Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5397

Experiment: Chlorite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5396 and Pf1N1B4_5397 are separated by 307 nucleotides Pf1N1B4_5396 - hypothetical protein, at 128,005 to 128,154 _5396 Pf1N1B4_5397 - hypothetical protein, at 128,462 to 129,079 _5397 Position (kb) 128 129 130Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 127.583 kb on - strandat 127.677 kb on + strandat 127.678 kb on - strandat 127.678 kb on - strandat 127.678 kb on - strandat 127.678 kb on - strandat 127.770 kb on + strandat 127.770 kb on + strandat 127.770 kb on + strandat 127.770 kb on + strandat 127.771 kb on - strandat 127.771 kb on - strandat 127.771 kb on - strandat 127.771 kb on - strandat 127.771 kb on - strandat 127.823 kb on + strandat 127.824 kb on - strandat 128.101 kb on - strand, within Pf1N1B4_5396at 128.159 kb on + strandat 128.159 kb on + strandat 128.182 kb on + strandat 128.182 kb on + strandat 128.182 kb on + strandat 128.182 kb on + strandat 128.182 kb on + strandat 128.182 kb on + strandat 128.182 kb on + strandat 128.182 kb on + strandat 128.182 kb on + strandat 128.183 kb on - strandat 128.183 kb on - strandat 128.183 kb on - strandat 128.183 kb on - strandat 128.183 kb on - strandat 128.183 kb on - strandat 128.183 kb on - strandat 128.219 kb on + strandat 128.219 kb on + strandat 128.220 kb on - strandat 128.300 kb on + strandat 128.300 kb on + strandat 128.300 kb on + strandat 128.317 kb on + strandat 128.601 kb on - strand, within Pf1N1B4_5397at 128.601 kb on - strand, within Pf1N1B4_5397at 128.626 kb on - strand, within Pf1N1B4_5397at 128.660 kb on - strand, within Pf1N1B4_5397at 128.702 kb on - strand, within Pf1N1B4_5397at 128.702 kb on - strand, within Pf1N1B4_5397at 128.702 kb on - strand, within Pf1N1B4_5397at 128.702 kb on - strand, within Pf1N1B4_5397at 128.702 kb on - strand, within Pf1N1B4_5397at 128.726 kb on + strand, within Pf1N1B4_5397at 128.727 kb on - strand, within Pf1N1B4_5397at 128.862 kb on + strand, within Pf1N1B4_5397at 128.862 kb on + strand, within Pf1N1B4_5397at 128.862 kb on + strand, within Pf1N1B4_5397at 128.863 kb on - strand, within Pf1N1B4_5397at 128.863 kb on - strand, within Pf1N1B4_5397at 128.863 kb on - strand, within Pf1N1B4_5397at 128.863 kb on - strand, within Pf1N1B4_5397at 128.863 kb on - strand, within Pf1N1B4_5397at 128.863 kb on - strand, within Pf1N1B4_5397at 128.863 kb on - strand, within Pf1N1B4_5397at 128.863 kb on - strand, within Pf1N1B4_5397at 128.863 kb on - strand, within Pf1N1B4_5397at 128.863 kb on - strand, within Pf1N1B4_5397at 128.863 kb on - strand, within Pf1N1B4_5397at 128.863 kb on - strand, within Pf1N1B4_5397at 128.863 kb on - strand, within Pf1N1B4_5397at 128.863 kb on - strand, within Pf1N1B4_5397at 128.929 kb on - strand, within Pf1N1B4_5397at 128.929 kb on - strand, within Pf1N1B4_5397at 128.929 kb on - strand, within Pf1N1B4_5397at 128.955 kb on + strand, within Pf1N1B4_5397at 128.955 kb on + strand, within Pf1N1B4_5397at 128.956 kb on - strand, within Pf1N1B4_5397at 128.956 kb on - strand, within Pf1N1B4_5397at 128.956 kb on - strand, within Pf1N1B4_5397at 128.956 kb on - strand, within Pf1N1B4_5397at 128.956 kb on - strand, within Pf1N1B4_5397at 128.956 kb on - strand, within Pf1N1B4_5397at 128.956 kb on - strand, within Pf1N1B4_5397at 128.956 kb on - strand, within Pf1N1B4_5397at 128.956 kb on - strand, within Pf1N1B4_5397at 128.976 kb on - strand, within Pf1N1B4_5397at 129.004 kb on - strand, within Pf1N1B4_5397at 129.004 kb on - strand, within Pf1N1B4_5397at 129.105 kb on + strandat 129.105 kb on + strandat 129.105 kb on + strandat 129.106 kb on - strandat 129.106 kb on - strandat 129.106 kb on - strandat 129.106 kb on - strandat 129.106 kb on - strandat 129.106 kb on - strandat 129.127 kb on + strandat 129.127 kb on + strandat 129.128 kb on - strandat 129.128 kb on - strandat 129.231 kb on + strandat 129.378 kb on + strandat 129.505 kb on + strandat 129.505 kb on + strandat 129.635 kb on - strandat 129.793 kb on + strandat 129.930 kb on + strandat 129.930 kb on + strandat 129.930 kb on + strandat 130.044 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 1 mM
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127,583 - +0.5
127,677 + +0.9
127,678 - -0.6
127,678 - +0.3
127,678 - -0.2
127,678 - -1.5
127,770 + +1.4
127,770 + +0.2
127,770 + -0.7
127,770 + -1.1
127,771 - +2.1
127,771 - +0.3
127,771 - +0.4
127,771 - -0.3
127,771 - -1.1
127,823 + +0.4
127,824 - +0.2
128,101 - Pf1N1B4_5396 0.64 +0.1
128,159 + +0.9
128,159 + -1.1
128,182 + +0.0
128,182 + +0.4
128,182 + -1.5
128,182 + -1.9
128,182 + +0.5
128,182 + +0.0
128,182 + +0.5
128,182 + -2.9
128,182 + +0.6
128,183 - -0.3
128,183 - -1.1
128,183 - -0.9
128,183 - -1.3
128,183 - +1.1
128,183 - +0.5
128,183 - +0.3
128,219 + +0.9
128,219 + -0.5
128,220 - +0.6
128,300 + -1.3
128,300 + +0.1
128,300 + -0.2
128,317 + +0.4
128,601 - Pf1N1B4_5397 0.22 +0.1
128,601 - Pf1N1B4_5397 0.22 +1.2
128,626 - Pf1N1B4_5397 0.27 +1.1
128,660 - Pf1N1B4_5397 0.32 +0.0
128,702 - Pf1N1B4_5397 0.39 +0.9
128,702 - Pf1N1B4_5397 0.39 -1.5
128,702 - Pf1N1B4_5397 0.39 +0.5
128,702 - Pf1N1B4_5397 0.39 +1.3
128,702 - Pf1N1B4_5397 0.39 +0.3
128,726 + Pf1N1B4_5397 0.43 -1.1
128,727 - Pf1N1B4_5397 0.43 +0.1
128,862 + Pf1N1B4_5397 0.65 -1.1
128,862 + Pf1N1B4_5397 0.65 -0.7
128,862 + Pf1N1B4_5397 0.65 -2.1
128,863 - Pf1N1B4_5397 0.65 +0.1
128,863 - Pf1N1B4_5397 0.65 -0.1
128,863 - Pf1N1B4_5397 0.65 +0.7
128,863 - Pf1N1B4_5397 0.65 +2.4
128,863 - Pf1N1B4_5397 0.65 +0.7
128,863 - Pf1N1B4_5397 0.65 +0.8
128,863 - Pf1N1B4_5397 0.65 -0.7
128,863 - Pf1N1B4_5397 0.65 -0.3
128,863 - Pf1N1B4_5397 0.65 +1.2
128,863 - Pf1N1B4_5397 0.65 +0.9
128,863 - Pf1N1B4_5397 0.65 +0.4
128,863 - Pf1N1B4_5397 0.65 -0.6
128,863 - Pf1N1B4_5397 0.65 -0.4
128,863 - Pf1N1B4_5397 0.65 +0.4
128,929 - Pf1N1B4_5397 0.76 +0.4
128,929 - Pf1N1B4_5397 0.76 +0.6
128,929 - Pf1N1B4_5397 0.76 +0.7
128,955 + Pf1N1B4_5397 0.80 -0.5
128,955 + Pf1N1B4_5397 0.80 +0.2
128,956 - Pf1N1B4_5397 0.80 -0.1
128,956 - Pf1N1B4_5397 0.80 +0.9
128,956 - Pf1N1B4_5397 0.80 +1.4
128,956 - Pf1N1B4_5397 0.80 +1.1
128,956 - Pf1N1B4_5397 0.80 +0.4
128,956 - Pf1N1B4_5397 0.80 -1.3
128,956 - Pf1N1B4_5397 0.80 -1.1
128,956 - Pf1N1B4_5397 0.80 +0.7
128,956 - Pf1N1B4_5397 0.80 -1.0
128,976 - Pf1N1B4_5397 0.83 +0.6
129,004 - Pf1N1B4_5397 0.88 -0.1
129,004 - Pf1N1B4_5397 0.88 +0.1
129,105 + -0.6
129,105 + +0.5
129,105 + -0.5
129,106 - +0.1
129,106 - +0.7
129,106 - +0.6
129,106 - -1.2
129,106 - +0.5
129,106 - -0.1
129,127 + -0.6
129,127 + -1.4
129,128 - +0.7
129,128 - +0.2
129,231 + -0.1
129,378 + -2.0
129,505 + -0.1
129,505 + +0.9
129,635 - -1.5
129,793 + -1.1
129,930 + -0.7
129,930 + -0.8
129,930 + +0.3
130,044 + -0.7

Or see this region's nucleotide sequence