Experiment: Chlorite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5684 and Pf1N1B4_5685 are separated by 7 nucleotides Pf1N1B4_5685 and Pf1N1B4_5686 are separated by 2 nucleotides Pf1N1B4_5686 and Pf1N1B4_5687 are separated by 132 nucleotides
Pf1N1B4_5684 - Glyceraldehyde-3-phosphate dehydrogenase, putative, at 123,711 to 125,336
_5684
Pf1N1B4_5685 - Permease of the drug/metabolite transporter (DMT) superfamily, at 125,344 to 125,835
_5685
Pf1N1B4_5686 - Permease of the drug/metabolite transporter (DMT) superfamily, at 125,838 to 126,239
_5686
Pf1N1B4_5687 - Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system, at 126,372 to 126,809
_5687
Position (kb) 125
126 Strain fitness (log2 ratio) -2
-1
0
1
2 at 124.424 kb on + strand, within Pf1N1B4_5684 at 124.425 kb on - strand, within Pf1N1B4_5684 at 124.428 kb on + strand, within Pf1N1B4_5684 at 124.429 kb on - strand, within Pf1N1B4_5684 at 124.429 kb on - strand, within Pf1N1B4_5684 at 125.016 kb on + strand, within Pf1N1B4_5684 at 125.017 kb on - strand, within Pf1N1B4_5684 at 125.158 kb on - strand, within Pf1N1B4_5684 at 125.326 kb on - strand at 125.558 kb on + strand, within Pf1N1B4_5685 at 125.558 kb on + strand, within Pf1N1B4_5685 at 125.558 kb on + strand, within Pf1N1B4_5685 at 125.558 kb on + strand at 125.558 kb on + strand, within Pf1N1B4_5685 at 125.559 kb on - strand at 125.559 kb on - strand, within Pf1N1B4_5685 at 125.559 kb on - strand at 125.559 kb on - strand, within Pf1N1B4_5685 at 125.784 kb on - strand, within Pf1N1B4_5685 at 125.935 kb on + strand, within Pf1N1B4_5686 at 125.936 kb on - strand, within Pf1N1B4_5686 at 126.222 kb on + strand at 126.223 kb on - strand at 126.250 kb on + strand at 126.251 kb on - strand at 126.522 kb on + strand, within Pf1N1B4_5687 at 126.523 kb on - strand, within Pf1N1B4_5687 at 126.834 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 1 mM remove 124,424 + Pf1N1B4_5684 0.44 -0.5 124,425 - Pf1N1B4_5684 0.44 +1.9 124,428 + Pf1N1B4_5684 0.44 -1.5 124,429 - Pf1N1B4_5684 0.44 +0.5 124,429 - Pf1N1B4_5684 0.44 -0.4 125,016 + Pf1N1B4_5684 0.80 -1.0 125,017 - Pf1N1B4_5684 0.80 +0.5 125,158 - Pf1N1B4_5684 0.89 -1.1 125,326 - -0.3 125,558 + Pf1N1B4_5685 0.43 -0.3 125,558 + Pf1N1B4_5685 0.43 -0.4 125,558 + Pf1N1B4_5685 0.43 -1.6 125,558 + +2.1 125,558 + Pf1N1B4_5685 0.43 +0.5 125,559 - -0.1 125,559 - Pf1N1B4_5685 0.44 -1.1 125,559 - -1.1 125,559 - Pf1N1B4_5685 0.44 -0.8 125,784 - Pf1N1B4_5685 0.89 -2.1 125,935 + Pf1N1B4_5686 0.24 +0.2 125,936 - Pf1N1B4_5686 0.24 -0.5 126,222 + -1.1 126,223 - -1.1 126,250 + -0.3 126,251 - -0.8 126,522 + Pf1N1B4_5687 0.34 +0.1 126,523 - Pf1N1B4_5687 0.34 +0.2 126,834 - -0.1
Or see this region's nucleotide sequence