Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_835

Experiment: Chlorite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_834 and Pf1N1B4_835 are separated by 92 nucleotidesPf1N1B4_835 and Pf1N1B4_836 are separated by 117 nucleotides Pf1N1B4_834 - Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein), at 955,949 to 957,172 _834 Pf1N1B4_835 - Trehalose-6-phosphate hydrolase (EC 3.2.1.93), at 957,265 to 958,914 _835 Pf1N1B4_836 - PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69), at 959,032 to 960,474 _836 Position (kb) 957 958 959Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 956.313 kb on + strand, within Pf1N1B4_834at 956.417 kb on - strand, within Pf1N1B4_834at 956.419 kb on - strand, within Pf1N1B4_834at 956.464 kb on + strand, within Pf1N1B4_834at 956.465 kb on - strandat 956.465 kb on - strand, within Pf1N1B4_834at 956.465 kb on - strand, within Pf1N1B4_834at 956.465 kb on - strand, within Pf1N1B4_834at 956.554 kb on - strand, within Pf1N1B4_834at 956.554 kb on - strand, within Pf1N1B4_834at 956.554 kb on - strand, within Pf1N1B4_834at 956.554 kb on - strand, within Pf1N1B4_834at 956.554 kb on - strand, within Pf1N1B4_834at 956.628 kb on + strand, within Pf1N1B4_834at 956.628 kb on + strand, within Pf1N1B4_834at 956.628 kb on + strand, within Pf1N1B4_834at 956.628 kb on + strand, within Pf1N1B4_834at 956.628 kb on + strand, within Pf1N1B4_834at 956.628 kb on + strandat 956.629 kb on - strand, within Pf1N1B4_834at 956.629 kb on - strand, within Pf1N1B4_834at 956.629 kb on - strand, within Pf1N1B4_834at 956.629 kb on - strand, within Pf1N1B4_834at 956.667 kb on + strand, within Pf1N1B4_834at 956.667 kb on + strand, within Pf1N1B4_834at 956.667 kb on + strand, within Pf1N1B4_834at 956.667 kb on + strandat 956.668 kb on - strand, within Pf1N1B4_834at 956.668 kb on - strand, within Pf1N1B4_834at 956.668 kb on - strand, within Pf1N1B4_834at 956.673 kb on + strand, within Pf1N1B4_834at 956.673 kb on + strand, within Pf1N1B4_834at 956.673 kb on + strand, within Pf1N1B4_834at 956.674 kb on - strand, within Pf1N1B4_834at 956.733 kb on + strand, within Pf1N1B4_834at 956.736 kb on + strand, within Pf1N1B4_834at 956.737 kb on - strand, within Pf1N1B4_834at 956.737 kb on - strand, within Pf1N1B4_834at 956.737 kb on - strand, within Pf1N1B4_834at 956.737 kb on - strand, within Pf1N1B4_834at 956.737 kb on - strand, within Pf1N1B4_834at 956.737 kb on - strand, within Pf1N1B4_834at 956.769 kb on + strand, within Pf1N1B4_834at 956.769 kb on + strand, within Pf1N1B4_834at 956.770 kb on - strand, within Pf1N1B4_834at 956.770 kb on - strand, within Pf1N1B4_834at 956.770 kb on - strand, within Pf1N1B4_834at 956.832 kb on + strand, within Pf1N1B4_834at 956.832 kb on + strand, within Pf1N1B4_834at 956.832 kb on + strand, within Pf1N1B4_834at 956.832 kb on + strand, within Pf1N1B4_834at 956.832 kb on + strand, within Pf1N1B4_834at 956.833 kb on - strand, within Pf1N1B4_834at 956.833 kb on - strand, within Pf1N1B4_834at 956.833 kb on - strand, within Pf1N1B4_834at 956.833 kb on - strand, within Pf1N1B4_834at 956.833 kb on - strand, within Pf1N1B4_834at 956.833 kb on - strand, within Pf1N1B4_834at 956.890 kb on - strand, within Pf1N1B4_834at 956.890 kb on - strand, within Pf1N1B4_834at 956.898 kb on + strand, within Pf1N1B4_834at 956.898 kb on + strand, within Pf1N1B4_834at 956.898 kb on + strandat 956.898 kb on + strandat 956.898 kb on + strand, within Pf1N1B4_834at 956.898 kb on + strand, within Pf1N1B4_834at 956.899 kb on - strand, within Pf1N1B4_834at 956.979 kb on + strand, within Pf1N1B4_834at 956.980 kb on - strand, within Pf1N1B4_834at 956.980 kb on - strand, within Pf1N1B4_834at 956.980 kb on - strand, within Pf1N1B4_834at 956.980 kb on - strand, within Pf1N1B4_834at 956.980 kb on - strandat 957.084 kb on + strandat 957.085 kb on - strandat 957.159 kb on - strandat 957.159 kb on - strandat 957.191 kb on + strandat 957.299 kb on + strandat 957.422 kb on + strandat 957.499 kb on + strand, within Pf1N1B4_835at 957.972 kb on + strand, within Pf1N1B4_835at 958.274 kb on + strand, within Pf1N1B4_835at 958.274 kb on + strand, within Pf1N1B4_835at 958.460 kb on + strand, within Pf1N1B4_835at 958.461 kb on - strand, within Pf1N1B4_835at 958.463 kb on + strand, within Pf1N1B4_835at 958.463 kb on + strand, within Pf1N1B4_835at 958.544 kb on + strand, within Pf1N1B4_835at 958.544 kb on + strand, within Pf1N1B4_835at 958.545 kb on - strand, within Pf1N1B4_835at 958.806 kb on - strandat 958.886 kb on + strandat 958.886 kb on + strandat 958.886 kb on + strandat 958.887 kb on - strandat 958.931 kb on + strandat 958.941 kb on - strandat 959.203 kb on - strand, within Pf1N1B4_836at 959.252 kb on + strand, within Pf1N1B4_836at 959.253 kb on - strand, within Pf1N1B4_836at 959.253 kb on - strand, within Pf1N1B4_836at 959.253 kb on - strand, within Pf1N1B4_836at 959.253 kb on - strand, within Pf1N1B4_836at 959.268 kb on - strand, within Pf1N1B4_836at 959.312 kb on + strand, within Pf1N1B4_836at 959.312 kb on + strand, within Pf1N1B4_836at 959.312 kb on + strand, within Pf1N1B4_836at 959.369 kb on + strand, within Pf1N1B4_836at 959.369 kb on + strand, within Pf1N1B4_836at 959.369 kb on + strand, within Pf1N1B4_836at 959.369 kb on + strand, within Pf1N1B4_836at 959.369 kb on + strand, within Pf1N1B4_836at 959.369 kb on + strand, within Pf1N1B4_836at 959.369 kb on + strand, within Pf1N1B4_836at 959.369 kb on + strandat 959.370 kb on - strand, within Pf1N1B4_836at 959.370 kb on - strand, within Pf1N1B4_836at 959.370 kb on - strand, within Pf1N1B4_836at 959.370 kb on - strand, within Pf1N1B4_836at 959.370 kb on - strand, within Pf1N1B4_836at 959.370 kb on - strand, within Pf1N1B4_836at 959.370 kb on - strand, within Pf1N1B4_836at 959.370 kb on - strand, within Pf1N1B4_836at 959.370 kb on - strand, within Pf1N1B4_836at 959.431 kb on - strand, within Pf1N1B4_836at 959.514 kb on - strand, within Pf1N1B4_836at 959.729 kb on + strand, within Pf1N1B4_836at 959.729 kb on + strand, within Pf1N1B4_836at 959.730 kb on - strand, within Pf1N1B4_836at 959.850 kb on - strand, within Pf1N1B4_836

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 1 mM
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956,313 + Pf1N1B4_834 0.30 -1.8
956,417 - Pf1N1B4_834 0.38 -0.4
956,419 - Pf1N1B4_834 0.38 -1.4
956,464 + Pf1N1B4_834 0.42 +0.1
956,465 - +1.1
956,465 - Pf1N1B4_834 0.42 -0.1
956,465 - Pf1N1B4_834 0.42 +0.9
956,465 - Pf1N1B4_834 0.42 -0.3
956,554 - Pf1N1B4_834 0.49 -0.3
956,554 - Pf1N1B4_834 0.49 -0.3
956,554 - Pf1N1B4_834 0.49 +0.5
956,554 - Pf1N1B4_834 0.49 -0.5
956,554 - Pf1N1B4_834 0.49 -1.5
956,628 + Pf1N1B4_834 0.55 +0.4
956,628 + Pf1N1B4_834 0.55 -0.9
956,628 + Pf1N1B4_834 0.55 -1.3
956,628 + Pf1N1B4_834 0.55 +0.6
956,628 + Pf1N1B4_834 0.55 +1.5
956,628 + +1.1
956,629 - Pf1N1B4_834 0.56 -0.1
956,629 - Pf1N1B4_834 0.56 -0.5
956,629 - Pf1N1B4_834 0.56 -1.9
956,629 - Pf1N1B4_834 0.56 +1.1
956,667 + Pf1N1B4_834 0.59 -0.5
956,667 + Pf1N1B4_834 0.59 -0.1
956,667 + Pf1N1B4_834 0.59 +0.6
956,667 + -0.5
956,668 - Pf1N1B4_834 0.59 +0.1
956,668 - Pf1N1B4_834 0.59 +1.4
956,668 - Pf1N1B4_834 0.59 +1.1
956,673 + Pf1N1B4_834 0.59 -1.5
956,673 + Pf1N1B4_834 0.59 +2.1
956,673 + Pf1N1B4_834 0.59 -1.5
956,674 - Pf1N1B4_834 0.59 +2.1
956,733 + Pf1N1B4_834 0.64 +2.6
956,736 + Pf1N1B4_834 0.64 -0.9
956,737 - Pf1N1B4_834 0.64 +1.1
956,737 - Pf1N1B4_834 0.64 -0.9
956,737 - Pf1N1B4_834 0.64 +1.5
956,737 - Pf1N1B4_834 0.64 +0.2
956,737 - Pf1N1B4_834 0.64 +0.1
956,737 - Pf1N1B4_834 0.64 -0.4
956,769 + Pf1N1B4_834 0.67 +1.1
956,769 + Pf1N1B4_834 0.67 +1.1
956,770 - Pf1N1B4_834 0.67 -0.5
956,770 - Pf1N1B4_834 0.67 +0.1
956,770 - Pf1N1B4_834 0.67 -1.4
956,832 + Pf1N1B4_834 0.72 -0.6
956,832 + Pf1N1B4_834 0.72 +0.2
956,832 + Pf1N1B4_834 0.72 +0.1
956,832 + Pf1N1B4_834 0.72 +1.1
956,832 + Pf1N1B4_834 0.72 +0.3
956,833 - Pf1N1B4_834 0.72 +0.3
956,833 - Pf1N1B4_834 0.72 +2.1
956,833 - Pf1N1B4_834 0.72 +1.1
956,833 - Pf1N1B4_834 0.72 -1.3
956,833 - Pf1N1B4_834 0.72 +0.1
956,833 - Pf1N1B4_834 0.72 +1.4
956,890 - Pf1N1B4_834 0.77 +1.1
956,890 - Pf1N1B4_834 0.77 +1.1
956,898 + Pf1N1B4_834 0.78 -1.2
956,898 + Pf1N1B4_834 0.78 +0.5
956,898 + +1.1
956,898 + +0.1
956,898 + Pf1N1B4_834 0.78 +0.1
956,898 + Pf1N1B4_834 0.78 -0.2
956,899 - Pf1N1B4_834 0.78 +0.3
956,979 + Pf1N1B4_834 0.84 -0.5
956,980 - Pf1N1B4_834 0.84 -0.5
956,980 - Pf1N1B4_834 0.84 +0.4
956,980 - Pf1N1B4_834 0.84 +0.4
956,980 - Pf1N1B4_834 0.84 +1.1
956,980 - -1.3
957,084 + +0.3
957,085 - +0.6
957,159 - -0.1
957,159 - +1.1
957,191 + -1.3
957,299 + -1.5
957,422 + +1.2
957,499 + Pf1N1B4_835 0.14 -0.5
957,972 + Pf1N1B4_835 0.43 +0.1
958,274 + Pf1N1B4_835 0.61 -1.8
958,274 + Pf1N1B4_835 0.61 +0.1
958,460 + Pf1N1B4_835 0.72 -1.9
958,461 - Pf1N1B4_835 0.72 -2.3
958,463 + Pf1N1B4_835 0.73 -1.1
958,463 + Pf1N1B4_835 0.73 -1.3
958,544 + Pf1N1B4_835 0.78 +1.4
958,544 + Pf1N1B4_835 0.78 +2.1
958,545 - Pf1N1B4_835 0.78 +0.6
958,806 - -0.8
958,886 + -0.9
958,886 + -1.5
958,886 + +0.8
958,887 - -1.5
958,931 + -1.4
958,941 - +0.5
959,203 - Pf1N1B4_836 0.12 -0.8
959,252 + Pf1N1B4_836 0.15 +0.2
959,253 - Pf1N1B4_836 0.15 -0.3
959,253 - Pf1N1B4_836 0.15 -0.8
959,253 - Pf1N1B4_836 0.15 -1.3
959,253 - Pf1N1B4_836 0.15 +0.7
959,268 - Pf1N1B4_836 0.16 -0.1
959,312 + Pf1N1B4_836 0.19 +1.1
959,312 + Pf1N1B4_836 0.19 -0.4
959,312 + Pf1N1B4_836 0.19 -0.7
959,369 + Pf1N1B4_836 0.23 -0.3
959,369 + Pf1N1B4_836 0.23 -0.5
959,369 + Pf1N1B4_836 0.23 -2.8
959,369 + Pf1N1B4_836 0.23 +0.1
959,369 + Pf1N1B4_836 0.23 -1.5
959,369 + Pf1N1B4_836 0.23 +0.1
959,369 + Pf1N1B4_836 0.23 +0.1
959,369 + +0.5
959,370 - Pf1N1B4_836 0.23 +0.1
959,370 - Pf1N1B4_836 0.23 +1.1
959,370 - Pf1N1B4_836 0.23 -0.2
959,370 - Pf1N1B4_836 0.23 -0.9
959,370 - Pf1N1B4_836 0.23 -0.1
959,370 - Pf1N1B4_836 0.23 +0.2
959,370 - Pf1N1B4_836 0.23 -0.5
959,370 - Pf1N1B4_836 0.23 -0.3
959,370 - Pf1N1B4_836 0.23 +1.1
959,431 - Pf1N1B4_836 0.28 +0.3
959,514 - Pf1N1B4_836 0.33 -0.3
959,729 + Pf1N1B4_836 0.48 +0.1
959,729 + Pf1N1B4_836 0.48 -0.8
959,730 - Pf1N1B4_836 0.48 +0.5
959,850 - Pf1N1B4_836 0.57 +0.4

Or see this region's nucleotide sequence