Experiment: Chlorite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_592 and Pf1N1B4_593 are separated by 222 nucleotides Pf1N1B4_593 and Pf1N1B4_594 are separated by 3 nucleotides Pf1N1B4_594 and Pf1N1B4_595 overlap by 8 nucleotides
Pf1N1B4_592 - Glucose-selective porin OprB, at 682,990 to 684,336
_592
Pf1N1B4_593 - Glucose ABC transporter, ATP-binding subunit (EC 3.6.3.-), at 684,559 to 685,719
_593
Pf1N1B4_594 - Glucose ABC transport system, inner membrane component 2, at 685,723 to 686,568
_594
Pf1N1B4_595 - Glucose ABC transport system, inner membrane component 1, at 686,561 to 687,505
_595
Position (kb) 684
685
686 Strain fitness (log2 ratio) -2
-1
0
1
2 at 683.614 kb on - strand, within Pf1N1B4_592 at 683.672 kb on + strand, within Pf1N1B4_592 at 683.672 kb on + strand, within Pf1N1B4_592 at 683.690 kb on + strand, within Pf1N1B4_592 at 683.691 kb on - strand, within Pf1N1B4_592 at 683.691 kb on - strand, within Pf1N1B4_592 at 683.711 kb on + strand, within Pf1N1B4_592 at 683.711 kb on + strand, within Pf1N1B4_592 at 683.712 kb on - strand, within Pf1N1B4_592 at 683.712 kb on - strand, within Pf1N1B4_592 at 683.712 kb on - strand, within Pf1N1B4_592 at 683.712 kb on - strand, within Pf1N1B4_592 at 683.712 kb on - strand, within Pf1N1B4_592 at 683.919 kb on + strand, within Pf1N1B4_592 at 683.933 kb on + strand, within Pf1N1B4_592 at 683.933 kb on + strand, within Pf1N1B4_592 at 683.934 kb on - strand, within Pf1N1B4_592 at 683.988 kb on + strand, within Pf1N1B4_592 at 683.988 kb on + strand, within Pf1N1B4_592 at 684.099 kb on - strand, within Pf1N1B4_592 at 684.123 kb on - strand, within Pf1N1B4_592 at 684.158 kb on + strand, within Pf1N1B4_592 at 684.178 kb on - strand, within Pf1N1B4_592 at 684.309 kb on + strand at 684.309 kb on + strand at 684.309 kb on + strand at 684.310 kb on - strand at 684.340 kb on + strand at 684.340 kb on + strand at 684.341 kb on - strand at 684.355 kb on - strand at 684.360 kb on + strand at 684.360 kb on + strand at 684.363 kb on + strand at 684.364 kb on - strand at 684.373 kb on + strand at 684.377 kb on + strand at 684.378 kb on - strand at 684.378 kb on - strand at 684.388 kb on - strand at 684.509 kb on - strand at 684.557 kb on - strand at 684.580 kb on + strand at 684.969 kb on + strand, within Pf1N1B4_593 at 685.049 kb on + strand, within Pf1N1B4_593 at 685.049 kb on + strand at 685.049 kb on + strand, within Pf1N1B4_593 at 685.050 kb on - strand, within Pf1N1B4_593 at 685.050 kb on - strand, within Pf1N1B4_593 at 685.050 kb on - strand, within Pf1N1B4_593 at 685.050 kb on - strand, within Pf1N1B4_593 at 685.050 kb on - strand, within Pf1N1B4_593 at 685.050 kb on - strand, within Pf1N1B4_593 at 685.050 kb on - strand, within Pf1N1B4_593 at 685.148 kb on + strand, within Pf1N1B4_593 at 685.148 kb on + strand, within Pf1N1B4_593 at 685.251 kb on - strand, within Pf1N1B4_593 at 685.251 kb on - strand, within Pf1N1B4_593 at 685.590 kb on + strand, within Pf1N1B4_593 at 685.591 kb on - strand, within Pf1N1B4_593 at 685.591 kb on - strand, within Pf1N1B4_593 at 685.682 kb on + strand at 685.682 kb on + strand at 685.682 kb on + strand at 685.683 kb on - strand at 685.702 kb on + strand at 685.703 kb on - strand at 685.703 kb on - strand at 685.763 kb on + strand at 685.764 kb on - strand at 685.777 kb on + strand at 685.778 kb on - strand at 685.778 kb on - strand at 685.781 kb on + strand at 685.781 kb on + strand at 685.781 kb on + strand at 685.781 kb on + strand at 685.782 kb on - strand at 685.835 kb on + strand, within Pf1N1B4_594 at 685.835 kb on + strand, within Pf1N1B4_594 at 685.835 kb on + strand, within Pf1N1B4_594 at 685.835 kb on + strand, within Pf1N1B4_594 at 685.836 kb on - strand, within Pf1N1B4_594 at 685.836 kb on - strand, within Pf1N1B4_594 at 686.075 kb on + strand, within Pf1N1B4_594 at 686.075 kb on + strand, within Pf1N1B4_594 at 686.075 kb on + strand, within Pf1N1B4_594 at 686.075 kb on + strand, within Pf1N1B4_594 at 686.076 kb on - strand, within Pf1N1B4_594 at 686.076 kb on - strand, within Pf1N1B4_594 at 686.076 kb on - strand, within Pf1N1B4_594 at 686.076 kb on - strand, within Pf1N1B4_594 at 686.078 kb on + strand, within Pf1N1B4_594 at 686.078 kb on + strand, within Pf1N1B4_594 at 686.078 kb on + strand, within Pf1N1B4_594 at 686.078 kb on + strand at 686.079 kb on - strand, within Pf1N1B4_594 at 686.079 kb on - strand, within Pf1N1B4_594 at 686.079 kb on - strand, within Pf1N1B4_594 at 686.279 kb on + strand, within Pf1N1B4_594 at 686.280 kb on - strand at 686.304 kb on + strand, within Pf1N1B4_594 at 686.304 kb on + strand, within Pf1N1B4_594 at 686.305 kb on - strand, within Pf1N1B4_594 at 686.305 kb on - strand, within Pf1N1B4_594 at 686.305 kb on - strand, within Pf1N1B4_594 at 686.486 kb on + strand at 686.486 kb on + strand at 686.486 kb on + strand at 686.487 kb on - strand at 686.487 kb on - strand at 686.487 kb on - strand at 686.487 kb on - strand at 686.516 kb on + strand at 686.516 kb on + strand at 686.516 kb on + strand at 686.516 kb on + strand at 686.516 kb on + strand at 686.532 kb on + strand at 686.563 kb on - strand at 686.688 kb on + strand, within Pf1N1B4_595 at 686.688 kb on + strand, within Pf1N1B4_595 at 686.688 kb on + strand, within Pf1N1B4_595 at 686.689 kb on - strand, within Pf1N1B4_595 at 686.718 kb on + strand, within Pf1N1B4_595 at 686.719 kb on - strand, within Pf1N1B4_595
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 1 mM remove 683,614 - Pf1N1B4_592 0.46 +1.9 683,672 + Pf1N1B4_592 0.51 -0.1 683,672 + Pf1N1B4_592 0.51 -2.3 683,690 + Pf1N1B4_592 0.52 -0.7 683,691 - Pf1N1B4_592 0.52 +0.9 683,691 - Pf1N1B4_592 0.52 -0.1 683,711 + Pf1N1B4_592 0.54 -0.7 683,711 + Pf1N1B4_592 0.54 -1.0 683,712 - Pf1N1B4_592 0.54 +0.7 683,712 - Pf1N1B4_592 0.54 -1.1 683,712 - Pf1N1B4_592 0.54 -1.5 683,712 - Pf1N1B4_592 0.54 +1.2 683,712 - Pf1N1B4_592 0.54 -0.4 683,919 + Pf1N1B4_592 0.69 +0.2 683,933 + Pf1N1B4_592 0.70 -0.7 683,933 + Pf1N1B4_592 0.70 -1.5 683,934 - Pf1N1B4_592 0.70 -0.3 683,988 + Pf1N1B4_592 0.74 -0.4 683,988 + Pf1N1B4_592 0.74 +0.9 684,099 - Pf1N1B4_592 0.82 -0.5 684,123 - Pf1N1B4_592 0.84 +0.2 684,158 + Pf1N1B4_592 0.87 -1.1 684,178 - Pf1N1B4_592 0.88 -0.1 684,309 + -1.4 684,309 + -0.1 684,309 + +0.5 684,310 - -0.1 684,340 + +1.3 684,340 + +0.9 684,341 - +0.2 684,355 - -0.1 684,360 + -1.4 684,360 + -0.1 684,363 + -2.3 684,364 - +0.4 684,373 + -0.4 684,377 + -0.7 684,378 - -1.1 684,378 - +0.2 684,388 - +0.3 684,509 - +0.4 684,557 - -1.1 684,580 + -0.9 684,969 + Pf1N1B4_593 0.35 -1.2 685,049 + Pf1N1B4_593 0.42 -1.4 685,049 + -0.7 685,049 + Pf1N1B4_593 0.42 -1.7 685,050 - Pf1N1B4_593 0.42 +0.5 685,050 - Pf1N1B4_593 0.42 -0.7 685,050 - Pf1N1B4_593 0.42 -0.1 685,050 - Pf1N1B4_593 0.42 -0.7 685,050 - Pf1N1B4_593 0.42 -1.4 685,050 - Pf1N1B4_593 0.42 -1.9 685,050 - Pf1N1B4_593 0.42 -0.4 685,148 + Pf1N1B4_593 0.51 -0.7 685,148 + Pf1N1B4_593 0.51 -0.1 685,251 - Pf1N1B4_593 0.60 -0.1 685,251 - Pf1N1B4_593 0.60 -1.5 685,590 + Pf1N1B4_593 0.89 -0.7 685,591 - Pf1N1B4_593 0.89 -0.2 685,591 - Pf1N1B4_593 0.89 +0.4 685,682 + -0.2 685,682 + -0.9 685,682 + -0.1 685,683 - -0.7 685,702 + -1.3 685,703 - -0.4 685,703 - -1.7 685,763 + -0.7 685,764 - -1.1 685,777 + +0.3 685,778 - -2.5 685,778 - -2.0 685,781 + -0.8 685,781 + +0.6 685,781 + +0.6 685,781 + -2.2 685,782 - +0.1 685,835 + Pf1N1B4_594 0.13 -1.1 685,835 + Pf1N1B4_594 0.13 -0.7 685,835 + Pf1N1B4_594 0.13 -0.7 685,835 + Pf1N1B4_594 0.13 +0.1 685,836 - Pf1N1B4_594 0.13 -1.9 685,836 - Pf1N1B4_594 0.13 -1.9 686,075 + Pf1N1B4_594 0.42 -1.1 686,075 + Pf1N1B4_594 0.42 -0.8 686,075 + Pf1N1B4_594 0.42 -0.8 686,075 + Pf1N1B4_594 0.42 +0.7 686,076 - Pf1N1B4_594 0.42 +0.3 686,076 - Pf1N1B4_594 0.42 -1.0 686,076 - Pf1N1B4_594 0.42 -0.7 686,076 - Pf1N1B4_594 0.42 -2.3 686,078 + Pf1N1B4_594 0.42 -0.7 686,078 + Pf1N1B4_594 0.42 -0.8 686,078 + Pf1N1B4_594 0.42 +0.4 686,078 + -0.3 686,079 - Pf1N1B4_594 0.42 +1.9 686,079 - Pf1N1B4_594 0.42 -1.4 686,079 - Pf1N1B4_594 0.42 +0.7 686,279 + Pf1N1B4_594 0.66 -0.6 686,280 - -0.7 686,304 + Pf1N1B4_594 0.69 -0.7 686,304 + Pf1N1B4_594 0.69 +0.0 686,305 - Pf1N1B4_594 0.69 -1.2 686,305 - Pf1N1B4_594 0.69 +0.9 686,305 - Pf1N1B4_594 0.69 +2.5 686,486 + +0.7 686,486 + +0.3 686,486 + +1.2 686,487 - -0.4 686,487 - +0.1 686,487 - +1.7 686,487 - -0.7 686,516 + -2.5 686,516 + +0.9 686,516 + +0.2 686,516 + -0.7 686,516 + -0.7 686,532 + +0.6 686,563 - +0.2 686,688 + Pf1N1B4_595 0.13 +0.4 686,688 + Pf1N1B4_595 0.13 -0.4 686,688 + Pf1N1B4_595 0.13 -0.4 686,689 - Pf1N1B4_595 0.14 +1.2 686,718 + Pf1N1B4_595 0.17 +0.0 686,719 - Pf1N1B4_595 0.17 +0.3
Or see this region's nucleotide sequence