Experiment: Chlorite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_6012 and Pf1N1B4_6013 overlap by 4 nucleotides Pf1N1B4_6013 and Pf1N1B4_6014 overlap by 4 nucleotides
Pf1N1B4_6012 - COG0419: ATPase involved in DNA repair, at 472,823 to 475,912
_6012
Pf1N1B4_6013 - hypothetical protein, at 475,909 to 476,808
_6013
Pf1N1B4_6014 - ATP-dependent DNA helicase RecQ, at 476,805 to 479,408
_6014
Position (kb)
475
476
477 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 474.960 kb on - strand, within Pf1N1B4_6012 at 474.996 kb on - strand, within Pf1N1B4_6012 at 475.149 kb on + strand, within Pf1N1B4_6012 at 475.150 kb on - strand, within Pf1N1B4_6012 at 475.150 kb on - strand at 475.162 kb on + strand, within Pf1N1B4_6012 at 475.277 kb on + strand, within Pf1N1B4_6012 at 475.309 kb on - strand, within Pf1N1B4_6012 at 475.372 kb on + strand at 475.372 kb on + strand, within Pf1N1B4_6012 at 475.433 kb on + strand, within Pf1N1B4_6012 at 475.462 kb on + strand at 475.503 kb on + strand, within Pf1N1B4_6012 at 475.608 kb on + strand at 475.700 kb on + strand at 475.701 kb on - strand at 475.726 kb on + strand at 475.737 kb on + strand at 475.817 kb on + strand at 475.817 kb on + strand at 476.016 kb on + strand, within Pf1N1B4_6013 at 476.017 kb on - strand, within Pf1N1B4_6013 at 476.017 kb on - strand, within Pf1N1B4_6013 at 476.120 kb on - strand, within Pf1N1B4_6013 at 476.274 kb on - strand, within Pf1N1B4_6013 at 476.334 kb on + strand, within Pf1N1B4_6013 at 476.550 kb on + strand, within Pf1N1B4_6013 at 476.588 kb on - strand, within Pf1N1B4_6013 at 476.682 kb on + strand, within Pf1N1B4_6013 at 476.708 kb on - strand, within Pf1N1B4_6013 at 476.708 kb on - strand, within Pf1N1B4_6013 at 476.709 kb on + strand, within Pf1N1B4_6013 at 476.710 kb on - strand, within Pf1N1B4_6013 at 476.710 kb on - strand, within Pf1N1B4_6013 at 476.710 kb on - strand, within Pf1N1B4_6013 at 476.797 kb on + strand at 476.797 kb on + strand at 476.802 kb on + strand at 476.814 kb on + strand at 476.839 kb on + strand at 476.839 kb on + strand at 476.914 kb on - strand at 476.917 kb on - strand at 476.917 kb on - strand at 476.917 kb on - strand at 476.917 kb on - strand at 476.949 kb on + strand at 476.949 kb on + strand at 476.950 kb on - strand at 476.950 kb on - strand at 476.950 kb on - strand at 476.970 kb on - strand at 477.028 kb on - strand at 477.042 kb on + strand at 477.043 kb on - strand at 477.071 kb on - strand, within Pf1N1B4_6014 at 477.211 kb on + strand, within Pf1N1B4_6014 at 477.220 kb on + strand, within Pf1N1B4_6014 at 477.220 kb on + strand at 477.220 kb on + strand, within Pf1N1B4_6014 at 477.221 kb on - strand, within Pf1N1B4_6014 at 477.414 kb on - strand, within Pf1N1B4_6014 at 477.504 kb on + strand, within Pf1N1B4_6014 at 477.504 kb on + strand, within Pf1N1B4_6014 at 477.504 kb on + strand, within Pf1N1B4_6014 at 477.578 kb on + strand, within Pf1N1B4_6014 at 477.578 kb on + strand at 477.579 kb on - strand, within Pf1N1B4_6014 at 477.579 kb on - strand, within Pf1N1B4_6014 at 477.579 kb on - strand, within Pf1N1B4_6014 at 477.579 kb on - strand, within Pf1N1B4_6014 at 477.579 kb on - strand at 477.579 kb on - strand, within Pf1N1B4_6014 at 477.725 kb on + strand, within Pf1N1B4_6014 at 477.725 kb on + strand, within Pf1N1B4_6014 at 477.726 kb on - strand, within Pf1N1B4_6014 at 477.726 kb on - strand, within Pf1N1B4_6014
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 1 mM remove 474,960 - Pf1N1B4_6012 0.69 -0.7 474,996 - Pf1N1B4_6012 0.70 -1.6 475,149 + Pf1N1B4_6012 0.75 +1.2 475,150 - Pf1N1B4_6012 0.75 +1.6 475,150 - +0.6 475,162 + Pf1N1B4_6012 0.76 -1.3 475,277 + Pf1N1B4_6012 0.79 +0.2 475,309 - Pf1N1B4_6012 0.80 +0.6 475,372 + -1.4 475,372 + Pf1N1B4_6012 0.82 +0.2 475,433 + Pf1N1B4_6012 0.84 -0.4 475,462 + -0.4 475,503 + Pf1N1B4_6012 0.87 -0.7 475,608 + +1.0 475,700 + -0.8 475,701 - -1.1 475,726 + +0.6 475,737 + -0.7 475,817 + -2.2 475,817 + -0.1 476,016 + Pf1N1B4_6013 0.12 -1.2 476,017 - Pf1N1B4_6013 0.12 +0.6 476,017 - Pf1N1B4_6013 0.12 -1.7 476,120 - Pf1N1B4_6013 0.23 -2.6 476,274 - Pf1N1B4_6013 0.41 -2.9 476,334 + Pf1N1B4_6013 0.47 -1.4 476,550 + Pf1N1B4_6013 0.71 -1.0 476,588 - Pf1N1B4_6013 0.75 -0.7 476,682 + Pf1N1B4_6013 0.86 +2.2 476,708 - Pf1N1B4_6013 0.89 -1.5 476,708 - Pf1N1B4_6013 0.89 -2.9 476,709 + Pf1N1B4_6013 0.89 +1.3 476,710 - Pf1N1B4_6013 0.89 -0.3 476,710 - Pf1N1B4_6013 0.89 +1.2 476,710 - Pf1N1B4_6013 0.89 -2.0 476,797 + -0.4 476,797 + -0.2 476,802 + -1.0 476,814 + -2.4 476,839 + -1.2 476,839 + -1.0 476,914 - -0.2 476,917 - +0.6 476,917 - +0.6 476,917 - -0.8 476,917 - -0.9 476,949 + -0.7 476,949 + +1.9 476,950 - +0.1 476,950 - -0.2 476,950 - +1.6 476,970 - -2.0 477,028 - -1.0 477,042 + -2.0 477,043 - +0.6 477,071 - Pf1N1B4_6014 0.10 -1.1 477,211 + Pf1N1B4_6014 0.16 +1.2 477,220 + Pf1N1B4_6014 0.16 -1.0 477,220 + -0.4 477,220 + Pf1N1B4_6014 0.16 -0.4 477,221 - Pf1N1B4_6014 0.16 +0.4 477,414 - Pf1N1B4_6014 0.23 -1.0 477,504 + Pf1N1B4_6014 0.27 +0.6 477,504 + Pf1N1B4_6014 0.27 +0.2 477,504 + Pf1N1B4_6014 0.27 +2.2 477,578 + Pf1N1B4_6014 0.30 +1.4 477,578 + +1.6 477,579 - Pf1N1B4_6014 0.30 -0.9 477,579 - Pf1N1B4_6014 0.30 -0.6 477,579 - Pf1N1B4_6014 0.30 +1.1 477,579 - Pf1N1B4_6014 0.30 -0.0 477,579 - +0.6 477,579 - Pf1N1B4_6014 0.30 -0.7 477,725 + Pf1N1B4_6014 0.35 -0.6 477,725 + Pf1N1B4_6014 0.35 +0.6 477,726 - Pf1N1B4_6014 0.35 -0.7 477,726 - Pf1N1B4_6014 0.35 -0.2
Or see this region's nucleotide sequence