Experiment: Chlorite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_714 and Pf1N1B4_715 are separated by 323 nucleotides Pf1N1B4_715 and Pf1N1B4_716 are separated by 261 nucleotides
Pf1N1B4_714 - GGDEF domain/EAL domain protein, at 812,271 to 814,319
_714
Pf1N1B4_715 - Iron-regulated protein A precursor, at 814,643 to 815,986
_715
Pf1N1B4_716 - Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites, at 816,248 to 817,675
_716
Position (kb) 814
815
816 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 813.832 kb on + strand, within Pf1N1B4_714 at 813.833 kb on - strand, within Pf1N1B4_714 at 813.833 kb on - strand, within Pf1N1B4_714 at 813.879 kb on + strand, within Pf1N1B4_714 at 813.879 kb on + strand, within Pf1N1B4_714 at 813.879 kb on + strand, within Pf1N1B4_714 at 813.879 kb on + strand, within Pf1N1B4_714 at 813.880 kb on - strand, within Pf1N1B4_714 at 813.880 kb on - strand, within Pf1N1B4_714 at 814.032 kb on + strand, within Pf1N1B4_714 at 814.033 kb on - strand, within Pf1N1B4_714 at 814.200 kb on + strand at 814.200 kb on + strand at 814.200 kb on + strand at 814.200 kb on + strand at 814.200 kb on + strand at 814.200 kb on + strand at 814.200 kb on + strand at 814.200 kb on + strand at 814.201 kb on - strand at 814.201 kb on - strand at 814.201 kb on - strand at 814.201 kb on - strand at 814.201 kb on - strand at 814.201 kb on - strand at 814.201 kb on - strand at 814.201 kb on - strand at 814.236 kb on + strand at 814.242 kb on + strand at 814.243 kb on - strand at 814.243 kb on - strand at 814.243 kb on - strand at 814.243 kb on - strand at 814.279 kb on - strand at 814.334 kb on + strand at 814.334 kb on + strand at 814.334 kb on + strand at 814.335 kb on - strand at 814.409 kb on - strand at 814.497 kb on + strand at 814.498 kb on - strand at 814.498 kb on - strand at 814.498 kb on - strand at 814.498 kb on - strand at 814.651 kb on + strand at 814.652 kb on - strand at 814.652 kb on - strand at 814.687 kb on + strand at 814.687 kb on + strand at 814.857 kb on - strand, within Pf1N1B4_715 at 814.977 kb on - strand at 815.071 kb on + strand, within Pf1N1B4_715 at 815.073 kb on - strand, within Pf1N1B4_715 at 815.087 kb on + strand, within Pf1N1B4_715 at 815.087 kb on + strand, within Pf1N1B4_715 at 815.088 kb on - strand, within Pf1N1B4_715 at 815.088 kb on - strand at 815.140 kb on + strand at 815.140 kb on + strand, within Pf1N1B4_715 at 815.378 kb on + strand, within Pf1N1B4_715 at 815.379 kb on - strand, within Pf1N1B4_715 at 815.431 kb on + strand, within Pf1N1B4_715 at 815.460 kb on - strand at 815.460 kb on - strand, within Pf1N1B4_715 at 815.637 kb on - strand, within Pf1N1B4_715 at 815.656 kb on + strand, within Pf1N1B4_715 at 815.663 kb on + strand, within Pf1N1B4_715 at 815.664 kb on - strand, within Pf1N1B4_715 at 815.675 kb on + strand, within Pf1N1B4_715 at 815.676 kb on - strand, within Pf1N1B4_715 at 815.831 kb on + strand, within Pf1N1B4_715 at 816.006 kb on + strand at 816.007 kb on - strand at 816.207 kb on - strand at 816.645 kb on - strand, within Pf1N1B4_716 at 816.740 kb on - strand, within Pf1N1B4_716
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 1 mM remove 813,832 + Pf1N1B4_714 0.76 +0.2 813,833 - Pf1N1B4_714 0.76 -0.2 813,833 - Pf1N1B4_714 0.76 -1.8 813,879 + Pf1N1B4_714 0.78 -1.3 813,879 + Pf1N1B4_714 0.78 +2.6 813,879 + Pf1N1B4_714 0.78 -0.3 813,879 + Pf1N1B4_714 0.78 -0.6 813,880 - Pf1N1B4_714 0.79 +0.4 813,880 - Pf1N1B4_714 0.79 -0.6 814,032 + Pf1N1B4_714 0.86 +1.0 814,033 - Pf1N1B4_714 0.86 +0.2 814,200 + +0.0 814,200 + +0.0 814,200 + -1.6 814,200 + -0.9 814,200 + +0.2 814,200 + +1.6 814,200 + -0.3 814,200 + -0.2 814,201 - -0.6 814,201 - +0.2 814,201 - +0.5 814,201 - -1.0 814,201 - -1.9 814,201 - +0.4 814,201 - +1.0 814,201 - +0.8 814,236 + -0.5 814,242 + -0.4 814,243 - +0.6 814,243 - +0.0 814,243 - +0.1 814,243 - -0.8 814,279 - +0.2 814,334 + -0.6 814,334 + -0.3 814,334 + +1.0 814,335 - -0.3 814,409 - +1.3 814,497 + +0.6 814,498 - -0.4 814,498 - -1.2 814,498 - -1.2 814,498 - -0.3 814,651 + -2.5 814,652 - -0.3 814,652 - -2.2 814,687 + -1.8 814,687 + -1.5 814,857 - Pf1N1B4_715 0.16 -1.3 814,977 - +1.0 815,071 + Pf1N1B4_715 0.32 -0.8 815,073 - Pf1N1B4_715 0.32 -0.8 815,087 + Pf1N1B4_715 0.33 -0.6 815,087 + Pf1N1B4_715 0.33 -2.2 815,088 - Pf1N1B4_715 0.33 -1.8 815,088 - -0.0 815,140 + -1.6 815,140 + Pf1N1B4_715 0.37 -1.4 815,378 + Pf1N1B4_715 0.55 -2.2 815,379 - Pf1N1B4_715 0.55 -2.1 815,431 + Pf1N1B4_715 0.59 +2.0 815,460 - -1.3 815,460 - Pf1N1B4_715 0.61 -1.3 815,637 - Pf1N1B4_715 0.74 -2.2 815,656 + Pf1N1B4_715 0.75 -2.7 815,663 + Pf1N1B4_715 0.76 -1.8 815,664 - Pf1N1B4_715 0.76 -1.6 815,675 + Pf1N1B4_715 0.77 -1.0 815,676 - Pf1N1B4_715 0.77 -1.7 815,831 + Pf1N1B4_715 0.88 -3.0 816,006 + +0.2 816,007 - -0.0 816,207 - +1.0 816,645 - Pf1N1B4_716 0.28 -1.2 816,740 - Pf1N1B4_716 0.34 -1.0
Or see this region's nucleotide sequence