Experiment: Chlorite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5977 and Pf1N1B4_5978 are separated by 212 nucleotides Pf1N1B4_5978 and Pf1N1B4_5979 are separated by 120 nucleotides
Pf1N1B4_5977 - Transporter, MFS superfamily, at 424,806 to 426,203
_5977
Pf1N1B4_5978 - Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26), at 426,416 to 427,996
_5978
Pf1N1B4_5979 - Ureidoglycolate/malate/sulfolactate dehydrogenase family (EC 1.1.1.-), at 428,117 to 429,124
_5979
Position (kb) 426
427
428 Strain fitness (log2 ratio) -2
-1
0
1
2 at 425.598 kb on + strand, within Pf1N1B4_5977 at 425.599 kb on - strand at 425.599 kb on - strand, within Pf1N1B4_5977 at 425.625 kb on + strand, within Pf1N1B4_5977 at 425.721 kb on + strand, within Pf1N1B4_5977 at 425.877 kb on + strand, within Pf1N1B4_5977 at 425.877 kb on + strand, within Pf1N1B4_5977 at 425.877 kb on + strand, within Pf1N1B4_5977 at 425.877 kb on + strand, within Pf1N1B4_5977 at 425.878 kb on - strand at 425.878 kb on - strand, within Pf1N1B4_5977 at 426.015 kb on + strand, within Pf1N1B4_5977 at 426.016 kb on - strand, within Pf1N1B4_5977 at 426.210 kb on + strand at 426.210 kb on + strand at 426.210 kb on + strand at 426.210 kb on + strand at 426.210 kb on + strand at 426.276 kb on + strand at 426.385 kb on + strand at 426.385 kb on + strand at 426.440 kb on + strand at 426.733 kb on + strand, within Pf1N1B4_5978 at 426.786 kb on - strand at 426.786 kb on - strand, within Pf1N1B4_5978 at 427.070 kb on + strand, within Pf1N1B4_5978 at 427.070 kb on + strand, within Pf1N1B4_5978 at 427.070 kb on + strand, within Pf1N1B4_5978 at 427.070 kb on + strand, within Pf1N1B4_5978 at 427.070 kb on + strand, within Pf1N1B4_5978 at 427.071 kb on - strand, within Pf1N1B4_5978 at 427.071 kb on - strand, within Pf1N1B4_5978 at 427.141 kb on - strand, within Pf1N1B4_5978 at 427.442 kb on + strand, within Pf1N1B4_5978 at 427.483 kb on - strand, within Pf1N1B4_5978 at 428.145 kb on + strand at 428.146 kb on - strand at 428.146 kb on - strand at 428.361 kb on + strand, within Pf1N1B4_5979 at 428.362 kb on - strand, within Pf1N1B4_5979 at 428.362 kb on - strand, within Pf1N1B4_5979 at 428.711 kb on - strand, within Pf1N1B4_5979 at 428.711 kb on - strand, within Pf1N1B4_5979
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 1 mM remove 425,598 + Pf1N1B4_5977 0.57 -2.0 425,599 - -1.2 425,599 - Pf1N1B4_5977 0.57 -0.2 425,625 + Pf1N1B4_5977 0.59 -2.0 425,721 + Pf1N1B4_5977 0.65 -0.3 425,877 + Pf1N1B4_5977 0.77 +0.8 425,877 + Pf1N1B4_5977 0.77 +0.6 425,877 + Pf1N1B4_5977 0.77 -0.3 425,877 + Pf1N1B4_5977 0.77 +0.8 425,878 - -1.6 425,878 - Pf1N1B4_5977 0.77 +0.6 426,015 + Pf1N1B4_5977 0.86 -0.4 426,016 - Pf1N1B4_5977 0.87 +0.2 426,210 + +0.2 426,210 + -0.0 426,210 + +0.8 426,210 + +1.6 426,210 + -0.6 426,276 + +0.6 426,385 + -0.6 426,385 + -0.2 426,440 + -2.0 426,733 + Pf1N1B4_5978 0.20 -0.5 426,786 - -1.0 426,786 - Pf1N1B4_5978 0.23 -0.3 427,070 + Pf1N1B4_5978 0.41 +1.2 427,070 + Pf1N1B4_5978 0.41 -0.2 427,070 + Pf1N1B4_5978 0.41 +0.2 427,070 + Pf1N1B4_5978 0.41 +0.4 427,070 + Pf1N1B4_5978 0.41 +0.6 427,071 - Pf1N1B4_5978 0.41 -0.9 427,071 - Pf1N1B4_5978 0.41 -0.0 427,141 - Pf1N1B4_5978 0.46 +0.5 427,442 + Pf1N1B4_5978 0.65 +1.4 427,483 - Pf1N1B4_5978 0.67 +2.0 428,145 + +0.3 428,146 - +1.2 428,146 - -0.1 428,361 + Pf1N1B4_5979 0.24 +0.6 428,362 - Pf1N1B4_5979 0.24 -0.7 428,362 - Pf1N1B4_5979 0.24 -1.2 428,711 - Pf1N1B4_5979 0.59 +0.1 428,711 - Pf1N1B4_5979 0.59 -1.4
Or see this region's nucleotide sequence