Experiment: Chlorite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4835 and Pf1N1B4_4836 are separated by 15 nucleotides Pf1N1B4_4836 and Pf1N1B4_4837 are separated by 27 nucleotides
Pf1N1B4_4835 - Carbon starvation protein A, at 5,340,087 to 5,342,144
_4835
Pf1N1B4_4836 - COG2879, Hypothetical small protein yjiX, at 5,342,160 to 5,342,357
_4836
Pf1N1B4_4837 - hypothetical protein, at 5,342,385 to 5,342,555
_4837
Position (kb)
5342
5343 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5341.920 kb on + strand, within Pf1N1B4_4835 at 5341.993 kb on - strand at 5341.993 kb on - strand at 5341.993 kb on - strand at 5342.001 kb on + strand at 5342.066 kb on + strand at 5342.066 kb on + strand at 5342.066 kb on + strand at 5342.066 kb on + strand at 5342.103 kb on - strand at 5342.191 kb on - strand at 5342.242 kb on - strand, within Pf1N1B4_4836 at 5342.242 kb on - strand, within Pf1N1B4_4836 at 5342.242 kb on - strand, within Pf1N1B4_4836 at 5342.252 kb on + strand, within Pf1N1B4_4836 at 5342.252 kb on + strand, within Pf1N1B4_4836 at 5342.253 kb on - strand, within Pf1N1B4_4836 at 5342.253 kb on - strand, within Pf1N1B4_4836 at 5342.369 kb on + strand at 5342.461 kb on - strand, within Pf1N1B4_4837 at 5342.461 kb on - strand, within Pf1N1B4_4837 at 5342.461 kb on - strand, within Pf1N1B4_4837 at 5342.536 kb on + strand, within Pf1N1B4_4837 at 5342.537 kb on - strand, within Pf1N1B4_4837 at 5342.537 kb on - strand, within Pf1N1B4_4837 at 5342.537 kb on - strand, within Pf1N1B4_4837 at 5342.611 kb on - strand at 5342.716 kb on - strand at 5342.716 kb on - strand at 5342.748 kb on - strand at 5342.789 kb on - strand at 5343.022 kb on - strand at 5343.022 kb on - strand at 5343.023 kb on + strand at 5343.335 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 1 mM remove 5,341,920 + Pf1N1B4_4835 0.89 +0.4 5,341,993 - -0.1 5,341,993 - +1.4 5,341,993 - -1.6 5,342,001 + +0.4 5,342,066 + -0.6 5,342,066 + -1.6 5,342,066 + -0.3 5,342,066 + +0.7 5,342,103 - -0.6 5,342,191 - -1.1 5,342,242 - Pf1N1B4_4836 0.41 -0.9 5,342,242 - Pf1N1B4_4836 0.41 -1.1 5,342,242 - Pf1N1B4_4836 0.41 -0.3 5,342,252 + Pf1N1B4_4836 0.46 -1.0 5,342,252 + Pf1N1B4_4836 0.46 +1.0 5,342,253 - Pf1N1B4_4836 0.47 +0.2 5,342,253 - Pf1N1B4_4836 0.47 +0.0 5,342,369 + +0.4 5,342,461 - Pf1N1B4_4837 0.44 +0.9 5,342,461 - Pf1N1B4_4837 0.44 +0.4 5,342,461 - Pf1N1B4_4837 0.44 +0.4 5,342,536 + Pf1N1B4_4837 0.88 +0.8 5,342,537 - Pf1N1B4_4837 0.89 +1.0 5,342,537 - Pf1N1B4_4837 0.89 +0.5 5,342,537 - Pf1N1B4_4837 0.89 -0.9 5,342,611 - -1.9 5,342,716 - -2.6 5,342,716 - -0.0 5,342,748 - -1.1 5,342,789 - -1.0 5,343,022 - +0.4 5,343,022 - -1.0 5,343,023 + -0.1 5,343,335 + +2.6
Or see this region's nucleotide sequence