Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5958

Experiment: Chlorite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5956 and Pf1N1B4_5957 overlap by 1 nucleotidesPf1N1B4_5957 and Pf1N1B4_5958 are separated by 183 nucleotidesPf1N1B4_5958 and Pf1N1B4_5959 are separated by 311 nucleotidesPf1N1B4_5959 and Pf1N1B4_5960 are separated by 7 nucleotides Pf1N1B4_5956 - NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12), at 404,651 to 405,703 _5956 Pf1N1B4_5957 - Arsenical resistance operon repressor, at 405,703 to 406,065 _5957 Pf1N1B4_5958 - Ferrichrome-iron receptor, at 406,249 to 408,372 _5958 Pf1N1B4_5959 - Probable signal peptide protein, at 408,684 to 408,947 _5959 Pf1N1B4_5960 - Cytochrome b, at 408,955 to 409,482 _5960 Position (kb) 406 407 408 409Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 405.334 kb on - strand, within Pf1N1B4_5956at 405.650 kb on - strandat 405.852 kb on - strand, within Pf1N1B4_5957at 405.854 kb on + strand, within Pf1N1B4_5957at 405.855 kb on - strand, within Pf1N1B4_5957at 405.897 kb on + strand, within Pf1N1B4_5957at 405.898 kb on - strand, within Pf1N1B4_5957at 406.106 kb on + strandat 406.133 kb on - strandat 406.149 kb on - strandat 406.270 kb on + strandat 406.307 kb on + strandat 406.308 kb on - strandat 406.308 kb on - strandat 406.388 kb on - strandat 406.603 kb on + strand, within Pf1N1B4_5958at 406.603 kb on + strand, within Pf1N1B4_5958at 406.604 kb on - strand, within Pf1N1B4_5958at 406.604 kb on - strand, within Pf1N1B4_5958at 406.604 kb on - strand, within Pf1N1B4_5958at 406.604 kb on - strand, within Pf1N1B4_5958at 406.604 kb on - strand, within Pf1N1B4_5958at 406.604 kb on - strandat 406.634 kb on - strand, within Pf1N1B4_5958at 406.634 kb on - strand, within Pf1N1B4_5958at 406.728 kb on + strand, within Pf1N1B4_5958at 406.729 kb on - strandat 406.729 kb on - strand, within Pf1N1B4_5958at 406.729 kb on - strand, within Pf1N1B4_5958at 406.903 kb on + strand, within Pf1N1B4_5958at 406.904 kb on - strand, within Pf1N1B4_5958at 406.904 kb on - strand, within Pf1N1B4_5958at 407.090 kb on - strandat 407.090 kb on - strand, within Pf1N1B4_5958at 407.176 kb on + strand, within Pf1N1B4_5958at 407.176 kb on + strand, within Pf1N1B4_5958at 407.177 kb on - strand, within Pf1N1B4_5958at 407.177 kb on - strand, within Pf1N1B4_5958at 407.182 kb on + strandat 407.525 kb on - strand, within Pf1N1B4_5958at 407.588 kb on + strand, within Pf1N1B4_5958at 407.589 kb on - strand, within Pf1N1B4_5958at 407.589 kb on - strand, within Pf1N1B4_5958at 407.602 kb on + strand, within Pf1N1B4_5958at 407.603 kb on - strand, within Pf1N1B4_5958at 407.698 kb on + strand, within Pf1N1B4_5958at 407.699 kb on - strand, within Pf1N1B4_5958at 407.701 kb on + strand, within Pf1N1B4_5958at 407.701 kb on + strand, within Pf1N1B4_5958at 407.702 kb on - strand, within Pf1N1B4_5958at 407.723 kb on - strand, within Pf1N1B4_5958at 407.758 kb on - strand, within Pf1N1B4_5958at 407.758 kb on - strand, within Pf1N1B4_5958at 407.986 kb on + strandat 407.986 kb on + strand, within Pf1N1B4_5958at 408.001 kb on + strand, within Pf1N1B4_5958at 408.001 kb on + strand, within Pf1N1B4_5958at 408.151 kb on + strand, within Pf1N1B4_5958at 408.151 kb on + strand, within Pf1N1B4_5958at 408.151 kb on + strand, within Pf1N1B4_5958at 408.151 kb on + strand, within Pf1N1B4_5958at 408.152 kb on - strand, within Pf1N1B4_5958at 408.152 kb on - strandat 408.152 kb on - strand, within Pf1N1B4_5958at 408.152 kb on - strand, within Pf1N1B4_5958at 408.152 kb on - strand, within Pf1N1B4_5958at 408.152 kb on - strandat 408.152 kb on - strand, within Pf1N1B4_5958at 408.202 kb on + strandat 408.202 kb on + strandat 408.202 kb on + strandat 408.202 kb on + strandat 408.286 kb on + strandat 408.286 kb on + strandat 408.287 kb on - strandat 408.287 kb on - strandat 408.287 kb on - strandat 408.289 kb on + strandat 408.289 kb on + strandat 408.289 kb on + strandat 408.361 kb on + strandat 408.411 kb on + strandat 408.411 kb on + strandat 408.412 kb on - strandat 408.412 kb on - strandat 408.528 kb on + strandat 408.529 kb on - strandat 408.537 kb on - strandat 408.542 kb on + strandat 408.542 kb on + strandat 408.543 kb on - strandat 408.667 kb on + strandat 408.667 kb on + strandat 408.667 kb on + strandat 408.667 kb on + strandat 408.668 kb on - strandat 408.668 kb on - strandat 408.690 kb on - strandat 408.817 kb on - strand, within Pf1N1B4_5959at 408.855 kb on + strand, within Pf1N1B4_5959at 408.865 kb on - strand, within Pf1N1B4_5959at 408.865 kb on - strand, within Pf1N1B4_5959at 408.865 kb on - strand, within Pf1N1B4_5959at 408.900 kb on + strand, within Pf1N1B4_5959at 408.900 kb on + strand, within Pf1N1B4_5959at 408.900 kb on + strand, within Pf1N1B4_5959at 408.901 kb on - strandat 408.901 kb on - strand, within Pf1N1B4_5959at 408.945 kb on + strandat 408.992 kb on + strandat 408.992 kb on + strandat 408.996 kb on + strandat 408.996 kb on + strandat 408.996 kb on + strandat 408.996 kb on + strandat 408.996 kb on + strandat 408.996 kb on + strandat 408.996 kb on + strandat 409.084 kb on + strand, within Pf1N1B4_5960at 409.085 kb on - strand, within Pf1N1B4_5960at 409.091 kb on + strand, within Pf1N1B4_5960at 409.092 kb on - strand, within Pf1N1B4_5960at 409.321 kb on + strand, within Pf1N1B4_5960at 409.321 kb on + strand, within Pf1N1B4_5960at 409.322 kb on - strand, within Pf1N1B4_5960at 409.322 kb on - strand, within Pf1N1B4_5960

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 1 mM
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405,334 - Pf1N1B4_5956 0.65 -1.0
405,650 - -0.4
405,852 - Pf1N1B4_5957 0.41 -1.9
405,854 + Pf1N1B4_5957 0.42 +0.6
405,855 - Pf1N1B4_5957 0.42 -1.0
405,897 + Pf1N1B4_5957 0.53 -1.5
405,898 - Pf1N1B4_5957 0.54 -0.1
406,106 + -1.4
406,133 - -2.4
406,149 - +0.4
406,270 + -1.7
406,307 + -0.2
406,308 - -3.4
406,308 - -1.0
406,388 - -1.0
406,603 + Pf1N1B4_5958 0.17 +0.3
406,603 + Pf1N1B4_5958 0.17 -1.0
406,604 - Pf1N1B4_5958 0.17 +1.0
406,604 - Pf1N1B4_5958 0.17 -2.6
406,604 - Pf1N1B4_5958 0.17 -2.0
406,604 - Pf1N1B4_5958 0.17 +1.4
406,604 - Pf1N1B4_5958 0.17 -0.6
406,604 - -0.7
406,634 - Pf1N1B4_5958 0.18 +0.6
406,634 - Pf1N1B4_5958 0.18 -0.4
406,728 + Pf1N1B4_5958 0.23 +0.8
406,729 - -0.4
406,729 - Pf1N1B4_5958 0.23 -0.2
406,729 - Pf1N1B4_5958 0.23 -0.4
406,903 + Pf1N1B4_5958 0.31 -1.5
406,904 - Pf1N1B4_5958 0.31 -0.6
406,904 - Pf1N1B4_5958 0.31 -0.4
407,090 - -1.4
407,090 - Pf1N1B4_5958 0.40 -0.7
407,176 + Pf1N1B4_5958 0.44 -0.4
407,176 + Pf1N1B4_5958 0.44 -0.6
407,177 - Pf1N1B4_5958 0.44 -2.4
407,177 - Pf1N1B4_5958 0.44 +0.6
407,182 + -1.0
407,525 - Pf1N1B4_5958 0.60 +0.6
407,588 + Pf1N1B4_5958 0.63 -0.0
407,589 - Pf1N1B4_5958 0.63 -1.9
407,589 - Pf1N1B4_5958 0.63 +0.5
407,602 + Pf1N1B4_5958 0.64 +0.4
407,603 - Pf1N1B4_5958 0.64 +0.3
407,698 + Pf1N1B4_5958 0.68 -0.4
407,699 - Pf1N1B4_5958 0.68 +0.4
407,701 + Pf1N1B4_5958 0.68 -1.4
407,701 + Pf1N1B4_5958 0.68 -0.2
407,702 - Pf1N1B4_5958 0.68 -3.3
407,723 - Pf1N1B4_5958 0.69 +0.6
407,758 - Pf1N1B4_5958 0.71 +0.1
407,758 - Pf1N1B4_5958 0.71 +1.6
407,986 + +0.6
407,986 + Pf1N1B4_5958 0.82 +0.2
408,001 + Pf1N1B4_5958 0.82 -0.9
408,001 + Pf1N1B4_5958 0.82 -0.7
408,151 + Pf1N1B4_5958 0.90 +1.8
408,151 + Pf1N1B4_5958 0.90 +0.3
408,151 + Pf1N1B4_5958 0.90 -0.1
408,151 + Pf1N1B4_5958 0.90 -1.9
408,152 - Pf1N1B4_5958 0.90 -1.0
408,152 - +1.4
408,152 - Pf1N1B4_5958 0.90 -2.4
408,152 - Pf1N1B4_5958 0.90 +0.1
408,152 - Pf1N1B4_5958 0.90 -0.0
408,152 - +2.6
408,152 - Pf1N1B4_5958 0.90 -0.0
408,202 + -1.4
408,202 + +0.4
408,202 + -0.4
408,202 + -0.1
408,286 + +0.6
408,286 + -1.4
408,287 - +0.3
408,287 - -2.2
408,287 - -0.2
408,289 + -0.4
408,289 + +2.6
408,289 + -0.4
408,361 + -1.4
408,411 + -0.7
408,411 + -0.9
408,412 - +0.3
408,412 - +0.6
408,528 + +0.8
408,529 - -0.5
408,537 - -0.0
408,542 + +0.2
408,542 + +1.0
408,543 - -1.4
408,667 + -0.0
408,667 + -0.7
408,667 + -1.0
408,667 + -1.0
408,668 - -1.7
408,668 - +1.0
408,690 - -1.7
408,817 - Pf1N1B4_5959 0.50 -0.0
408,855 + Pf1N1B4_5959 0.65 -0.6
408,865 - Pf1N1B4_5959 0.69 -0.0
408,865 - Pf1N1B4_5959 0.69 +0.8
408,865 - Pf1N1B4_5959 0.69 -0.3
408,900 + Pf1N1B4_5959 0.82 -0.6
408,900 + Pf1N1B4_5959 0.82 -0.0
408,900 + Pf1N1B4_5959 0.82 -0.2
408,901 - -1.2
408,901 - Pf1N1B4_5959 0.82 -0.6
408,945 + -1.4
408,992 + -1.7
408,992 + +0.2
408,996 + -0.2
408,996 + +0.6
408,996 + -0.2
408,996 + +0.3
408,996 + -0.2
408,996 + +0.6
408,996 + -0.0
409,084 + Pf1N1B4_5960 0.24 -0.3
409,085 - Pf1N1B4_5960 0.25 +0.8
409,091 + Pf1N1B4_5960 0.26 +0.1
409,092 - Pf1N1B4_5960 0.26 +0.4
409,321 + Pf1N1B4_5960 0.69 -2.4
409,321 + Pf1N1B4_5960 0.69 -1.0
409,322 - Pf1N1B4_5960 0.70 -1.7
409,322 - Pf1N1B4_5960 0.70 +0.7

Or see this region's nucleotide sequence