Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5280

Experiment: Chlorite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5278 and Pf1N1B4_5279 are separated by 320 nucleotidesPf1N1B4_5279 and Pf1N1B4_5280 are separated by 160 nucleotidesPf1N1B4_5280 and Pf1N1B4_5281 are separated by 116 nucleotidesPf1N1B4_5281 and Pf1N1B4_5282 are separated by 212 nucleotides Pf1N1B4_5278 - hypothetical protein, at 33,482 to 33,682 _5278 Pf1N1B4_5279 - hypothetical protein, at 34,003 to 34,209 _5279 Pf1N1B4_5280 - Nucleoid-associated protein, at 34,370 to 35,386 _5280 Pf1N1B4_5281 - hypothetical protein, at 35,503 to 36,150 _5281 Pf1N1B4_5282 - Phage protein, at 36,363 to 36,533 _5282 Position (kb) 34 35 36Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 33.484 kb on - strandat 33.484 kb on - strandat 33.627 kb on - strand, within Pf1N1B4_5278at 33.650 kb on + strandat 33.650 kb on + strandat 33.650 kb on + strand, within Pf1N1B4_5278at 33.651 kb on - strand, within Pf1N1B4_5278at 33.651 kb on - strandat 33.651 kb on - strand, within Pf1N1B4_5278at 33.765 kb on + strandat 33.838 kb on + strandat 33.953 kb on + strandat 33.969 kb on - strandat 33.993 kb on + strandat 33.994 kb on - strandat 34.022 kb on + strandat 34.085 kb on + strand, within Pf1N1B4_5279at 34.102 kb on + strand, within Pf1N1B4_5279at 34.102 kb on + strand, within Pf1N1B4_5279at 34.102 kb on + strand, within Pf1N1B4_5279at 34.102 kb on + strand, within Pf1N1B4_5279at 34.103 kb on - strand, within Pf1N1B4_5279at 34.103 kb on - strandat 34.213 kb on + strandat 34.213 kb on + strandat 34.214 kb on - strandat 34.214 kb on - strandat 34.214 kb on - strandat 34.267 kb on + strandat 34.267 kb on + strandat 34.268 kb on - strandat 34.268 kb on - strandat 34.268 kb on - strandat 34.605 kb on + strand, within Pf1N1B4_5280at 34.606 kb on - strand, within Pf1N1B4_5280at 34.836 kb on + strand, within Pf1N1B4_5280at 34.836 kb on + strand, within Pf1N1B4_5280at 34.837 kb on - strand, within Pf1N1B4_5280at 34.861 kb on + strand, within Pf1N1B4_5280at 34.861 kb on + strand, within Pf1N1B4_5280at 34.862 kb on - strand, within Pf1N1B4_5280at 34.862 kb on - strand, within Pf1N1B4_5280at 34.862 kb on - strand, within Pf1N1B4_5280at 34.881 kb on + strandat 34.881 kb on + strand, within Pf1N1B4_5280at 34.881 kb on + strand, within Pf1N1B4_5280at 34.881 kb on + strand, within Pf1N1B4_5280at 34.881 kb on + strand, within Pf1N1B4_5280at 34.881 kb on + strand, within Pf1N1B4_5280at 34.882 kb on - strand, within Pf1N1B4_5280at 34.882 kb on - strand, within Pf1N1B4_5280at 34.882 kb on - strand, within Pf1N1B4_5280at 35.056 kb on - strand, within Pf1N1B4_5280at 35.170 kb on - strand, within Pf1N1B4_5280at 35.170 kb on - strand, within Pf1N1B4_5280at 35.170 kb on - strand, within Pf1N1B4_5280at 35.170 kb on - strand, within Pf1N1B4_5280at 35.234 kb on - strand, within Pf1N1B4_5280at 35.250 kb on + strand, within Pf1N1B4_5280at 35.250 kb on + strand, within Pf1N1B4_5280at 35.250 kb on + strand, within Pf1N1B4_5280at 35.250 kb on + strand, within Pf1N1B4_5280at 35.250 kb on + strand, within Pf1N1B4_5280at 35.251 kb on - strand, within Pf1N1B4_5280at 35.251 kb on - strand, within Pf1N1B4_5280at 35.309 kb on - strandat 35.387 kb on - strandat 35.558 kb on + strandat 35.558 kb on + strandat 35.559 kb on - strandat 35.609 kb on + strand, within Pf1N1B4_5281at 35.609 kb on + strandat 35.610 kb on - strand, within Pf1N1B4_5281at 35.610 kb on - strand, within Pf1N1B4_5281at 35.610 kb on - strand, within Pf1N1B4_5281at 35.610 kb on - strand, within Pf1N1B4_5281at 35.632 kb on + strand, within Pf1N1B4_5281at 35.632 kb on + strand, within Pf1N1B4_5281at 35.633 kb on - strand, within Pf1N1B4_5281at 35.633 kb on - strand, within Pf1N1B4_5281at 35.633 kb on - strand, within Pf1N1B4_5281at 35.633 kb on - strand, within Pf1N1B4_5281at 35.700 kb on + strand, within Pf1N1B4_5281at 35.700 kb on + strand, within Pf1N1B4_5281at 35.701 kb on - strandat 35.701 kb on - strand, within Pf1N1B4_5281at 35.701 kb on - strand, within Pf1N1B4_5281at 35.701 kb on - strand, within Pf1N1B4_5281at 35.701 kb on - strand, within Pf1N1B4_5281at 35.701 kb on - strand, within Pf1N1B4_5281at 35.715 kb on + strand, within Pf1N1B4_5281at 35.715 kb on + strand, within Pf1N1B4_5281at 35.715 kb on + strandat 35.716 kb on - strand, within Pf1N1B4_5281at 35.716 kb on - strand, within Pf1N1B4_5281at 35.747 kb on + strand, within Pf1N1B4_5281at 35.747 kb on + strand, within Pf1N1B4_5281at 35.747 kb on + strand, within Pf1N1B4_5281at 35.747 kb on + strand, within Pf1N1B4_5281at 35.747 kb on + strand, within Pf1N1B4_5281at 35.747 kb on + strand, within Pf1N1B4_5281at 35.748 kb on - strand, within Pf1N1B4_5281at 35.748 kb on - strand, within Pf1N1B4_5281at 35.748 kb on - strand, within Pf1N1B4_5281at 35.748 kb on - strandat 35.748 kb on - strand, within Pf1N1B4_5281at 35.748 kb on - strand, within Pf1N1B4_5281at 35.748 kb on - strand, within Pf1N1B4_5281at 35.748 kb on - strand, within Pf1N1B4_5281at 35.748 kb on - strand, within Pf1N1B4_5281at 35.748 kb on - strand, within Pf1N1B4_5281at 35.793 kb on - strand, within Pf1N1B4_5281at 35.857 kb on + strand, within Pf1N1B4_5281at 35.858 kb on - strand, within Pf1N1B4_5281at 35.858 kb on - strand, within Pf1N1B4_5281at 35.897 kb on + strand, within Pf1N1B4_5281at 35.897 kb on + strand, within Pf1N1B4_5281at 35.897 kb on + strand, within Pf1N1B4_5281at 35.898 kb on - strand, within Pf1N1B4_5281at 35.898 kb on - strand, within Pf1N1B4_5281at 36.150 kb on + strandat 36.151 kb on - strandat 36.151 kb on - strandat 36.171 kb on + strandat 36.171 kb on + strandat 36.223 kb on + strandat 36.223 kb on + strandat 36.223 kb on + strandat 36.223 kb on + strandat 36.223 kb on + strandat 36.224 kb on - strandat 36.224 kb on - strandat 36.224 kb on - strandat 36.224 kb on - strandat 36.224 kb on - strandat 36.224 kb on - strandat 36.224 kb on - strandat 36.224 kb on - strandat 36.224 kb on - strandat 36.341 kb on + strandat 36.341 kb on + strandat 36.341 kb on + strandat 36.341 kb on + strandat 36.341 kb on + strandat 36.341 kb on + strandat 36.341 kb on + strandat 36.342 kb on - strandat 36.342 kb on - strandat 36.342 kb on - strandat 36.342 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 1 mM
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33,484 - +1.6
33,484 - -1.4
33,627 - Pf1N1B4_5278 0.72 +0.2
33,650 + +1.9
33,650 + -0.1
33,650 + Pf1N1B4_5278 0.84 -1.7
33,651 - Pf1N1B4_5278 0.84 -0.9
33,651 - -1.7
33,651 - Pf1N1B4_5278 0.84 -0.3
33,765 + -1.1
33,838 + +0.3
33,953 + +0.6
33,969 - -0.7
33,993 + -0.4
33,994 - +0.2
34,022 + -0.4
34,085 + Pf1N1B4_5279 0.40 -0.8
34,102 + Pf1N1B4_5279 0.48 +0.3
34,102 + Pf1N1B4_5279 0.48 -0.0
34,102 + Pf1N1B4_5279 0.48 +0.9
34,102 + Pf1N1B4_5279 0.48 -1.1
34,103 - Pf1N1B4_5279 0.48 -1.0
34,103 - +0.3
34,213 + +0.0
34,213 + +0.9
34,214 - +1.3
34,214 - +0.0
34,214 - +0.3
34,267 + +0.2
34,267 + +0.1
34,268 - +1.3
34,268 - -1.7
34,268 - -2.3
34,605 + Pf1N1B4_5280 0.23 +1.0
34,606 - Pf1N1B4_5280 0.23 +0.4
34,836 + Pf1N1B4_5280 0.46 +0.4
34,836 + Pf1N1B4_5280 0.46 +0.3
34,837 - Pf1N1B4_5280 0.46 +0.6
34,861 + Pf1N1B4_5280 0.48 -0.7
34,861 + Pf1N1B4_5280 0.48 +0.4
34,862 - Pf1N1B4_5280 0.48 -0.7
34,862 - Pf1N1B4_5280 0.48 +1.6
34,862 - Pf1N1B4_5280 0.48 -0.5
34,881 + -0.9
34,881 + Pf1N1B4_5280 0.50 -2.8
34,881 + Pf1N1B4_5280 0.50 -0.3
34,881 + Pf1N1B4_5280 0.50 -1.9
34,881 + Pf1N1B4_5280 0.50 -0.4
34,881 + Pf1N1B4_5280 0.50 -0.9
34,882 - Pf1N1B4_5280 0.50 +1.4
34,882 - Pf1N1B4_5280 0.50 +0.3
34,882 - Pf1N1B4_5280 0.50 +1.6
35,056 - Pf1N1B4_5280 0.67 -0.0
35,170 - Pf1N1B4_5280 0.79 +0.1
35,170 - Pf1N1B4_5280 0.79 +2.2
35,170 - Pf1N1B4_5280 0.79 -0.1
35,170 - Pf1N1B4_5280 0.79 -0.3
35,234 - Pf1N1B4_5280 0.85 +0.9
35,250 + Pf1N1B4_5280 0.87 -0.5
35,250 + Pf1N1B4_5280 0.87 +0.2
35,250 + Pf1N1B4_5280 0.87 +0.9
35,250 + Pf1N1B4_5280 0.87 +3.2
35,250 + Pf1N1B4_5280 0.87 +0.2
35,251 - Pf1N1B4_5280 0.87 -0.9
35,251 - Pf1N1B4_5280 0.87 +1.2
35,309 - -1.7
35,387 - -2.1
35,558 + -2.1
35,558 + +1.7
35,559 - -0.9
35,609 + Pf1N1B4_5281 0.16 +1.5
35,609 + +0.9
35,610 - Pf1N1B4_5281 0.17 -1.9
35,610 - Pf1N1B4_5281 0.17 +0.2
35,610 - Pf1N1B4_5281 0.17 -0.6
35,610 - Pf1N1B4_5281 0.17 -0.0
35,632 + Pf1N1B4_5281 0.20 -0.5
35,632 + Pf1N1B4_5281 0.20 +0.3
35,633 - Pf1N1B4_5281 0.20 +1.6
35,633 - Pf1N1B4_5281 0.20 -0.6
35,633 - Pf1N1B4_5281 0.20 -0.4
35,633 - Pf1N1B4_5281 0.20 -0.2
35,700 + Pf1N1B4_5281 0.30 -0.7
35,700 + Pf1N1B4_5281 0.30 -1.2
35,701 - +1.4
35,701 - Pf1N1B4_5281 0.31 -1.0
35,701 - Pf1N1B4_5281 0.31 +0.0
35,701 - Pf1N1B4_5281 0.31 -0.1
35,701 - Pf1N1B4_5281 0.31 -1.1
35,701 - Pf1N1B4_5281 0.31 -0.1
35,715 + Pf1N1B4_5281 0.33 +0.9
35,715 + Pf1N1B4_5281 0.33 -0.7
35,715 + +2.4
35,716 - Pf1N1B4_5281 0.33 -0.4
35,716 - Pf1N1B4_5281 0.33 -1.0
35,747 + Pf1N1B4_5281 0.38 +0.1
35,747 + Pf1N1B4_5281 0.38 +0.1
35,747 + Pf1N1B4_5281 0.38 -1.3
35,747 + Pf1N1B4_5281 0.38 +0.6
35,747 + Pf1N1B4_5281 0.38 +1.9
35,747 + Pf1N1B4_5281 0.38 -0.1
35,748 - Pf1N1B4_5281 0.38 -2.5
35,748 - Pf1N1B4_5281 0.38 -0.7
35,748 - Pf1N1B4_5281 0.38 +0.3
35,748 - -0.1
35,748 - Pf1N1B4_5281 0.38 +0.2
35,748 - Pf1N1B4_5281 0.38 +0.6
35,748 - Pf1N1B4_5281 0.38 -2.5
35,748 - Pf1N1B4_5281 0.38 -0.7
35,748 - Pf1N1B4_5281 0.38 +0.5
35,748 - Pf1N1B4_5281 0.38 -0.8
35,793 - Pf1N1B4_5281 0.45 -0.4
35,857 + Pf1N1B4_5281 0.55 +1.4
35,858 - Pf1N1B4_5281 0.55 +2.2
35,858 - Pf1N1B4_5281 0.55 -0.7
35,897 + Pf1N1B4_5281 0.61 -1.9
35,897 + Pf1N1B4_5281 0.61 -0.1
35,897 + Pf1N1B4_5281 0.61 +0.5
35,898 - Pf1N1B4_5281 0.61 +0.3
35,898 - Pf1N1B4_5281 0.61 -0.6
36,150 + -0.7
36,151 - +0.9
36,151 - -1.5
36,171 + +0.5
36,171 + +0.3
36,223 + +0.7
36,223 + +1.4
36,223 + -0.3
36,223 + +1.0
36,223 + -0.6
36,224 - -0.7
36,224 - +0.6
36,224 - -1.7
36,224 - -0.6
36,224 - -0.5
36,224 - -0.0
36,224 - -0.7
36,224 - -1.5
36,224 - -0.6
36,341 + -0.1
36,341 + +0.3
36,341 + -1.5
36,341 + -0.7
36,341 + +0.4
36,341 + +0.6
36,341 + -0.6
36,342 - +0.9
36,342 - -0.1
36,342 - -0.0
36,342 - -1.7

Or see this region's nucleotide sequence