Experiment: Chlorite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4633 and Pf1N1B4_4634 are separated by 248 nucleotides Pf1N1B4_4634 and Pf1N1B4_4635 overlap by 4 nucleotides Pf1N1B4_4635 and Pf1N1B4_4636 overlap by 4 nucleotides
Pf1N1B4_4633 - Exonuclease SbcD, at 5,109,450 to 5,110,706
_4633
Pf1N1B4_4634 - BatD, at 5,110,955 to 5,112,604
_4634
Pf1N1B4_4635 - TPR domain protein in aerotolerance operon, at 5,112,601 to 5,112,732
_4635
Pf1N1B4_4636 - TPR domain protein in aerotolerance operon, at 5,112,729 to 5,114,336
_4636
Position (kb) 5110
5111
5112
5113 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5110.028 kb on - strand, within Pf1N1B4_4633 at 5110.222 kb on + strand, within Pf1N1B4_4633 at 5110.222 kb on + strand, within Pf1N1B4_4633 at 5110.223 kb on - strand, within Pf1N1B4_4633 at 5110.227 kb on - strand, within Pf1N1B4_4633 at 5110.699 kb on + strand at 5110.700 kb on - strand at 5110.714 kb on + strand at 5110.715 kb on - strand at 5110.764 kb on - strand at 5110.872 kb on + strand at 5110.957 kb on - strand at 5111.079 kb on + strand at 5112.036 kb on + strand, within Pf1N1B4_4634 at 5112.126 kb on + strand, within Pf1N1B4_4634 at 5112.127 kb on - strand at 5112.127 kb on - strand, within Pf1N1B4_4634 at 5112.254 kb on - strand, within Pf1N1B4_4634 at 5113.060 kb on + strand, within Pf1N1B4_4636 at 5113.117 kb on + strand, within Pf1N1B4_4636 at 5113.183 kb on + strand, within Pf1N1B4_4636 at 5113.309 kb on + strand, within Pf1N1B4_4636 at 5113.309 kb on + strand, within Pf1N1B4_4636
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 1 mM remove 5,110,028 - Pf1N1B4_4633 0.46 +1.1 5,110,222 + Pf1N1B4_4633 0.61 -2.1 5,110,222 + Pf1N1B4_4633 0.61 -0.5 5,110,223 - Pf1N1B4_4633 0.61 -0.8 5,110,227 - Pf1N1B4_4633 0.62 +1.2 5,110,699 + -3.0 5,110,700 - +1.5 5,110,714 + -0.7 5,110,715 - +0.5 5,110,764 - +0.1 5,110,872 + +1.1 5,110,957 - -1.1 5,111,079 + +0.0 5,112,036 + Pf1N1B4_4634 0.66 -1.1 5,112,126 + Pf1N1B4_4634 0.71 -2.1 5,112,127 - -0.8 5,112,127 - Pf1N1B4_4634 0.71 -1.1 5,112,254 - Pf1N1B4_4634 0.79 +0.5 5,113,060 + Pf1N1B4_4636 0.21 -0.8 5,113,117 + Pf1N1B4_4636 0.24 -1.4 5,113,183 + Pf1N1B4_4636 0.28 -0.5 5,113,309 + Pf1N1B4_4636 0.36 -2.1 5,113,309 + Pf1N1B4_4636 0.36 -1.1
Or see this region's nucleotide sequence