Experiment: Chlorite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_61 and Pf1N1B4_62 are separated by 71 nucleotides Pf1N1B4_62 and Pf1N1B4_63 are separated by 200 nucleotides Pf1N1B4_63 and Pf1N1B4_64 are separated by 109 nucleotides Pf1N1B4_64 and Pf1N1B4_65 are separated by 194 nucleotides
Pf1N1B4_61 - FIG00953170: hypothetical protein, at 65,476 to 65,775
_61
Pf1N1B4_62 - VacJ-like lipoprotein precursor, at 65,847 to 66,536
_62
Pf1N1B4_63 - Phosphonoacetaldehyde phosphonohydrolase-related protein, at 66,737 to 67,357
_63
Pf1N1B4_64 - Chromosome segregation ATPases, at 67,467 to 67,730
_64
Pf1N1B4_65 - NADPH dependent preQ0 reductase (EC 1.7.1.13), at 67,925 to 68,755
_65
Position (kb) 66
67
68 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 65.754 kb on + strand at 65.755 kb on - strand at 65.755 kb on - strand at 65.755 kb on - strand at 65.755 kb on - strand at 65.755 kb on - strand at 65.773 kb on + strand at 66.598 kb on - strand at 66.598 kb on - strand at 66.598 kb on - strand at 66.598 kb on - strand at 66.598 kb on - strand at 66.598 kb on - strand at 66.600 kb on - strand at 66.600 kb on - strand at 66.619 kb on - strand at 66.707 kb on + strand at 66.716 kb on + strand at 66.717 kb on - strand at 66.717 kb on - strand at 66.717 kb on - strand at 66.717 kb on - strand at 66.719 kb on + strand at 66.720 kb on - strand at 66.720 kb on - strand at 66.720 kb on - strand at 66.720 kb on - strand at 66.720 kb on - strand at 66.737 kb on - strand at 66.786 kb on + strand at 66.786 kb on + strand at 66.787 kb on - strand at 66.830 kb on - strand, within Pf1N1B4_63 at 66.830 kb on - strand, within Pf1N1B4_63 at 66.830 kb on - strand, within Pf1N1B4_63 at 66.991 kb on + strand at 66.992 kb on - strand at 66.992 kb on - strand, within Pf1N1B4_63 at 67.322 kb on - strand at 67.390 kb on - strand at 67.394 kb on + strand at 67.394 kb on + strand at 67.395 kb on - strand at 67.395 kb on - strand at 67.408 kb on - strand at 67.408 kb on - strand at 67.433 kb on + strand at 67.434 kb on - strand at 67.451 kb on + strand at 67.741 kb on + strand at 67.741 kb on + strand at 67.838 kb on + strand at 67.838 kb on + strand at 67.839 kb on - strand at 67.839 kb on - strand at 67.923 kb on + strand at 67.923 kb on + strand at 67.923 kb on + strand at 67.924 kb on - strand at 67.924 kb on - strand at 67.924 kb on - strand at 67.924 kb on - strand at 67.924 kb on - strand at 67.924 kb on - strand at 67.924 kb on - strand at 67.924 kb on - strand at 67.927 kb on - strand at 67.927 kb on - strand at 68.011 kb on - strand, within Pf1N1B4_65 at 68.011 kb on - strand, within Pf1N1B4_65 at 68.019 kb on + strand, within Pf1N1B4_65 at 68.019 kb on + strand, within Pf1N1B4_65 at 68.019 kb on + strand, within Pf1N1B4_65 at 68.020 kb on - strand, within Pf1N1B4_65 at 68.020 kb on - strand, within Pf1N1B4_65 at 68.020 kb on - strand, within Pf1N1B4_65 at 68.020 kb on - strand, within Pf1N1B4_65 at 68.122 kb on - strand, within Pf1N1B4_65 at 68.122 kb on - strand, within Pf1N1B4_65 at 68.232 kb on - strand, within Pf1N1B4_65 at 68.245 kb on + strand, within Pf1N1B4_65 at 68.246 kb on - strand at 68.292 kb on + strand, within Pf1N1B4_65 at 68.293 kb on - strand, within Pf1N1B4_65 at 68.293 kb on - strand, within Pf1N1B4_65 at 68.293 kb on - strand, within Pf1N1B4_65 at 68.293 kb on - strand, within Pf1N1B4_65 at 68.293 kb on - strand, within Pf1N1B4_65 at 68.293 kb on - strand, within Pf1N1B4_65
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 1 mM remove 65,754 + +0.2 65,755 - -0.3 65,755 - +0.6 65,755 - -3.5 65,755 - -0.4 65,755 - +2.0 65,773 + -1.8 66,598 - -1.4 66,598 - -0.7 66,598 - +0.2 66,598 - -0.4 66,598 - +1.6 66,598 - -1.2 66,600 - +0.2 66,600 - +0.2 66,619 - -0.2 66,707 + +0.6 66,716 + +1.0 66,717 - +0.2 66,717 - +0.5 66,717 - -0.8 66,717 - -2.0 66,719 + -0.6 66,720 - +0.4 66,720 - -1.7 66,720 - +0.2 66,720 - -0.8 66,720 - -0.5 66,737 - -0.6 66,786 + +0.0 66,786 + +0.8 66,787 - +2.4 66,830 - Pf1N1B4_63 0.15 -0.7 66,830 - Pf1N1B4_63 0.15 +0.7 66,830 - Pf1N1B4_63 0.15 +1.4 66,991 + +0.8 66,992 - -0.8 66,992 - Pf1N1B4_63 0.41 +0.1 67,322 - -2.2 67,390 - -0.2 67,394 + +1.2 67,394 + -0.2 67,395 - +1.8 67,395 - -1.2 67,408 - -0.2 67,408 - -0.0 67,433 + +2.6 67,434 - -0.1 67,451 + -1.0 67,741 + -0.4 67,741 + +0.6 67,838 + +1.1 67,838 + -0.3 67,839 - +0.5 67,839 - -0.1 67,923 + -1.1 67,923 + -1.6 67,923 + +0.8 67,924 - -0.5 67,924 - -0.7 67,924 - -1.6 67,924 - +0.2 67,924 - +0.8 67,924 - -0.8 67,924 - -0.8 67,924 - -0.2 67,927 - +1.1 67,927 - -0.3 68,011 - Pf1N1B4_65 0.10 -1.0 68,011 - Pf1N1B4_65 0.10 -0.6 68,019 + Pf1N1B4_65 0.11 -1.8 68,019 + Pf1N1B4_65 0.11 -0.6 68,019 + Pf1N1B4_65 0.11 -1.2 68,020 - Pf1N1B4_65 0.11 -1.6 68,020 - Pf1N1B4_65 0.11 -1.3 68,020 - Pf1N1B4_65 0.11 -1.8 68,020 - Pf1N1B4_65 0.11 -1.2 68,122 - Pf1N1B4_65 0.24 -1.2 68,122 - Pf1N1B4_65 0.24 -2.4 68,232 - Pf1N1B4_65 0.37 -2.7 68,245 + Pf1N1B4_65 0.39 +0.8 68,246 - -0.8 68,292 + Pf1N1B4_65 0.44 -1.8 68,293 - Pf1N1B4_65 0.44 +0.2 68,293 - Pf1N1B4_65 0.44 -0.8 68,293 - Pf1N1B4_65 0.44 -0.8 68,293 - Pf1N1B4_65 0.44 -1.8 68,293 - Pf1N1B4_65 0.44 +0.2 68,293 - Pf1N1B4_65 0.44 -1.6
Or see this region's nucleotide sequence