Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4170

Experiment: Chlorite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4169 and Pf1N1B4_4170 are separated by 387 nucleotidesPf1N1B4_4170 and Pf1N1B4_4171 are separated by 145 nucleotides Pf1N1B4_4169 - Hydrolases of the alpha/beta superfamily, at 4,618,810 to 4,619,559 _4169 Pf1N1B4_4170 - putative oxidoreductase, at 4,619,947 to 4,620,765 _4170 Pf1N1B4_4171 - sensor histidine kinase, at 4,620,911 to 4,622,731 _4171 Position (kb) 4619 4620 4621Strain fitness (log2 ratio) -3 -2 -1 0 1at 4619.182 kb on - strand, within Pf1N1B4_4169at 4619.198 kb on + strand, within Pf1N1B4_4169at 4619.291 kb on + strandat 4619.291 kb on + strand, within Pf1N1B4_4169at 4619.291 kb on + strand, within Pf1N1B4_4169at 4619.291 kb on + strand, within Pf1N1B4_4169at 4619.291 kb on + strand, within Pf1N1B4_4169at 4619.291 kb on + strand, within Pf1N1B4_4169at 4619.480 kb on + strand, within Pf1N1B4_4169at 4619.480 kb on + strand, within Pf1N1B4_4169at 4619.480 kb on + strand, within Pf1N1B4_4169at 4619.480 kb on + strand, within Pf1N1B4_4169at 4619.480 kb on + strand, within Pf1N1B4_4169at 4619.480 kb on + strand, within Pf1N1B4_4169at 4619.528 kb on + strandat 4619.580 kb on + strandat 4619.581 kb on - strandat 4619.624 kb on + strandat 4619.829 kb on + strandat 4619.830 kb on - strandat 4619.905 kb on + strandat 4619.905 kb on + strandat 4620.008 kb on - strandat 4620.043 kb on + strand, within Pf1N1B4_4170at 4620.115 kb on + strand, within Pf1N1B4_4170at 4620.115 kb on + strand, within Pf1N1B4_4170at 4620.115 kb on + strand, within Pf1N1B4_4170at 4620.116 kb on - strand, within Pf1N1B4_4170at 4620.116 kb on - strand, within Pf1N1B4_4170at 4620.116 kb on - strand, within Pf1N1B4_4170at 4620.265 kb on - strand, within Pf1N1B4_4170at 4620.370 kb on + strand, within Pf1N1B4_4170at 4620.443 kb on - strand, within Pf1N1B4_4170at 4620.600 kb on + strand, within Pf1N1B4_4170at 4620.682 kb on + strand, within Pf1N1B4_4170at 4620.682 kb on + strand, within Pf1N1B4_4170at 4620.682 kb on + strand, within Pf1N1B4_4170at 4620.682 kb on + strand, within Pf1N1B4_4170at 4620.682 kb on + strand, within Pf1N1B4_4170at 4620.682 kb on + strand, within Pf1N1B4_4170at 4620.764 kb on - strandat 4620.912 kb on + strandat 4620.913 kb on - strandat 4621.148 kb on + strandat 4621.164 kb on - strandat 4621.199 kb on - strand, within Pf1N1B4_4171at 4621.234 kb on - strand, within Pf1N1B4_4171at 4621.234 kb on - strand, within Pf1N1B4_4171at 4621.234 kb on - strand, within Pf1N1B4_4171at 4621.234 kb on - strand, within Pf1N1B4_4171at 4621.426 kb on - strand, within Pf1N1B4_4171at 4621.426 kb on - strand, within Pf1N1B4_4171at 4621.543 kb on - strand, within Pf1N1B4_4171at 4621.645 kb on + strand, within Pf1N1B4_4171at 4621.671 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 1 mM
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4,619,182 - Pf1N1B4_4169 0.50 -1.2
4,619,198 + Pf1N1B4_4169 0.52 -0.6
4,619,291 + +1.2
4,619,291 + Pf1N1B4_4169 0.64 -3.0
4,619,291 + Pf1N1B4_4169 0.64 +0.6
4,619,291 + Pf1N1B4_4169 0.64 -0.8
4,619,291 + Pf1N1B4_4169 0.64 +0.2
4,619,291 + Pf1N1B4_4169 0.64 +0.8
4,619,480 + Pf1N1B4_4169 0.89 +1.1
4,619,480 + Pf1N1B4_4169 0.89 +0.6
4,619,480 + Pf1N1B4_4169 0.89 +1.4
4,619,480 + Pf1N1B4_4169 0.89 +1.5
4,619,480 + Pf1N1B4_4169 0.89 -2.2
4,619,480 + Pf1N1B4_4169 0.89 -0.2
4,619,528 + -0.1
4,619,580 + -0.4
4,619,581 - -0.4
4,619,624 + -1.8
4,619,829 + -0.6
4,619,830 - +0.6
4,619,905 + +0.9
4,619,905 + +0.3
4,620,008 - -1.1
4,620,043 + Pf1N1B4_4170 0.12 -1.0
4,620,115 + Pf1N1B4_4170 0.21 -1.4
4,620,115 + Pf1N1B4_4170 0.21 -0.4
4,620,115 + Pf1N1B4_4170 0.21 -1.4
4,620,116 - Pf1N1B4_4170 0.21 +0.4
4,620,116 - Pf1N1B4_4170 0.21 -1.8
4,620,116 - Pf1N1B4_4170 0.21 -2.2
4,620,265 - Pf1N1B4_4170 0.39 -0.4
4,620,370 + Pf1N1B4_4170 0.52 -2.4
4,620,443 - Pf1N1B4_4170 0.61 -1.0
4,620,600 + Pf1N1B4_4170 0.80 -1.4
4,620,682 + Pf1N1B4_4170 0.90 -2.0
4,620,682 + Pf1N1B4_4170 0.90 -0.1
4,620,682 + Pf1N1B4_4170 0.90 -2.1
4,620,682 + Pf1N1B4_4170 0.90 -0.2
4,620,682 + Pf1N1B4_4170 0.90 +0.4
4,620,682 + Pf1N1B4_4170 0.90 -2.6
4,620,764 - +0.5
4,620,912 + -0.8
4,620,913 - -1.0
4,621,148 + -0.4
4,621,164 - +0.6
4,621,199 - Pf1N1B4_4171 0.16 -0.8
4,621,234 - Pf1N1B4_4171 0.18 -1.6
4,621,234 - Pf1N1B4_4171 0.18 +0.5
4,621,234 - Pf1N1B4_4171 0.18 -1.4
4,621,234 - Pf1N1B4_4171 0.18 -1.2
4,621,426 - Pf1N1B4_4171 0.28 -2.7
4,621,426 - Pf1N1B4_4171 0.28 -1.4
4,621,543 - Pf1N1B4_4171 0.35 -0.4
4,621,645 + Pf1N1B4_4171 0.40 -0.7
4,621,671 - +1.2

Or see this region's nucleotide sequence