 265,749 - Synpcc7942_0269 0.88 +0.5 265,763 - Synpcc7942_0269 0.89 -0.1 265,805 - +1.5 265,815 - +0.9 265,853 + -0.1 265,869 + -0.1 265,875 - +0.6 265,877 - +1.7 265,911 + +2.9 265,911 + +2.7 265,911 + -0.8 265,919 - -0.4 265,924 - +1.5 265,936 - +0.4 265,945 + +0.6 265,948 - +0.4 265,948 - +0.3 265,959 - -0.1
Or see this region's nucleotide sequence