Experiment: Chlorite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_3692 and Pf1N1B4_3693 are separated by 145 nucleotides Pf1N1B4_3693 and Pf1N1B4_3694 are separated by 61 nucleotides Pf1N1B4_3694 and Pf1N1B4_3695 are separated by 286 nucleotides
Pf1N1B4_3692 - Chaperone protein HtpG, at 4,100,696 to 4,102,606
_3692
Pf1N1B4_3693 - Pirin, at 4,102,752 to 4,103,639
_3693
Pf1N1B4_3694 - FIG00964480: hypothetical protein, at 4,103,701 to 4,104,117
_3694
Pf1N1B4_3695 - Helicase subunit of the DNA excision repair complex, at 4,104,404 to 4,104,868
_3695
Position (kb)
4102
4103
4104 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4101.830 kb on + strand, within Pf1N1B4_3692 at 4102.011 kb on - strand, within Pf1N1B4_3692 at 4102.011 kb on - strand, within Pf1N1B4_3692 at 4102.011 kb on - strand, within Pf1N1B4_3692 at 4102.013 kb on + strand, within Pf1N1B4_3692 at 4102.563 kb on - strand at 4102.587 kb on + strand at 4102.754 kb on - strand at 4103.047 kb on + strand at 4103.047 kb on + strand, within Pf1N1B4_3693 at 4103.047 kb on + strand, within Pf1N1B4_3693 at 4103.048 kb on - strand, within Pf1N1B4_3693 at 4103.048 kb on - strand, within Pf1N1B4_3693 at 4103.048 kb on - strand, within Pf1N1B4_3693 at 4103.048 kb on - strand, within Pf1N1B4_3693 at 4103.048 kb on - strand, within Pf1N1B4_3693 at 4103.116 kb on + strand, within Pf1N1B4_3693 at 4103.117 kb on - strand, within Pf1N1B4_3693 at 4103.117 kb on - strand, within Pf1N1B4_3693 at 4103.182 kb on - strand, within Pf1N1B4_3693 at 4103.182 kb on - strand, within Pf1N1B4_3693 at 4103.236 kb on + strand, within Pf1N1B4_3693 at 4103.236 kb on + strand, within Pf1N1B4_3693 at 4103.236 kb on + strand, within Pf1N1B4_3693 at 4103.237 kb on - strand, within Pf1N1B4_3693 at 4103.301 kb on - strand, within Pf1N1B4_3693 at 4103.444 kb on - strand, within Pf1N1B4_3693 at 4103.444 kb on - strand, within Pf1N1B4_3693 at 4103.444 kb on - strand, within Pf1N1B4_3693 at 4103.858 kb on + strand, within Pf1N1B4_3694 at 4103.859 kb on - strand, within Pf1N1B4_3694 at 4103.939 kb on + strand, within Pf1N1B4_3694 at 4104.117 kb on + strand at 4104.172 kb on + strand at 4104.172 kb on + strand at 4104.173 kb on - strand at 4104.173 kb on - strand at 4104.174 kb on + strand at 4104.175 kb on - strand at 4104.175 kb on - strand at 4104.224 kb on + strand at 4104.241 kb on - strand at 4104.371 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 1 mM remove 4,101,830 + Pf1N1B4_3692 0.59 -0.8 4,102,011 - Pf1N1B4_3692 0.69 +1.8 4,102,011 - Pf1N1B4_3692 0.69 +0.4 4,102,011 - Pf1N1B4_3692 0.69 -2.1 4,102,013 + Pf1N1B4_3692 0.69 +0.2 4,102,563 - -0.2 4,102,587 + +2.8 4,102,754 - -0.8 4,103,047 + -1.8 4,103,047 + Pf1N1B4_3693 0.33 +1.3 4,103,047 + Pf1N1B4_3693 0.33 +0.5 4,103,048 - Pf1N1B4_3693 0.33 +2.0 4,103,048 - Pf1N1B4_3693 0.33 -0.0 4,103,048 - Pf1N1B4_3693 0.33 +0.5 4,103,048 - Pf1N1B4_3693 0.33 -1.5 4,103,048 - Pf1N1B4_3693 0.33 -0.5 4,103,116 + Pf1N1B4_3693 0.41 +0.8 4,103,117 - Pf1N1B4_3693 0.41 +1.7 4,103,117 - Pf1N1B4_3693 0.41 +0.2 4,103,182 - Pf1N1B4_3693 0.48 +0.6 4,103,182 - Pf1N1B4_3693 0.48 +0.4 4,103,236 + Pf1N1B4_3693 0.55 +1.0 4,103,236 + Pf1N1B4_3693 0.55 +0.8 4,103,236 + Pf1N1B4_3693 0.55 +0.4 4,103,237 - Pf1N1B4_3693 0.55 +1.2 4,103,301 - Pf1N1B4_3693 0.62 -0.3 4,103,444 - Pf1N1B4_3693 0.78 -1.2 4,103,444 - Pf1N1B4_3693 0.78 +0.1 4,103,444 - Pf1N1B4_3693 0.78 +0.6 4,103,858 + Pf1N1B4_3694 0.38 -1.5 4,103,859 - Pf1N1B4_3694 0.38 -0.8 4,103,939 + Pf1N1B4_3694 0.57 +2.0 4,104,117 + -0.8 4,104,172 + -0.8 4,104,172 + -0.1 4,104,173 - +0.4 4,104,173 - +0.4 4,104,174 + -1.1 4,104,175 - +0.8 4,104,175 - -0.5 4,104,224 + -1.2 4,104,241 - -0.3 4,104,371 - -0.8
Or see this region's nucleotide sequence