Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_817

Experiment: Chlorite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_815 and Pf1N1B4_816 are separated by 161 nucleotidesPf1N1B4_816 and Pf1N1B4_817 are separated by 41 nucleotidesPf1N1B4_817 and Pf1N1B4_818 are separated by 161 nucleotides Pf1N1B4_815 - iron-chelator utilization protein, at 932,869 to 933,666 _815 Pf1N1B4_816 - Integral membrane protein, at 933,828 to 934,433 _816 Pf1N1B4_817 - FIG00955104: hypothetical protein, at 934,475 to 934,705 _817 Pf1N1B4_818 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 934,867 to 936,255 _818 Position (kb) 934 935Strain fitness (log2 ratio) -2 -1 0 1 2at 933.535 kb on + strand, within Pf1N1B4_815at 933.535 kb on + strand, within Pf1N1B4_815at 933.536 kb on - strand, within Pf1N1B4_815at 933.584 kb on + strand, within Pf1N1B4_815at 933.664 kb on + strandat 933.694 kb on - strandat 933.958 kb on + strand, within Pf1N1B4_816at 934.006 kb on + strand, within Pf1N1B4_816at 934.007 kb on - strand, within Pf1N1B4_816at 934.007 kb on - strand, within Pf1N1B4_816at 934.007 kb on - strandat 934.007 kb on - strand, within Pf1N1B4_816at 934.018 kb on + strand, within Pf1N1B4_816at 934.019 kb on - strand, within Pf1N1B4_816at 934.019 kb on - strand, within Pf1N1B4_816at 934.019 kb on - strand, within Pf1N1B4_816at 934.055 kb on + strand, within Pf1N1B4_816at 934.056 kb on - strand, within Pf1N1B4_816at 934.082 kb on - strand, within Pf1N1B4_816at 934.177 kb on + strand, within Pf1N1B4_816at 934.178 kb on - strand, within Pf1N1B4_816at 934.375 kb on - strandat 934.375 kb on - strandat 934.375 kb on - strandat 934.375 kb on - strandat 934.379 kb on - strandat 934.379 kb on - strandat 934.379 kb on - strandat 934.390 kb on + strandat 934.390 kb on + strandat 934.391 kb on - strandat 934.391 kb on - strandat 934.509 kb on + strand, within Pf1N1B4_817at 934.510 kb on - strand, within Pf1N1B4_817at 934.573 kb on + strand, within Pf1N1B4_817at 934.574 kb on - strandat 934.632 kb on + strand, within Pf1N1B4_817at 934.632 kb on + strand, within Pf1N1B4_817at 934.632 kb on + strand, within Pf1N1B4_817at 934.633 kb on - strand, within Pf1N1B4_817at 934.808 kb on + strandat 934.808 kb on + strandat 934.808 kb on + strandat 934.809 kb on - strandat 934.814 kb on + strandat 934.855 kb on + strandat 934.855 kb on + strandat 934.855 kb on + strandat 934.871 kb on + strandat 934.986 kb on + strandat 934.987 kb on - strandat 935.097 kb on - strand, within Pf1N1B4_818at 935.097 kb on - strand, within Pf1N1B4_818at 935.097 kb on - strand, within Pf1N1B4_818at 935.103 kb on - strandat 935.103 kb on - strand, within Pf1N1B4_818at 935.182 kb on - strand, within Pf1N1B4_818at 935.220 kb on + strand, within Pf1N1B4_818at 935.220 kb on + strand, within Pf1N1B4_818at 935.309 kb on + strand, within Pf1N1B4_818at 935.309 kb on + strand, within Pf1N1B4_818at 935.310 kb on - strand, within Pf1N1B4_818at 935.310 kb on - strand, within Pf1N1B4_818at 935.364 kb on - strand, within Pf1N1B4_818at 935.429 kb on + strand, within Pf1N1B4_818at 935.429 kb on + strandat 935.430 kb on - strand, within Pf1N1B4_818at 935.430 kb on - strand, within Pf1N1B4_818at 935.430 kb on - strand, within Pf1N1B4_818

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 1 mM
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933,535 + Pf1N1B4_815 0.83 +2.0
933,535 + Pf1N1B4_815 0.83 +0.3
933,536 - Pf1N1B4_815 0.84 -1.0
933,584 + Pf1N1B4_815 0.90 -0.5
933,664 + -0.4
933,694 - +0.2
933,958 + Pf1N1B4_816 0.21 -0.7
934,006 + Pf1N1B4_816 0.29 -1.8
934,007 - Pf1N1B4_816 0.30 +0.2
934,007 - Pf1N1B4_816 0.30 +0.0
934,007 - +0.5
934,007 - Pf1N1B4_816 0.30 -0.3
934,018 + Pf1N1B4_816 0.31 -0.6
934,019 - Pf1N1B4_816 0.32 -1.3
934,019 - Pf1N1B4_816 0.32 -0.5
934,019 - Pf1N1B4_816 0.32 +0.6
934,055 + Pf1N1B4_816 0.37 -0.1
934,056 - Pf1N1B4_816 0.38 -0.3
934,082 - Pf1N1B4_816 0.42 -1.8
934,177 + Pf1N1B4_816 0.58 +0.3
934,178 - Pf1N1B4_816 0.58 -1.8
934,375 - +1.8
934,375 - +0.6
934,375 - +0.2
934,375 - -1.5
934,379 - +0.5
934,379 - +0.9
934,379 - -1.0
934,390 + +0.2
934,390 + -0.5
934,391 - -0.1
934,391 - -1.4
934,509 + Pf1N1B4_817 0.15 +1.4
934,510 - Pf1N1B4_817 0.15 -1.3
934,573 + Pf1N1B4_817 0.42 -0.4
934,574 - -1.0
934,632 + Pf1N1B4_817 0.68 +0.2
934,632 + Pf1N1B4_817 0.68 +0.7
934,632 + Pf1N1B4_817 0.68 +1.0
934,633 - Pf1N1B4_817 0.68 +0.8
934,808 + +2.0
934,808 + +0.0
934,808 + -0.3
934,809 - +0.0
934,814 + +0.2
934,855 + +0.0
934,855 + -0.5
934,855 + +0.0
934,871 + +0.6
934,986 + +0.0
934,987 - -0.5
935,097 - Pf1N1B4_818 0.17 +0.2
935,097 - Pf1N1B4_818 0.17 -0.4
935,097 - Pf1N1B4_818 0.17 +0.5
935,103 - +0.6
935,103 - Pf1N1B4_818 0.17 +0.2
935,182 - Pf1N1B4_818 0.23 -2.0
935,220 + Pf1N1B4_818 0.25 -1.8
935,220 + Pf1N1B4_818 0.25 -1.8
935,309 + Pf1N1B4_818 0.32 -1.5
935,309 + Pf1N1B4_818 0.32 +0.6
935,310 - Pf1N1B4_818 0.32 +0.7
935,310 - Pf1N1B4_818 0.32 -1.7
935,364 - Pf1N1B4_818 0.36 -1.0
935,429 + Pf1N1B4_818 0.40 -0.5
935,429 + -0.5
935,430 - Pf1N1B4_818 0.41 -0.5
935,430 - Pf1N1B4_818 0.41 -0.7
935,430 - Pf1N1B4_818 0.41 -2.0

Or see this region's nucleotide sequence