Experiment: Chlorite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5079 and Pf1N1B4_5080 are separated by 148 nucleotides Pf1N1B4_5080 and Pf1N1B4_5081 are separated by 796 nucleotides
Pf1N1B4_5079 - Ferrichrome-iron receptor, at 5,625,230 to 5,627,326
_5079
Pf1N1B4_5080 - Ferrichrome-iron receptor, at 5,627,475 to 5,629,529
_5080
Pf1N1B4_5081 - Transcriptional activator RfaH, at 5,630,326 to 5,630,847
_5081
Position (kb) 5627
5628
5629
5630 Strain fitness (log2 ratio) -2
-1
0
1 at 5626.615 kb on + strand, within Pf1N1B4_5079 at 5626.662 kb on + strand, within Pf1N1B4_5079 at 5626.881 kb on + strand, within Pf1N1B4_5079 at 5626.881 kb on + strand, within Pf1N1B4_5079 at 5626.882 kb on - strand, within Pf1N1B4_5079 at 5626.928 kb on - strand, within Pf1N1B4_5079 at 5627.258 kb on + strand at 5627.259 kb on - strand at 5627.360 kb on - strand at 5627.360 kb on - strand at 5627.560 kb on + strand at 5627.657 kb on - strand at 5627.708 kb on - strand, within Pf1N1B4_5080 at 5627.868 kb on + strand, within Pf1N1B4_5080 at 5628.043 kb on + strand, within Pf1N1B4_5080 at 5628.062 kb on - strand, within Pf1N1B4_5080 at 5628.145 kb on + strand, within Pf1N1B4_5080 at 5628.146 kb on - strand, within Pf1N1B4_5080 at 5628.146 kb on - strand, within Pf1N1B4_5080 at 5628.172 kb on + strand, within Pf1N1B4_5080 at 5628.229 kb on + strand at 5628.230 kb on - strand, within Pf1N1B4_5080 at 5628.257 kb on - strand, within Pf1N1B4_5080 at 5628.409 kb on + strand, within Pf1N1B4_5080 at 5628.446 kb on + strand, within Pf1N1B4_5080 at 5628.838 kb on + strand, within Pf1N1B4_5080 at 5629.073 kb on - strand, within Pf1N1B4_5080 at 5629.283 kb on + strand, within Pf1N1B4_5080 at 5629.284 kb on - strand, within Pf1N1B4_5080 at 5629.284 kb on - strand, within Pf1N1B4_5080 at 5629.893 kb on + strand at 5629.895 kb on + strand at 5629.943 kb on + strand at 5630.224 kb on - strand at 5630.244 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 1 mM remove 5,626,615 + Pf1N1B4_5079 0.66 +0.1 5,626,662 + Pf1N1B4_5079 0.68 -0.5 5,626,881 + Pf1N1B4_5079 0.79 +0.0 5,626,881 + Pf1N1B4_5079 0.79 -0.4 5,626,882 - Pf1N1B4_5079 0.79 -0.1 5,626,928 - Pf1N1B4_5079 0.81 +0.5 5,627,258 + +1.3 5,627,259 - +0.9 5,627,360 - -2.4 5,627,360 - -0.9 5,627,560 + -0.0 5,627,657 - -0.3 5,627,708 - Pf1N1B4_5080 0.11 -0.3 5,627,868 + Pf1N1B4_5080 0.19 -0.0 5,628,043 + Pf1N1B4_5080 0.28 -1.1 5,628,062 - Pf1N1B4_5080 0.29 -1.0 5,628,145 + Pf1N1B4_5080 0.33 +0.0 5,628,146 - Pf1N1B4_5080 0.33 -2.1 5,628,146 - Pf1N1B4_5080 0.33 +0.5 5,628,172 + Pf1N1B4_5080 0.34 +0.0 5,628,229 + -0.5 5,628,230 - Pf1N1B4_5080 0.37 -0.9 5,628,257 - Pf1N1B4_5080 0.38 -0.4 5,628,409 + Pf1N1B4_5080 0.45 -0.2 5,628,446 + Pf1N1B4_5080 0.47 -0.6 5,628,838 + Pf1N1B4_5080 0.66 -0.2 5,629,073 - Pf1N1B4_5080 0.78 +0.8 5,629,283 + Pf1N1B4_5080 0.88 -0.3 5,629,284 - Pf1N1B4_5080 0.88 +1.2 5,629,284 - Pf1N1B4_5080 0.88 +0.0 5,629,893 + +0.9 5,629,895 + -1.3 5,629,943 + +1.0 5,630,224 - -2.4 5,630,244 + -1.9
Or see this region's nucleotide sequence