Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_561

Experiment: Chlorite 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_560 and Pf1N1B4_561 are separated by 99 nucleotidesPf1N1B4_561 and Pf1N1B4_562 are separated by 143 nucleotides Pf1N1B4_560 - Transcriptional regulators, LysR family, at 657,019 to 657,951 _560 Pf1N1B4_561 - Glutathione S-transferase (EC 2.5.1.18), at 658,051 to 658,653 _561 Pf1N1B4_562 - Histidine transporter, periplasmic histidine-binding protein, at 658,797 to 659,810 _562 Position (kb) 658 659Strain fitness (log2 ratio) -2 -1 0 1 2 3at 657.123 kb on + strand, within Pf1N1B4_560at 657.124 kb on - strand, within Pf1N1B4_560at 657.124 kb on - strand, within Pf1N1B4_560at 657.124 kb on - strand, within Pf1N1B4_560at 657.124 kb on - strand, within Pf1N1B4_560at 657.124 kb on - strand, within Pf1N1B4_560at 657.124 kb on - strand, within Pf1N1B4_560at 657.187 kb on + strand, within Pf1N1B4_560at 657.187 kb on + strand, within Pf1N1B4_560at 657.188 kb on - strand, within Pf1N1B4_560at 657.957 kb on + strandat 657.958 kb on - strandat 658.013 kb on + strandat 658.013 kb on + strandat 658.013 kb on + strandat 658.014 kb on - strandat 658.060 kb on + strandat 658.060 kb on + strandat 658.060 kb on + strandat 658.060 kb on + strandat 658.060 kb on + strandat 658.060 kb on + strandat 658.060 kb on + strandat 658.061 kb on - strandat 658.061 kb on - strandat 658.061 kb on - strandat 658.061 kb on - strandat 658.061 kb on - strandat 658.264 kb on + strand, within Pf1N1B4_561at 658.265 kb on - strand, within Pf1N1B4_561at 658.483 kb on + strand, within Pf1N1B4_561at 658.483 kb on + strandat 658.483 kb on + strandat 658.483 kb on + strand, within Pf1N1B4_561at 658.483 kb on + strand, within Pf1N1B4_561at 658.483 kb on + strand, within Pf1N1B4_561at 658.519 kb on + strand, within Pf1N1B4_561at 658.519 kb on + strand, within Pf1N1B4_561at 658.520 kb on - strand, within Pf1N1B4_561at 658.527 kb on + strand, within Pf1N1B4_561at 658.711 kb on + strandat 658.711 kb on + strandat 658.711 kb on + strandat 658.711 kb on + strandat 658.711 kb on + strandat 658.711 kb on + strandat 658.711 kb on + strandat 658.711 kb on + strandat 658.711 kb on + strandat 658.711 kb on + strandat 658.711 kb on + strandat 658.712 kb on - strandat 658.712 kb on - strandat 658.713 kb on + strandat 658.713 kb on + strandat 658.713 kb on + strandat 658.713 kb on + strandat 658.713 kb on + strandat 658.714 kb on - strandat 658.714 kb on - strandat 658.714 kb on - strandat 658.776 kb on + strandat 658.777 kb on - strandat 658.777 kb on - strandat 658.786 kb on + strandat 658.786 kb on + strandat 658.786 kb on + strandat 658.787 kb on - strandat 658.787 kb on - strandat 658.787 kb on - strandat 658.787 kb on - strandat 658.787 kb on - strandat 658.799 kb on - strandat 658.799 kb on - strandat 658.799 kb on - strandat 658.799 kb on - strandat 659.165 kb on - strand, within Pf1N1B4_562at 659.165 kb on - strand, within Pf1N1B4_562at 659.248 kb on + strand, within Pf1N1B4_562at 659.248 kb on + strand, within Pf1N1B4_562at 659.248 kb on + strand, within Pf1N1B4_562at 659.249 kb on - strand, within Pf1N1B4_562at 659.249 kb on - strand, within Pf1N1B4_562at 659.266 kb on + strandat 659.267 kb on - strand, within Pf1N1B4_562at 659.267 kb on - strand, within Pf1N1B4_562at 659.418 kb on - strand, within Pf1N1B4_562at 659.449 kb on + strand, within Pf1N1B4_562at 659.449 kb on + strand, within Pf1N1B4_562at 659.449 kb on + strand, within Pf1N1B4_562at 659.450 kb on - strand, within Pf1N1B4_562at 659.450 kb on - strand, within Pf1N1B4_562at 659.450 kb on - strand, within Pf1N1B4_562at 659.450 kb on - strand, within Pf1N1B4_562

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 1 mM
remove
657,123 + Pf1N1B4_560 0.11 +1.1
657,124 - Pf1N1B4_560 0.11 +0.2
657,124 - Pf1N1B4_560 0.11 -0.5
657,124 - Pf1N1B4_560 0.11 +0.9
657,124 - Pf1N1B4_560 0.11 -1.0
657,124 - Pf1N1B4_560 0.11 +0.2
657,124 - Pf1N1B4_560 0.11 +0.5
657,187 + Pf1N1B4_560 0.18 -0.2
657,187 + Pf1N1B4_560 0.18 -1.1
657,188 - Pf1N1B4_560 0.18 +1.1
657,957 + +0.9
657,958 - +0.3
658,013 + +1.9
658,013 + -0.3
658,013 + +0.3
658,014 - -0.1
658,060 + -0.3
658,060 + -1.4
658,060 + +0.1
658,060 + -1.0
658,060 + +0.9
658,060 + -1.4
658,060 + -0.1
658,061 - -0.9
658,061 - -0.2
658,061 - -0.1
658,061 - -0.1
658,061 - +0.9
658,264 + Pf1N1B4_561 0.35 +0.2
658,265 - Pf1N1B4_561 0.35 -0.7
658,483 + Pf1N1B4_561 0.72 -0.7
658,483 + -0.7
658,483 + -1.7
658,483 + Pf1N1B4_561 0.72 -1.9
658,483 + Pf1N1B4_561 0.72 -1.9
658,483 + Pf1N1B4_561 0.72 -1.9
658,519 + Pf1N1B4_561 0.78 +0.3
658,519 + Pf1N1B4_561 0.78 -0.6
658,520 - Pf1N1B4_561 0.78 -2.4
658,527 + Pf1N1B4_561 0.79 -0.3
658,711 + -1.9
658,711 + +0.5
658,711 + -1.7
658,711 + +0.9
658,711 + -1.1
658,711 + -2.7
658,711 + +0.3
658,711 + +0.9
658,711 + +0.3
658,711 + +0.9
658,711 + +0.6
658,712 - -1.4
658,712 - -2.1
658,713 + +0.1
658,713 + -0.1
658,713 + -1.9
658,713 + -1.4
658,713 + +0.9
658,714 - -2.3
658,714 - -1.3
658,714 - +0.2
658,776 + -1.4
658,777 - -2.3
658,777 - -0.1
658,786 + -0.1
658,786 + -0.1
658,786 + +0.0
658,787 - -0.7
658,787 - -1.9
658,787 - +0.9
658,787 - +1.1
658,787 - +0.9
658,799 - -2.4
658,799 - -2.6
658,799 - -2.1
658,799 - +0.3
659,165 - Pf1N1B4_562 0.36 +0.1
659,165 - Pf1N1B4_562 0.36 -0.3
659,248 + Pf1N1B4_562 0.44 +1.4
659,248 + Pf1N1B4_562 0.44 -1.1
659,248 + Pf1N1B4_562 0.44 +0.6
659,249 - Pf1N1B4_562 0.45 -0.1
659,249 - Pf1N1B4_562 0.45 +0.5
659,266 + +3.2
659,267 - Pf1N1B4_562 0.46 -1.1
659,267 - Pf1N1B4_562 0.46 -1.9
659,418 - Pf1N1B4_562 0.61 -1.1
659,449 + Pf1N1B4_562 0.64 +0.9
659,449 + Pf1N1B4_562 0.64 +0.2
659,449 + Pf1N1B4_562 0.64 -0.3
659,450 - Pf1N1B4_562 0.64 -0.1
659,450 - Pf1N1B4_562 0.64 -0.4
659,450 - Pf1N1B4_562 0.64 -0.5
659,450 - Pf1N1B4_562 0.64 +0.5

Or see this region's nucleotide sequence