Experiment: Chlorite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_3431 and Pf1N1B4_3432 are separated by 90 nucleotides Pf1N1B4_3432 and Pf1N1B4_3433 overlap by 4 nucleotides Pf1N1B4_3433 and Pf1N1B4_3434 are separated by 1 nucleotides
Pf1N1B4_3431 - ABC transporter for L-Arginine and L-Citrulline, periplasmic substrate-binding component (from data) , at 3,824,839 to 3,825,612
_3431
Pf1N1B4_3432 - ABC transporter for L-Arginine and L-Citrulline, permease component 1 (from data) , at 3,825,703 to 3,826,392
_3432
Pf1N1B4_3433 - ABC transporter for L-Arginine and L-Citrulline, permease component 2 (from data) , at 3,826,389 to 3,827,087
_3433
Pf1N1B4_3434 - Succinylglutamate desuccinylase/aspartoacylase, at 3,827,089 to 3,828,201
_3434
Position (kb)
3825
3826
3827 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3824.747 kb on + strand at 3824.747 kb on + strand at 3824.748 kb on - strand at 3824.748 kb on - strand at 3824.748 kb on - strand at 3824.786 kb on - strand at 3824.990 kb on - strand, within Pf1N1B4_3431 at 3824.990 kb on - strand, within Pf1N1B4_3431 at 3824.990 kb on - strand, within Pf1N1B4_3431 at 3825.157 kb on + strand, within Pf1N1B4_3431 at 3825.157 kb on + strand, within Pf1N1B4_3431 at 3825.157 kb on + strand, within Pf1N1B4_3431 at 3825.157 kb on + strand, within Pf1N1B4_3431 at 3825.158 kb on - strand, within Pf1N1B4_3431 at 3825.158 kb on - strand, within Pf1N1B4_3431 at 3825.158 kb on - strand at 3825.158 kb on - strand at 3825.160 kb on + strand, within Pf1N1B4_3431 at 3825.160 kb on + strand, within Pf1N1B4_3431 at 3825.160 kb on + strand, within Pf1N1B4_3431 at 3825.160 kb on + strand, within Pf1N1B4_3431 at 3825.160 kb on + strand, within Pf1N1B4_3431 at 3825.160 kb on + strand, within Pf1N1B4_3431 at 3825.160 kb on + strand, within Pf1N1B4_3431 at 3825.160 kb on + strand, within Pf1N1B4_3431 at 3825.160 kb on + strand, within Pf1N1B4_3431 at 3825.161 kb on - strand, within Pf1N1B4_3431 at 3825.161 kb on - strand, within Pf1N1B4_3431 at 3825.161 kb on - strand, within Pf1N1B4_3431 at 3825.161 kb on - strand, within Pf1N1B4_3431 at 3825.161 kb on - strand, within Pf1N1B4_3431 at 3825.161 kb on - strand, within Pf1N1B4_3431 at 3825.161 kb on - strand, within Pf1N1B4_3431 at 3825.161 kb on - strand at 3825.161 kb on - strand, within Pf1N1B4_3431 at 3825.161 kb on - strand, within Pf1N1B4_3431 at 3825.316 kb on + strand, within Pf1N1B4_3431 at 3825.317 kb on - strand, within Pf1N1B4_3431 at 3825.337 kb on + strand, within Pf1N1B4_3431 at 3825.338 kb on - strand, within Pf1N1B4_3431 at 3825.466 kb on + strand, within Pf1N1B4_3431 at 3825.466 kb on + strand, within Pf1N1B4_3431 at 3825.466 kb on + strand, within Pf1N1B4_3431 at 3825.466 kb on + strand, within Pf1N1B4_3431 at 3825.562 kb on + strand at 3825.562 kb on + strand at 3825.562 kb on + strand at 3825.562 kb on + strand at 3825.562 kb on + strand at 3825.562 kb on + strand at 3825.562 kb on + strand at 3825.563 kb on - strand at 3825.563 kb on - strand at 3825.563 kb on - strand at 3825.563 kb on - strand at 3825.563 kb on - strand at 3825.563 kb on - strand at 3825.583 kb on + strand at 3825.583 kb on + strand at 3825.583 kb on + strand at 3825.584 kb on - strand at 3825.584 kb on - strand at 3825.584 kb on - strand at 3825.584 kb on - strand at 3825.584 kb on - strand at 3825.601 kb on + strand at 3825.601 kb on + strand at 3825.601 kb on + strand at 3825.601 kb on + strand at 3825.601 kb on + strand at 3825.602 kb on - strand at 3825.610 kb on + strand at 3825.610 kb on + strand at 3825.610 kb on + strand at 3825.610 kb on + strand at 3825.610 kb on + strand at 3825.610 kb on + strand at 3825.611 kb on - strand at 3825.611 kb on - strand at 3825.611 kb on - strand at 3825.611 kb on - strand at 3825.611 kb on - strand at 3825.611 kb on - strand at 3825.611 kb on - strand at 3825.740 kb on + strand at 3825.856 kb on + strand, within Pf1N1B4_3432 at 3825.856 kb on + strand, within Pf1N1B4_3432 at 3825.857 kb on - strand, within Pf1N1B4_3432 at 3825.857 kb on - strand, within Pf1N1B4_3432 at 3825.857 kb on - strand, within Pf1N1B4_3432 at 3825.857 kb on - strand, within Pf1N1B4_3432 at 3825.910 kb on + strand, within Pf1N1B4_3432 at 3825.964 kb on + strand, within Pf1N1B4_3432 at 3825.964 kb on + strand, within Pf1N1B4_3432 at 3825.964 kb on + strand, within Pf1N1B4_3432 at 3825.964 kb on + strand, within Pf1N1B4_3432 at 3825.965 kb on - strand, within Pf1N1B4_3432 at 3825.965 kb on - strand, within Pf1N1B4_3432 at 3825.965 kb on - strand, within Pf1N1B4_3432 at 3825.965 kb on - strand, within Pf1N1B4_3432 at 3825.965 kb on - strand, within Pf1N1B4_3432 at 3825.965 kb on - strand, within Pf1N1B4_3432 at 3825.965 kb on - strand, within Pf1N1B4_3432 at 3825.965 kb on - strand, within Pf1N1B4_3432 at 3825.965 kb on - strand, within Pf1N1B4_3432 at 3825.965 kb on - strand, within Pf1N1B4_3432 at 3825.965 kb on - strand, within Pf1N1B4_3432 at 3825.965 kb on - strand, within Pf1N1B4_3432 at 3825.965 kb on - strand, within Pf1N1B4_3432 at 3826.024 kb on + strand, within Pf1N1B4_3432 at 3826.024 kb on + strand, within Pf1N1B4_3432 at 3826.024 kb on + strand, within Pf1N1B4_3432 at 3826.024 kb on + strand, within Pf1N1B4_3432 at 3826.025 kb on - strand, within Pf1N1B4_3432 at 3826.025 kb on - strand, within Pf1N1B4_3432 at 3826.025 kb on - strand, within Pf1N1B4_3432 at 3826.025 kb on - strand, within Pf1N1B4_3432 at 3826.306 kb on + strand, within Pf1N1B4_3432 at 3826.306 kb on + strand, within Pf1N1B4_3432 at 3826.307 kb on - strand, within Pf1N1B4_3432 at 3826.307 kb on - strand, within Pf1N1B4_3432 at 3826.307 kb on - strand, within Pf1N1B4_3432 at 3826.374 kb on - strand at 3826.388 kb on + strand at 3826.388 kb on + strand at 3826.388 kb on + strand at 3826.388 kb on + strand at 3826.388 kb on + strand at 3826.388 kb on + strand at 3826.388 kb on + strand at 3826.388 kb on + strand at 3826.388 kb on + strand at 3826.388 kb on + strand at 3826.388 kb on + strand at 3826.388 kb on + strand at 3826.388 kb on + strand at 3826.389 kb on - strand at 3826.389 kb on - strand at 3826.389 kb on - strand at 3826.389 kb on - strand at 3826.389 kb on - strand at 3826.401 kb on + strand at 3826.401 kb on + strand at 3826.401 kb on + strand at 3826.402 kb on - strand at 3826.402 kb on - strand at 3826.402 kb on - strand at 3826.402 kb on - strand at 3826.566 kb on + strand, within Pf1N1B4_3433 at 3826.566 kb on + strand, within Pf1N1B4_3433 at 3826.566 kb on + strand, within Pf1N1B4_3433 at 3826.567 kb on - strand, within Pf1N1B4_3433 at 3826.567 kb on - strand, within Pf1N1B4_3433 at 3826.567 kb on - strand, within Pf1N1B4_3433 at 3826.611 kb on + strand, within Pf1N1B4_3433 at 3826.611 kb on + strand, within Pf1N1B4_3433 at 3826.612 kb on - strand at 3826.719 kb on + strand, within Pf1N1B4_3433 at 3826.719 kb on + strand, within Pf1N1B4_3433 at 3826.719 kb on + strand, within Pf1N1B4_3433 at 3826.719 kb on + strand, within Pf1N1B4_3433 at 3826.720 kb on - strand, within Pf1N1B4_3433 at 3826.720 kb on - strand, within Pf1N1B4_3433 at 3826.812 kb on + strand, within Pf1N1B4_3433 at 3826.813 kb on - strand, within Pf1N1B4_3433 at 3826.813 kb on - strand, within Pf1N1B4_3433 at 3826.813 kb on - strand, within Pf1N1B4_3433 at 3826.813 kb on - strand, within Pf1N1B4_3433 at 3826.861 kb on - strand, within Pf1N1B4_3433 at 3826.861 kb on - strand, within Pf1N1B4_3433 at 3826.861 kb on - strand, within Pf1N1B4_3433 at 3826.861 kb on - strand, within Pf1N1B4_3433 at 3826.962 kb on + strand, within Pf1N1B4_3433 at 3826.962 kb on + strand, within Pf1N1B4_3433 at 3826.962 kb on + strand, within Pf1N1B4_3433 at 3826.962 kb on + strand, within Pf1N1B4_3433 at 3826.963 kb on - strand, within Pf1N1B4_3433 at 3826.963 kb on - strand, within Pf1N1B4_3433 at 3826.963 kb on - strand, within Pf1N1B4_3433 at 3826.963 kb on - strand, within Pf1N1B4_3433 at 3826.963 kb on - strand, within Pf1N1B4_3433 at 3826.963 kb on - strand, within Pf1N1B4_3433 at 3826.963 kb on - strand, within Pf1N1B4_3433 at 3826.980 kb on + strand, within Pf1N1B4_3433 at 3826.980 kb on + strand, within Pf1N1B4_3433 at 3826.980 kb on + strand, within Pf1N1B4_3433 at 3826.980 kb on + strand, within Pf1N1B4_3433 at 3826.980 kb on + strand, within Pf1N1B4_3433 at 3826.980 kb on + strand, within Pf1N1B4_3433 at 3826.981 kb on - strand, within Pf1N1B4_3433 at 3826.981 kb on - strand, within Pf1N1B4_3433 at 3826.981 kb on - strand, within Pf1N1B4_3433 at 3827.001 kb on + strand, within Pf1N1B4_3433 at 3827.001 kb on + strand, within Pf1N1B4_3433 at 3827.001 kb on + strand, within Pf1N1B4_3433 at 3827.001 kb on + strand, within Pf1N1B4_3433 at 3827.001 kb on + strand, within Pf1N1B4_3433 at 3827.002 kb on - strand, within Pf1N1B4_3433 at 3827.002 kb on - strand, within Pf1N1B4_3433 at 3827.002 kb on - strand, within Pf1N1B4_3433 at 3827.002 kb on - strand, within Pf1N1B4_3433 at 3827.002 kb on - strand, within Pf1N1B4_3433 at 3827.089 kb on - strand at 3827.089 kb on - strand at 3827.182 kb on + strand at 3827.182 kb on + strand at 3827.182 kb on + strand at 3827.182 kb on + strand at 3827.183 kb on - strand at 3827.183 kb on - strand at 3827.183 kb on - strand at 3827.183 kb on - strand at 3827.183 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 1 mM remove 3,824,747 + -0.1 3,824,747 + +1.2 3,824,748 - -0.2 3,824,748 - +0.5 3,824,748 - -0.4 3,824,786 - -0.5 3,824,990 - Pf1N1B4_3431 0.20 -2.4 3,824,990 - Pf1N1B4_3431 0.20 -0.4 3,824,990 - Pf1N1B4_3431 0.20 -0.1 3,825,157 + Pf1N1B4_3431 0.41 +0.5 3,825,157 + Pf1N1B4_3431 0.41 +0.9 3,825,157 + Pf1N1B4_3431 0.41 +0.3 3,825,157 + Pf1N1B4_3431 0.41 +0.9 3,825,158 - Pf1N1B4_3431 0.41 -0.7 3,825,158 - Pf1N1B4_3431 0.41 +0.3 3,825,158 - -0.7 3,825,158 - +1.9 3,825,160 + Pf1N1B4_3431 0.41 +0.0 3,825,160 + Pf1N1B4_3431 0.41 -0.3 3,825,160 + Pf1N1B4_3431 0.41 -0.7 3,825,160 + Pf1N1B4_3431 0.41 -1.4 3,825,160 + Pf1N1B4_3431 0.41 -0.6 3,825,160 + Pf1N1B4_3431 0.41 +1.4 3,825,160 + Pf1N1B4_3431 0.41 -0.1 3,825,160 + Pf1N1B4_3431 0.41 -0.2 3,825,160 + Pf1N1B4_3431 0.41 -0.5 3,825,161 - Pf1N1B4_3431 0.42 -0.5 3,825,161 - Pf1N1B4_3431 0.42 -0.5 3,825,161 - Pf1N1B4_3431 0.42 -0.7 3,825,161 - Pf1N1B4_3431 0.42 +0.3 3,825,161 - Pf1N1B4_3431 0.42 -1.7 3,825,161 - Pf1N1B4_3431 0.42 -1.1 3,825,161 - Pf1N1B4_3431 0.42 +0.7 3,825,161 - +0.9 3,825,161 - Pf1N1B4_3431 0.42 -0.9 3,825,161 - Pf1N1B4_3431 0.42 +0.2 3,825,316 + Pf1N1B4_3431 0.62 +0.1 3,825,317 - Pf1N1B4_3431 0.62 -0.0 3,825,337 + Pf1N1B4_3431 0.64 -1.4 3,825,338 - Pf1N1B4_3431 0.64 -0.5 3,825,466 + Pf1N1B4_3431 0.81 +1.2 3,825,466 + Pf1N1B4_3431 0.81 -0.7 3,825,466 + Pf1N1B4_3431 0.81 -0.4 3,825,466 + Pf1N1B4_3431 0.81 -0.3 3,825,562 + +0.2 3,825,562 + -1.1 3,825,562 + -1.4 3,825,562 + +0.9 3,825,562 + -0.1 3,825,562 + +0.6 3,825,562 + +0.7 3,825,563 - -0.1 3,825,563 - -0.1 3,825,563 - -1.4 3,825,563 - +1.8 3,825,563 - +0.1 3,825,563 - +0.9 3,825,583 + -1.9 3,825,583 + -1.7 3,825,583 + +0.7 3,825,584 - -0.2 3,825,584 - +1.7 3,825,584 - -1.1 3,825,584 - -1.9 3,825,584 - -1.1 3,825,601 + +1.2 3,825,601 + +0.2 3,825,601 + -1.1 3,825,601 + +1.7 3,825,601 + -1.5 3,825,602 - +0.2 3,825,610 + -0.7 3,825,610 + +0.9 3,825,610 + -2.1 3,825,610 + -0.5 3,825,610 + -0.2 3,825,610 + +0.5 3,825,611 - +1.5 3,825,611 - +0.6 3,825,611 - -0.4 3,825,611 - +1.7 3,825,611 - -0.1 3,825,611 - +0.9 3,825,611 - -0.1 3,825,740 + -0.2 3,825,856 + Pf1N1B4_3432 0.22 -1.7 3,825,856 + Pf1N1B4_3432 0.22 +1.4 3,825,857 - Pf1N1B4_3432 0.22 -0.2 3,825,857 - Pf1N1B4_3432 0.22 +1.9 3,825,857 - Pf1N1B4_3432 0.22 +0.6 3,825,857 - Pf1N1B4_3432 0.22 -1.1 3,825,910 + Pf1N1B4_3432 0.30 +0.9 3,825,964 + Pf1N1B4_3432 0.38 +0.1 3,825,964 + Pf1N1B4_3432 0.38 +0.3 3,825,964 + Pf1N1B4_3432 0.38 -0.4 3,825,964 + Pf1N1B4_3432 0.38 -0.2 3,825,965 - Pf1N1B4_3432 0.38 +1.1 3,825,965 - Pf1N1B4_3432 0.38 +0.9 3,825,965 - Pf1N1B4_3432 0.38 -0.1 3,825,965 - Pf1N1B4_3432 0.38 -0.6 3,825,965 - Pf1N1B4_3432 0.38 +0.3 3,825,965 - Pf1N1B4_3432 0.38 +0.1 3,825,965 - Pf1N1B4_3432 0.38 -0.0 3,825,965 - Pf1N1B4_3432 0.38 +0.2 3,825,965 - Pf1N1B4_3432 0.38 +2.1 3,825,965 - Pf1N1B4_3432 0.38 +0.7 3,825,965 - Pf1N1B4_3432 0.38 +0.0 3,825,965 - Pf1N1B4_3432 0.38 +0.0 3,825,965 - Pf1N1B4_3432 0.38 +0.4 3,826,024 + Pf1N1B4_3432 0.47 -1.1 3,826,024 + Pf1N1B4_3432 0.47 -0.0 3,826,024 + Pf1N1B4_3432 0.47 -0.1 3,826,024 + Pf1N1B4_3432 0.47 +0.9 3,826,025 - Pf1N1B4_3432 0.47 -1.9 3,826,025 - Pf1N1B4_3432 0.47 -0.1 3,826,025 - Pf1N1B4_3432 0.47 -0.1 3,826,025 - Pf1N1B4_3432 0.47 -1.3 3,826,306 + Pf1N1B4_3432 0.87 +0.6 3,826,306 + Pf1N1B4_3432 0.87 +0.2 3,826,307 - Pf1N1B4_3432 0.88 -0.5 3,826,307 - Pf1N1B4_3432 0.88 +1.9 3,826,307 - Pf1N1B4_3432 0.88 +0.6 3,826,374 - -0.4 3,826,388 + -0.7 3,826,388 + -0.2 3,826,388 + +0.3 3,826,388 + -0.7 3,826,388 + +1.4 3,826,388 + +0.3 3,826,388 + +0.6 3,826,388 + +0.4 3,826,388 + +0.1 3,826,388 + -0.7 3,826,388 + +1.9 3,826,388 + -0.7 3,826,388 + +0.9 3,826,389 - -0.3 3,826,389 - +0.3 3,826,389 - -0.3 3,826,389 - +0.4 3,826,389 - +0.5 3,826,401 + -0.9 3,826,401 + +0.2 3,826,401 + +1.1 3,826,402 - -0.7 3,826,402 - +1.4 3,826,402 - +0.0 3,826,402 - +0.1 3,826,566 + Pf1N1B4_3433 0.25 +1.6 3,826,566 + Pf1N1B4_3433 0.25 +0.5 3,826,566 + Pf1N1B4_3433 0.25 +1.8 3,826,567 - Pf1N1B4_3433 0.25 +0.0 3,826,567 - Pf1N1B4_3433 0.25 -0.9 3,826,567 - Pf1N1B4_3433 0.25 -2.7 3,826,611 + Pf1N1B4_3433 0.32 +0.1 3,826,611 + Pf1N1B4_3433 0.32 -0.6 3,826,612 - -0.1 3,826,719 + Pf1N1B4_3433 0.47 +0.6 3,826,719 + Pf1N1B4_3433 0.47 -0.6 3,826,719 + Pf1N1B4_3433 0.47 +0.5 3,826,719 + Pf1N1B4_3433 0.47 -2.1 3,826,720 - Pf1N1B4_3433 0.47 +0.9 3,826,720 - Pf1N1B4_3433 0.47 -0.4 3,826,812 + Pf1N1B4_3433 0.61 -1.6 3,826,813 - Pf1N1B4_3433 0.61 +2.2 3,826,813 - Pf1N1B4_3433 0.61 -1.3 3,826,813 - Pf1N1B4_3433 0.61 +0.9 3,826,813 - Pf1N1B4_3433 0.61 -1.0 3,826,861 - Pf1N1B4_3433 0.68 +0.3 3,826,861 - Pf1N1B4_3433 0.68 -0.1 3,826,861 - Pf1N1B4_3433 0.68 +0.2 3,826,861 - Pf1N1B4_3433 0.68 -1.9 3,826,962 + Pf1N1B4_3433 0.82 -1.7 3,826,962 + Pf1N1B4_3433 0.82 +0.4 3,826,962 + Pf1N1B4_3433 0.82 -1.1 3,826,962 + Pf1N1B4_3433 0.82 -0.3 3,826,963 - Pf1N1B4_3433 0.82 +0.1 3,826,963 - Pf1N1B4_3433 0.82 -0.4 3,826,963 - Pf1N1B4_3433 0.82 -1.3 3,826,963 - Pf1N1B4_3433 0.82 -0.6 3,826,963 - Pf1N1B4_3433 0.82 -0.2 3,826,963 - Pf1N1B4_3433 0.82 -0.1 3,826,963 - Pf1N1B4_3433 0.82 -0.1 3,826,980 + Pf1N1B4_3433 0.85 +0.3 3,826,980 + Pf1N1B4_3433 0.85 +0.5 3,826,980 + Pf1N1B4_3433 0.85 -0.5 3,826,980 + Pf1N1B4_3433 0.85 +0.5 3,826,980 + Pf1N1B4_3433 0.85 -0.9 3,826,980 + Pf1N1B4_3433 0.85 +0.6 3,826,981 - Pf1N1B4_3433 0.85 -0.3 3,826,981 - Pf1N1B4_3433 0.85 -0.8 3,826,981 - Pf1N1B4_3433 0.85 -0.7 3,827,001 + Pf1N1B4_3433 0.88 -0.3 3,827,001 + Pf1N1B4_3433 0.88 -1.7 3,827,001 + Pf1N1B4_3433 0.88 -1.3 3,827,001 + Pf1N1B4_3433 0.88 +0.9 3,827,001 + Pf1N1B4_3433 0.88 -0.1 3,827,002 - Pf1N1B4_3433 0.88 +1.3 3,827,002 - Pf1N1B4_3433 0.88 -1.1 3,827,002 - Pf1N1B4_3433 0.88 +0.4 3,827,002 - Pf1N1B4_3433 0.88 -0.1 3,827,002 - Pf1N1B4_3433 0.88 -0.3 3,827,089 - -0.4 3,827,089 - -1.2 3,827,182 + -2.3 3,827,182 + +0.6 3,827,182 + -0.1 3,827,182 + -0.7 3,827,183 - -0.2 3,827,183 - +1.6 3,827,183 - +0.1 3,827,183 - -0.4 3,827,183 - +1.2
Or see this region's nucleotide sequence