Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4516

Experiment: Chlorite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4515 and Pf1N1B4_4516 are separated by 0 nucleotidesPf1N1B4_4516 and Pf1N1B4_4517 are separated by 160 nucleotides Pf1N1B4_4515 - Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2), at 4,976,832 to 4,978,106 _4515 Pf1N1B4_4516 - Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism, at 4,978,107 to 4,979,474 _4516 Pf1N1B4_4517 - Dihydropyrimidinase (EC 3.5.2.2), at 4,979,635 to 4,981,074 _4517 Position (kb) 4978 4979 4980Strain fitness (log2 ratio) -3 -2 -1 0 1at 4977.107 kb on - strand, within Pf1N1B4_4515at 4977.122 kb on - strandat 4977.262 kb on - strand, within Pf1N1B4_4515at 4977.607 kb on + strandat 4977.607 kb on + strand, within Pf1N1B4_4515at 4977.608 kb on - strandat 4977.608 kb on - strand, within Pf1N1B4_4515at 4977.641 kb on - strand, within Pf1N1B4_4515at 4977.898 kb on - strand, within Pf1N1B4_4515at 4978.022 kb on - strandat 4978.108 kb on + strandat 4978.109 kb on - strandat 4978.109 kb on - strandat 4978.225 kb on + strandat 4978.512 kb on + strand, within Pf1N1B4_4516at 4978.512 kb on + strand, within Pf1N1B4_4516at 4978.512 kb on + strand, within Pf1N1B4_4516at 4978.512 kb on + strand, within Pf1N1B4_4516at 4978.513 kb on - strand, within Pf1N1B4_4516at 4978.702 kb on + strand, within Pf1N1B4_4516at 4978.703 kb on - strandat 4979.493 kb on - strandat 4979.658 kb on + strandat 4979.659 kb on - strandat 4979.659 kb on - strandat 4979.721 kb on - strandat 4980.296 kb on + strandat 4980.369 kb on - strand, within Pf1N1B4_4517

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 1 mM
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4,977,107 - Pf1N1B4_4515 0.22 -0.2
4,977,122 - -1.1
4,977,262 - Pf1N1B4_4515 0.34 -0.3
4,977,607 + -0.5
4,977,607 + Pf1N1B4_4515 0.61 +0.7
4,977,608 - +0.5
4,977,608 - Pf1N1B4_4515 0.61 +0.5
4,977,641 - Pf1N1B4_4515 0.63 +0.1
4,977,898 - Pf1N1B4_4515 0.84 -0.5
4,978,022 - +0.5
4,978,108 + -0.5
4,978,109 - -0.1
4,978,109 - -1.8
4,978,225 + -1.0
4,978,512 + Pf1N1B4_4516 0.30 -0.8
4,978,512 + Pf1N1B4_4516 0.30 -1.1
4,978,512 + Pf1N1B4_4516 0.30 +1.1
4,978,512 + Pf1N1B4_4516 0.30 -3.0
4,978,513 - Pf1N1B4_4516 0.30 -3.0
4,978,702 + Pf1N1B4_4516 0.43 -0.8
4,978,703 - +1.5
4,979,493 - +0.1
4,979,658 + -0.3
4,979,659 - -0.5
4,979,659 - -1.1
4,979,721 - +0.5
4,980,296 + -0.8
4,980,369 - Pf1N1B4_4517 0.51 +0.2

Or see this region's nucleotide sequence