Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3135

Experiment: Chlorite 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Chlorite 1 mM
3,518,461	+		Pf1N1B4_3133	0.72	-0.4
3,518,461	+		Pf1N1B4_3133	0.72	+0.3
3,518,541	+		Pf1N1B4_3133	0.79	+0.7
3,518,548	-		Pf1N1B4_3133	0.79	-0.3
3,518,627	-		Pf1N1B4_3133	0.86	+0.0
3,518,685	+				+0.0
3,518,716	+				+0.5
3,518,717	-				-0.5
3,518,717	-				-1.8
3,518,792	+				-1.8
3,518,824	+				-1.2
3,518,824	+				-1.0
3,518,824	+				+0.0
3,518,824	+				+1.6
3,518,824	+				+0.4
3,518,825	-				-0.8
3,518,825	-				+0.0
3,519,000	+		Pf1N1B4_3134	0.42	-0.5
3,519,000	+		Pf1N1B4_3134	0.42	+0.7
3,519,000	+		Pf1N1B4_3134	0.42	+1.5
3,519,326	+				+0.3
3,519,326	+				+0.0
3,519,326	+				+0.5
3,519,326	+				+0.0
3,519,327	-				-0.2
3,519,414	+				-0.3
3,519,415	-				+1.2
3,519,436	+				-0.9
3,519,436	+				+1.0
3,519,436	+				-0.7
3,519,437	-				-1.0
3,519,577	+		Pf1N1B4_3135	0.13	-1.2
3,519,578	-				-1.3
3,519,684	+		Pf1N1B4_3135	0.24	+1.3
3,519,685	-		Pf1N1B4_3135	0.24	-0.9
3,519,685	-		Pf1N1B4_3135	0.24	-2.5
3,519,733	+		Pf1N1B4_3135	0.28	+1.0
3,519,840	+		Pf1N1B4_3135	0.39	+0.9
3,519,840	+		Pf1N1B4_3135	0.39	+1.0
3,519,843	+		Pf1N1B4_3135	0.39	+1.0
3,519,843	+		Pf1N1B4_3135	0.39	+0.4
3,519,844	-		Pf1N1B4_3135	0.39	+0.0
3,519,942	+		Pf1N1B4_3135	0.49	-0.1
3,519,942	+		Pf1N1B4_3135	0.49	+0.3
3,519,942	+		Pf1N1B4_3135	0.49	-0.6
3,519,943	-		Pf1N1B4_3135	0.49	+2.4
3,520,376	+				-0.2
3,520,376	+				+0.0
3,520,376	+				+0.0
3,520,376	+				+0.0
3,520,379	+				-1.8
3,520,379	+				-0.6
3,520,379	+				-0.3
3,520,379	+				-1.6
3,520,379	+				+2.0
3,520,379	+				-1.6
3,520,379	+				-0.3
3,520,379	+				-2.2
3,520,379	+				+0.3
3,520,379	+				-1.0
3,520,380	-				-0.2
3,520,380	-				+0.9
3,520,380	-				+0.2
3,520,414	+				-0.4
3,520,415	-				-1.8
3,520,415	-				-0.7
3,520,418	+				-1.4
3,520,418	+				-0.2
3,520,418	+				-1.8
3,520,419	-				-1.3
3,520,419	-				+0.0
3,520,484	+				-1.2
3,520,484	+				-0.6
3,520,484	+				+0.1
3,520,491	+				-1.0
3,520,491	+				-2.2
3,520,494	+				-1.9
3,520,495	-				+0.6
3,520,497	+				-2.0
3,520,501	+				+1.7
3,520,501	+				-1.0
3,520,623	+		Pf1N1B4_3136	0.13	+1.6
3,520,627	+		Pf1N1B4_3136	0.14	+0.0
3,520,627	+				+0.4
3,520,627	+		Pf1N1B4_3136	0.14	-0.8
3,520,709	+		Pf1N1B4_3136	0.30	+0.4
3,520,709	+		Pf1N1B4_3136	0.30	+1.0
3,520,710	-		Pf1N1B4_3136	0.31	-1.0
3,520,743	+				+1.0
3,520,773	+		Pf1N1B4_3136	0.43	+1.0
3,520,773	+		Pf1N1B4_3136	0.43	-2.0
3,520,774	-		Pf1N1B4_3136	0.43	-1.8
3,520,774	-		Pf1N1B4_3136	0.43	-2.9
3,520,774	-		Pf1N1B4_3136	0.43	-0.6
3,520,774	-		Pf1N1B4_3136	0.43	-1.0
3,520,776	+		Pf1N1B4_3136	0.44	-1.0
3,520,776	+		Pf1N1B4_3136	0.44	-1.2
3,520,776	+		Pf1N1B4_3136	0.44	+0.7
3,520,776	+		Pf1N1B4_3136	0.44	+0.4
3,520,776	+		Pf1N1B4_3136	0.44	+0.4
3,520,776	+		Pf1N1B4_3136	0.44	-1.3
3,520,776	+		Pf1N1B4_3136	0.44	-1.6
3,520,776	+		Pf1N1B4_3136	0.44	-0.6
3,520,777	-		Pf1N1B4_3136	0.44	-1.3
3,520,777	-		Pf1N1B4_3136	0.44	-0.2
3,520,777	-		Pf1N1B4_3136	0.44	-0.2
3,520,777	-		Pf1N1B4_3136	0.44	+1.0
3,520,777	-				-1.3
3,520,777	-		Pf1N1B4_3136	0.44	+0.2
3,520,777	-		Pf1N1B4_3136	0.44	+0.0
3,520,902	+		Pf1N1B4_3136	0.69	-0.2
3,520,902	+		Pf1N1B4_3136	0.69	-0.1
3,520,902	+		Pf1N1B4_3136	0.69	+0.0
3,520,902	+		Pf1N1B4_3136	0.69	-0.3
3,520,966	-		Pf1N1B4_3136	0.82	+0.5
3,520,967	+				+0.4
3,520,967	+		Pf1N1B4_3136	0.82	+0.6
3,520,968	-		Pf1N1B4_3136	0.82	-0.3
3,520,968	-		Pf1N1B4_3136	0.82	-2.3
3,521,053	+				-3.2
3,521,053	+				+0.2
3,521,055	+				-0.2
3,521,056	-				-1.6
3,521,069	+				+0.0
3,521,070	-				+0.7
3,521,072	+				-1.0
3,521,072	+				-3.0
3,521,073	-				+2.6
3,521,073	-				+0.7
3,521,075	+				+0.0
3,521,075	+				-0.3
3,521,075	+				-1.6
3,521,075	+				-0.6
3,521,075	+				+0.0
3,521,076	-				-1.1
3,521,076	-				-0.3
3,521,123	+				-0.3
3,521,137	+				-0.3
3,521,138	-				-1.6
3,521,138	-				+0.0
3,521,139	+				-0.9
3,521,139	+				+0.5
3,521,140	-				-1.8
3,521,140	-				+0.0
3,521,150	-				+0.8
3,521,157	+				-1.3
3,521,426	+		Pf1N1B4_3137	0.32	-2.1
3,521,427	-				-0.6