Experiment: Chlorite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5060 and Pf1N1B4_5061 overlap by 4 nucleotides Pf1N1B4_5061 and Pf1N1B4_5062 are separated by 259 nucleotides
Pf1N1B4_5060 - Ferrichrome-iron receptor, at 5,604,935 to 5,607,097
_5060
Pf1N1B4_5061 - Valyl-tRNA synthetase, at 5,607,094 to 5,607,402
_5061
Pf1N1B4_5062 - Homospermidine synthase (EC 2.5.1.44), at 5,607,662 to 5,609,086
_5062
Position (kb)
5607
5608 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 5606.180 kb on + strand, within Pf1N1B4_5060 at 5606.338 kb on + strand at 5606.425 kb on + strand, within Pf1N1B4_5060 at 5606.528 kb on + strand, within Pf1N1B4_5060 at 5606.611 kb on + strand at 5606.753 kb on + strand, within Pf1N1B4_5060 at 5606.753 kb on + strand, within Pf1N1B4_5060 at 5606.754 kb on - strand, within Pf1N1B4_5060 at 5606.909 kb on + strand at 5606.937 kb on - strand at 5607.026 kb on + strand at 5607.026 kb on + strand at 5607.026 kb on + strand at 5607.027 kb on - strand at 5607.027 kb on - strand at 5607.027 kb on - strand at 5607.134 kb on + strand, within Pf1N1B4_5061 at 5607.135 kb on - strand, within Pf1N1B4_5061 at 5607.147 kb on + strand, within Pf1N1B4_5061 at 5607.179 kb on + strand, within Pf1N1B4_5061 at 5607.179 kb on + strand, within Pf1N1B4_5061 at 5607.179 kb on + strand, within Pf1N1B4_5061 at 5607.180 kb on - strand, within Pf1N1B4_5061 at 5607.180 kb on - strand, within Pf1N1B4_5061 at 5607.876 kb on - strand, within Pf1N1B4_5062 at 5608.024 kb on + strand at 5608.025 kb on - strand, within Pf1N1B4_5062 at 5608.062 kb on - strand, within Pf1N1B4_5062 at 5608.062 kb on - strand, within Pf1N1B4_5062 at 5608.062 kb on - strand, within Pf1N1B4_5062
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 1 mM remove 5,606,180 + Pf1N1B4_5060 0.58 -2.9 5,606,338 + -1.1 5,606,425 + Pf1N1B4_5060 0.69 -0.5 5,606,528 + Pf1N1B4_5060 0.74 -0.5 5,606,611 + +0.9 5,606,753 + Pf1N1B4_5060 0.84 +0.0 5,606,753 + Pf1N1B4_5060 0.84 -1.7 5,606,754 - Pf1N1B4_5060 0.84 -2.4 5,606,909 + -0.9 5,606,937 - +0.7 5,607,026 + -2.1 5,607,026 + -0.2 5,607,026 + +0.5 5,607,027 - -2.5 5,607,027 - +0.9 5,607,027 - -0.5 5,607,134 + Pf1N1B4_5061 0.13 -0.2 5,607,135 - Pf1N1B4_5061 0.13 +0.7 5,607,147 + Pf1N1B4_5061 0.17 +0.1 5,607,179 + Pf1N1B4_5061 0.28 +0.8 5,607,179 + Pf1N1B4_5061 0.28 +0.1 5,607,179 + Pf1N1B4_5061 0.28 +1.9 5,607,180 - Pf1N1B4_5061 0.28 +0.5 5,607,180 - Pf1N1B4_5061 0.28 -0.9 5,607,876 - Pf1N1B4_5062 0.15 -1.7 5,608,024 + +1.0 5,608,025 - Pf1N1B4_5062 0.25 -0.5 5,608,062 - Pf1N1B4_5062 0.28 -0.4 5,608,062 - Pf1N1B4_5062 0.28 -0.5 5,608,062 - Pf1N1B4_5062 0.28 +1.9
Or see this region's nucleotide sequence