Experiment: Chlorite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4697 and Pf1N1B4_4698 are separated by 1 nucleotides Pf1N1B4_4698 and Pf1N1B4_4699 are separated by 84 nucleotides
Pf1N1B4_4697 - Phenylacetate-coenzyme A ligase (EC 6.2.1.30), at 5,189,028 to 5,191,430
_4697
Pf1N1B4_4698 - rfbN protein, at 5,191,432 to 5,192,499
_4698
Pf1N1B4_4699 - Multidrug translocase MdfA, at 5,192,584 to 5,193,825
_4699
Position (kb) 5191
5192
5193 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5190.726 kb on + strand, within Pf1N1B4_4697 at 5190.727 kb on - strand, within Pf1N1B4_4697 at 5190.727 kb on - strand, within Pf1N1B4_4697 at 5190.734 kb on + strand, within Pf1N1B4_4697 at 5190.852 kb on + strand, within Pf1N1B4_4697 at 5190.852 kb on + strand, within Pf1N1B4_4697 at 5191.032 kb on - strand, within Pf1N1B4_4697 at 5191.155 kb on - strand, within Pf1N1B4_4697 at 5191.155 kb on - strand at 5191.243 kb on + strand at 5191.426 kb on + strand at 5191.426 kb on + strand at 5191.426 kb on + strand at 5191.426 kb on + strand at 5191.426 kb on + strand at 5191.430 kb on + strand at 5191.431 kb on - strand at 5191.691 kb on + strand, within Pf1N1B4_4698 at 5191.692 kb on - strand, within Pf1N1B4_4698 at 5191.728 kb on + strand, within Pf1N1B4_4698 at 5191.730 kb on + strand, within Pf1N1B4_4698 at 5191.731 kb on - strand at 5191.731 kb on - strand, within Pf1N1B4_4698 at 5191.731 kb on - strand, within Pf1N1B4_4698 at 5191.811 kb on + strand, within Pf1N1B4_4698 at 5192.082 kb on - strand, within Pf1N1B4_4698 at 5192.082 kb on - strand, within Pf1N1B4_4698 at 5192.105 kb on + strand, within Pf1N1B4_4698 at 5192.105 kb on + strand, within Pf1N1B4_4698 at 5192.106 kb on - strand, within Pf1N1B4_4698 at 5192.106 kb on - strand, within Pf1N1B4_4698 at 5192.157 kb on - strand, within Pf1N1B4_4698 at 5192.552 kb on - strand at 5192.573 kb on - strand at 5192.776 kb on - strand, within Pf1N1B4_4699 at 5192.844 kb on - strand, within Pf1N1B4_4699 at 5193.261 kb on - strand, within Pf1N1B4_4699
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 1 mM remove 5,190,726 + Pf1N1B4_4697 0.71 +0.6 5,190,727 - Pf1N1B4_4697 0.71 +0.3 5,190,727 - Pf1N1B4_4697 0.71 +2.5 5,190,734 + Pf1N1B4_4697 0.71 +0.3 5,190,852 + Pf1N1B4_4697 0.76 -0.0 5,190,852 + Pf1N1B4_4697 0.76 +0.2 5,191,032 - Pf1N1B4_4697 0.83 -1.3 5,191,155 - Pf1N1B4_4697 0.89 +0.9 5,191,155 - -0.1 5,191,243 + -0.5 5,191,426 + -2.3 5,191,426 + +0.6 5,191,426 + -0.9 5,191,426 + +0.9 5,191,426 + +3.3 5,191,430 + -0.9 5,191,431 - -0.5 5,191,691 + Pf1N1B4_4698 0.24 -0.1 5,191,692 - Pf1N1B4_4698 0.24 +0.2 5,191,728 + Pf1N1B4_4698 0.28 -2.1 5,191,730 + Pf1N1B4_4698 0.28 +0.7 5,191,731 - +0.5 5,191,731 - Pf1N1B4_4698 0.28 -0.5 5,191,731 - Pf1N1B4_4698 0.28 -1.7 5,191,811 + Pf1N1B4_4698 0.35 +1.0 5,192,082 - Pf1N1B4_4698 0.61 +0.1 5,192,082 - Pf1N1B4_4698 0.61 +1.2 5,192,105 + Pf1N1B4_4698 0.63 +0.5 5,192,105 + Pf1N1B4_4698 0.63 +0.5 5,192,106 - Pf1N1B4_4698 0.63 +0.3 5,192,106 - Pf1N1B4_4698 0.63 +1.5 5,192,157 - Pf1N1B4_4698 0.68 -0.3 5,192,552 - -0.9 5,192,573 - -2.3 5,192,776 - Pf1N1B4_4699 0.15 -0.4 5,192,844 - Pf1N1B4_4699 0.21 +0.1 5,193,261 - Pf1N1B4_4699 0.55 +0.5
Or see this region's nucleotide sequence