Experiment: Chlorite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_686 and Pf1N1B4_687 are separated by 241 nucleotides Pf1N1B4_687 and Pf1N1B4_688 are separated by 0 nucleotides Pf1N1B4_688 and Pf1N1B4_689 are separated by 41 nucleotides Pf1N1B4_689 and Pf1N1B4_690 are separated by 427 nucleotides
Pf1N1B4_686 - Dicarboxylate MFS transporter, at 784,892 to 786,211
_686
Pf1N1B4_687 - Nitrilotriacetate monooxygenase component B (EC 1.14.13.-), at 786,453 to 787,082
_687
Pf1N1B4_688 - FIG00955483: hypothetical protein, at 787,083 to 787,313
_688
Pf1N1B4_689 - FIG00954888: hypothetical protein, at 787,355 to 787,708
_689
Pf1N1B4_690 - Transcriptional regulator, AraC family, at 788,136 to 789,065
_690
Position (kb) 787
788 Strain fitness (log2 ratio) -2
-1
0
1
2 at 786.116 kb on + strand at 786.119 kb on + strand at 786.119 kb on + strand at 786.119 kb on + strand at 786.119 kb on + strand at 786.120 kb on - strand at 786.120 kb on - strand at 786.125 kb on + strand at 786.125 kb on + strand at 786.126 kb on - strand at 786.126 kb on - strand at 786.126 kb on - strand at 786.161 kb on + strand at 786.161 kb on + strand at 786.161 kb on + strand at 786.161 kb on + strand at 786.161 kb on + strand at 786.161 kb on + strand at 786.161 kb on + strand at 786.161 kb on + strand at 786.161 kb on + strand at 786.162 kb on - strand at 786.227 kb on - strand at 786.264 kb on + strand at 786.265 kb on - strand at 786.265 kb on - strand at 786.265 kb on - strand at 786.317 kb on - strand at 786.341 kb on + strand at 786.342 kb on - strand at 786.396 kb on + strand at 786.397 kb on - strand at 786.452 kb on + strand at 786.452 kb on + strand at 786.453 kb on - strand at 786.453 kb on - strand at 786.474 kb on + strand at 786.474 kb on + strand at 786.474 kb on + strand at 786.475 kb on - strand at 786.475 kb on - strand at 786.593 kb on + strand at 786.593 kb on + strand, within Pf1N1B4_687 at 786.593 kb on + strand, within Pf1N1B4_687 at 786.594 kb on - strand, within Pf1N1B4_687 at 786.594 kb on - strand, within Pf1N1B4_687 at 786.594 kb on - strand, within Pf1N1B4_687 at 786.594 kb on - strand, within Pf1N1B4_687 at 786.594 kb on - strand, within Pf1N1B4_687 at 786.594 kb on - strand, within Pf1N1B4_687 at 786.594 kb on - strand, within Pf1N1B4_687 at 786.594 kb on - strand, within Pf1N1B4_687 at 786.615 kb on + strand, within Pf1N1B4_687 at 786.616 kb on - strand, within Pf1N1B4_687 at 786.616 kb on - strand, within Pf1N1B4_687 at 786.616 kb on - strand, within Pf1N1B4_687 at 786.972 kb on + strand, within Pf1N1B4_687 at 786.972 kb on + strand, within Pf1N1B4_687 at 786.973 kb on - strand, within Pf1N1B4_687 at 787.080 kb on + strand at 787.080 kb on + strand at 787.080 kb on + strand at 787.081 kb on - strand at 787.081 kb on - strand at 787.081 kb on - strand at 787.081 kb on - strand at 787.081 kb on - strand at 787.081 kb on - strand at 787.081 kb on - strand at 787.084 kb on + strand at 787.084 kb on + strand at 787.085 kb on - strand at 787.269 kb on + strand, within Pf1N1B4_688 at 787.269 kb on + strand, within Pf1N1B4_688 at 787.269 kb on + strand, within Pf1N1B4_688 at 787.269 kb on + strand, within Pf1N1B4_688 at 787.269 kb on + strand, within Pf1N1B4_688 at 787.373 kb on + strand at 787.374 kb on - strand at 787.500 kb on + strand, within Pf1N1B4_689 at 787.500 kb on + strand, within Pf1N1B4_689 at 787.500 kb on + strand, within Pf1N1B4_689 at 787.501 kb on - strand, within Pf1N1B4_689 at 787.681 kb on + strand at 787.682 kb on - strand at 787.682 kb on - strand at 787.702 kb on + strand at 787.703 kb on - strand at 787.870 kb on + strand at 787.870 kb on + strand at 788.095 kb on - strand at 788.220 kb on - strand at 788.241 kb on + strand, within Pf1N1B4_690 at 788.241 kb on + strand, within Pf1N1B4_690 at 788.242 kb on - strand at 788.242 kb on - strand, within Pf1N1B4_690 at 788.242 kb on - strand, within Pf1N1B4_690 at 788.242 kb on - strand, within Pf1N1B4_690 at 788.242 kb on - strand, within Pf1N1B4_690
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 1 mM remove 786,116 + +0.2 786,119 + +0.1 786,119 + -1.4 786,119 + -1.2 786,119 + +0.1 786,120 - +1.0 786,120 - +0.4 786,125 + -1.4 786,125 + -0.4 786,126 - -0.6 786,126 - -0.3 786,126 - -1.4 786,161 + -1.8 786,161 + -0.9 786,161 + +0.7 786,161 + -2.4 786,161 + +0.2 786,161 + +1.0 786,161 + -0.0 786,161 + +0.2 786,161 + +0.5 786,162 - +0.2 786,227 - -0.0 786,264 + -0.8 786,265 - -1.2 786,265 - +0.1 786,265 - -0.0 786,317 - -2.4 786,341 + -0.6 786,342 - -0.3 786,396 + -2.0 786,397 - -0.0 786,452 + -0.2 786,452 + -1.4 786,453 - +2.5 786,453 - -0.1 786,474 + +0.4 786,474 + +1.2 786,474 + -0.6 786,475 - +1.0 786,475 - -0.4 786,593 + -1.8 786,593 + Pf1N1B4_687 0.22 +0.1 786,593 + Pf1N1B4_687 0.22 +1.0 786,594 - Pf1N1B4_687 0.22 -0.4 786,594 - Pf1N1B4_687 0.22 +0.2 786,594 - Pf1N1B4_687 0.22 +0.2 786,594 - Pf1N1B4_687 0.22 +0.2 786,594 - Pf1N1B4_687 0.22 -0.0 786,594 - Pf1N1B4_687 0.22 -1.0 786,594 - Pf1N1B4_687 0.22 +1.0 786,594 - Pf1N1B4_687 0.22 +0.2 786,615 + Pf1N1B4_687 0.26 +0.5 786,616 - Pf1N1B4_687 0.26 +1.3 786,616 - Pf1N1B4_687 0.26 -0.3 786,616 - Pf1N1B4_687 0.26 -0.9 786,972 + Pf1N1B4_687 0.82 -0.5 786,972 + Pf1N1B4_687 0.82 -0.1 786,973 - Pf1N1B4_687 0.83 -0.6 787,080 + -0.2 787,080 + -0.9 787,080 + -0.5 787,081 - +0.2 787,081 - -0.0 787,081 - -1.0 787,081 - -0.4 787,081 - -0.1 787,081 - -1.2 787,081 - -1.4 787,084 + +1.2 787,084 + -0.6 787,085 - -0.7 787,269 + Pf1N1B4_688 0.81 -1.2 787,269 + Pf1N1B4_688 0.81 -0.0 787,269 + Pf1N1B4_688 0.81 -0.6 787,269 + Pf1N1B4_688 0.81 -0.2 787,269 + Pf1N1B4_688 0.81 -0.8 787,373 + +0.2 787,374 - +2.0 787,500 + Pf1N1B4_689 0.41 +0.4 787,500 + Pf1N1B4_689 0.41 +1.0 787,500 + Pf1N1B4_689 0.41 -0.3 787,501 - Pf1N1B4_689 0.41 -0.5 787,681 + -0.8 787,682 - -1.1 787,682 - -0.7 787,702 + -0.0 787,703 - -0.0 787,870 + +0.4 787,870 + +1.0 788,095 - -0.3 788,220 - -1.0 788,241 + Pf1N1B4_690 0.11 -0.4 788,241 + Pf1N1B4_690 0.11 -0.3 788,242 - -1.4 788,242 - Pf1N1B4_690 0.11 -0.3 788,242 - Pf1N1B4_690 0.11 -0.8 788,242 - Pf1N1B4_690 0.11 -0.0 788,242 - Pf1N1B4_690 0.11 +0.5
Or see this region's nucleotide sequence