Experiment: Chlorite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_258 and Pf1N1B4_259 overlap by 4 nucleotides Pf1N1B4_259 and Pf1N1B4_260 are separated by 187 nucleotides Pf1N1B4_260 and Pf1N1B4_261 are separated by 226 nucleotides
Pf1N1B4_258 - Organic hydroperoxide resistance transcriptional regulator, at 318,825 to 319,286
_258
Pf1N1B4_259 - Glutathione peroxidase family protein, at 319,283 to 319,768
_259
Pf1N1B4_260 - Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12), at 319,956 to 320,351
_260
Pf1N1B4_261 - Aspartate aminotransferase (EC 2.6.1.1), at 320,578 to 321,789
_261
Position (kb) 319
320
321 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 319.157 kb on - strand, within Pf1N1B4_258 at 319.191 kb on - strand, within Pf1N1B4_258 at 319.191 kb on - strand, within Pf1N1B4_258 at 319.191 kb on - strand, within Pf1N1B4_258 at 319.191 kb on - strand, within Pf1N1B4_258 at 319.191 kb on - strand, within Pf1N1B4_258 at 319.191 kb on - strand, within Pf1N1B4_258 at 319.191 kb on - strand, within Pf1N1B4_258 at 319.191 kb on - strand, within Pf1N1B4_258 at 319.191 kb on - strand, within Pf1N1B4_258 at 319.191 kb on - strand, within Pf1N1B4_258 at 319.199 kb on - strand, within Pf1N1B4_258 at 319.199 kb on - strand, within Pf1N1B4_258 at 319.199 kb on - strand, within Pf1N1B4_258 at 319.199 kb on - strand, within Pf1N1B4_258 at 319.229 kb on - strand, within Pf1N1B4_258 at 319.229 kb on - strand, within Pf1N1B4_258 at 319.229 kb on - strand, within Pf1N1B4_258 at 319.229 kb on - strand, within Pf1N1B4_258 at 319.229 kb on - strand, within Pf1N1B4_258 at 319.280 kb on + strand at 319.281 kb on - strand at 319.281 kb on - strand at 319.281 kb on - strand at 319.281 kb on - strand at 319.281 kb on - strand at 319.281 kb on - strand at 319.281 kb on - strand at 319.509 kb on + strand, within Pf1N1B4_259 at 319.611 kb on + strand, within Pf1N1B4_259 at 319.611 kb on + strand, within Pf1N1B4_259 at 319.611 kb on + strand, within Pf1N1B4_259 at 319.612 kb on - strand, within Pf1N1B4_259 at 319.641 kb on + strand, within Pf1N1B4_259 at 319.664 kb on - strand, within Pf1N1B4_259 at 319.857 kb on + strand at 319.857 kb on + strand at 319.958 kb on - strand at 319.958 kb on - strand at 319.999 kb on + strand, within Pf1N1B4_260 at 320.000 kb on - strand, within Pf1N1B4_260 at 320.140 kb on + strand, within Pf1N1B4_260 at 320.141 kb on - strand, within Pf1N1B4_260 at 320.141 kb on - strand, within Pf1N1B4_260 at 320.245 kb on + strand, within Pf1N1B4_260 at 320.245 kb on + strand at 320.245 kb on + strand, within Pf1N1B4_260 at 320.293 kb on + strand, within Pf1N1B4_260 at 320.294 kb on - strand, within Pf1N1B4_260 at 320.294 kb on - strand, within Pf1N1B4_260 at 320.355 kb on + strand at 320.355 kb on + strand at 320.355 kb on + strand at 320.356 kb on - strand at 320.356 kb on - strand at 320.356 kb on - strand at 320.356 kb on - strand at 320.386 kb on + strand at 320.413 kb on + strand at 320.413 kb on + strand at 320.413 kb on + strand at 320.413 kb on + strand at 320.413 kb on + strand at 320.414 kb on - strand at 320.414 kb on - strand at 320.414 kb on - strand at 320.414 kb on - strand at 320.414 kb on - strand at 320.414 kb on - strand at 320.414 kb on - strand at 320.414 kb on - strand at 320.414 kb on - strand at 320.414 kb on - strand at 320.473 kb on + strand at 320.473 kb on + strand at 320.473 kb on + strand at 320.473 kb on + strand at 320.474 kb on - strand at 320.474 kb on - strand at 320.474 kb on - strand at 320.528 kb on - strand at 320.528 kb on - strand at 320.528 kb on - strand at 320.539 kb on + strand at 320.540 kb on - strand at 320.540 kb on - strand at 320.540 kb on - strand at 320.540 kb on - strand at 320.617 kb on + strand at 320.618 kb on - strand at 320.777 kb on - strand, within Pf1N1B4_261 at 320.824 kb on + strand, within Pf1N1B4_261 at 320.824 kb on + strand, within Pf1N1B4_261 at 320.824 kb on + strand, within Pf1N1B4_261 at 320.825 kb on - strand, within Pf1N1B4_261 at 320.825 kb on - strand, within Pf1N1B4_261 at 320.827 kb on + strand, within Pf1N1B4_261 at 320.827 kb on + strand, within Pf1N1B4_261 at 320.828 kb on - strand, within Pf1N1B4_261 at 320.828 kb on - strand, within Pf1N1B4_261 at 320.828 kb on - strand, within Pf1N1B4_261 at 320.828 kb on - strand, within Pf1N1B4_261 at 320.869 kb on + strand, within Pf1N1B4_261 at 320.869 kb on + strand, within Pf1N1B4_261 at 320.869 kb on + strand, within Pf1N1B4_261 at 320.869 kb on + strand, within Pf1N1B4_261 at 320.869 kb on + strand, within Pf1N1B4_261 at 320.869 kb on + strand, within Pf1N1B4_261 at 320.870 kb on - strand, within Pf1N1B4_261 at 320.870 kb on - strand, within Pf1N1B4_261 at 320.870 kb on - strand, within Pf1N1B4_261 at 320.870 kb on - strand, within Pf1N1B4_261 at 320.870 kb on - strand at 320.870 kb on - strand, within Pf1N1B4_261 at 320.870 kb on - strand, within Pf1N1B4_261 at 320.870 kb on - strand, within Pf1N1B4_261 at 321.010 kb on + strand, within Pf1N1B4_261 at 321.010 kb on + strand, within Pf1N1B4_261 at 321.010 kb on + strand at 321.011 kb on - strand, within Pf1N1B4_261 at 321.093 kb on + strand, within Pf1N1B4_261 at 321.127 kb on + strand, within Pf1N1B4_261 at 321.202 kb on + strand, within Pf1N1B4_261 at 321.202 kb on + strand at 321.202 kb on + strand, within Pf1N1B4_261 at 321.217 kb on + strand, within Pf1N1B4_261 at 321.217 kb on + strand, within Pf1N1B4_261 at 321.217 kb on + strand, within Pf1N1B4_261 at 321.218 kb on - strand, within Pf1N1B4_261 at 321.230 kb on + strand, within Pf1N1B4_261
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 1 mM remove 319,157 - Pf1N1B4_258 0.72 +2.1 319,191 - Pf1N1B4_258 0.79 -1.8 319,191 - Pf1N1B4_258 0.79 +1.6 319,191 - Pf1N1B4_258 0.79 +0.2 319,191 - Pf1N1B4_258 0.79 -1.8 319,191 - Pf1N1B4_258 0.79 +3.4 319,191 - Pf1N1B4_258 0.79 -1.0 319,191 - Pf1N1B4_258 0.79 -0.2 319,191 - Pf1N1B4_258 0.79 +2.8 319,191 - Pf1N1B4_258 0.79 +0.8 319,191 - Pf1N1B4_258 0.79 -1.1 319,199 - Pf1N1B4_258 0.81 +0.8 319,199 - Pf1N1B4_258 0.81 +0.4 319,199 - Pf1N1B4_258 0.81 +1.2 319,199 - Pf1N1B4_258 0.81 -1.4 319,229 - Pf1N1B4_258 0.87 -2.8 319,229 - Pf1N1B4_258 0.87 -0.2 319,229 - Pf1N1B4_258 0.87 -0.8 319,229 - Pf1N1B4_258 0.87 -1.6 319,229 - Pf1N1B4_258 0.87 -0.9 319,280 + -0.2 319,281 - +0.7 319,281 - +1.0 319,281 - +1.4 319,281 - +2.6 319,281 - -0.7 319,281 - -1.4 319,281 - -1.8 319,509 + Pf1N1B4_259 0.47 -0.0 319,611 + Pf1N1B4_259 0.67 +1.4 319,611 + Pf1N1B4_259 0.67 +2.1 319,611 + Pf1N1B4_259 0.67 +1.5 319,612 - Pf1N1B4_259 0.68 +1.4 319,641 + Pf1N1B4_259 0.74 +1.1 319,664 - Pf1N1B4_259 0.78 +0.2 319,857 + -0.4 319,857 + -0.3 319,958 - +0.2 319,958 - +0.6 319,999 + Pf1N1B4_260 0.11 -0.3 320,000 - Pf1N1B4_260 0.11 +0.2 320,140 + Pf1N1B4_260 0.46 -0.2 320,141 - Pf1N1B4_260 0.47 -2.8 320,141 - Pf1N1B4_260 0.47 -1.0 320,245 + Pf1N1B4_260 0.73 -2.1 320,245 + -0.2 320,245 + Pf1N1B4_260 0.73 -0.8 320,293 + Pf1N1B4_260 0.85 -2.6 320,294 - Pf1N1B4_260 0.85 -1.2 320,294 - Pf1N1B4_260 0.85 +0.8 320,355 + -0.9 320,355 + -0.3 320,355 + -1.5 320,356 - -0.2 320,356 - +0.8 320,356 - -0.8 320,356 - +0.2 320,386 + -0.2 320,413 + +1.2 320,413 + -1.2 320,413 + -0.2 320,413 + -0.5 320,413 + -2.5 320,414 - +0.2 320,414 - -1.5 320,414 - +0.8 320,414 - -0.6 320,414 - -0.4 320,414 - -0.5 320,414 - +0.2 320,414 - -0.6 320,414 - -0.8 320,414 - +1.0 320,473 + -1.8 320,473 + -0.2 320,473 + +0.6 320,473 + -2.6 320,474 - +0.4 320,474 - -0.6 320,474 - -1.2 320,528 - -0.1 320,528 - -2.2 320,528 - +0.2 320,539 + +0.8 320,540 - -0.6 320,540 - -0.8 320,540 - -1.0 320,540 - +0.8 320,617 + +0.5 320,618 - -0.8 320,777 - Pf1N1B4_261 0.16 -1.0 320,824 + Pf1N1B4_261 0.20 -0.2 320,824 + Pf1N1B4_261 0.20 -0.2 320,824 + Pf1N1B4_261 0.20 -2.8 320,825 - Pf1N1B4_261 0.20 -0.2 320,825 - Pf1N1B4_261 0.20 -1.2 320,827 + Pf1N1B4_261 0.21 -1.0 320,827 + Pf1N1B4_261 0.21 +0.6 320,828 - Pf1N1B4_261 0.21 -0.2 320,828 - Pf1N1B4_261 0.21 +1.6 320,828 - Pf1N1B4_261 0.21 -0.6 320,828 - Pf1N1B4_261 0.21 -0.6 320,869 + Pf1N1B4_261 0.24 +0.6 320,869 + Pf1N1B4_261 0.24 +1.1 320,869 + Pf1N1B4_261 0.24 +0.8 320,869 + Pf1N1B4_261 0.24 -0.1 320,869 + Pf1N1B4_261 0.24 -2.0 320,869 + Pf1N1B4_261 0.24 +1.4 320,870 - Pf1N1B4_261 0.24 +0.3 320,870 - Pf1N1B4_261 0.24 +1.1 320,870 - Pf1N1B4_261 0.24 -1.8 320,870 - Pf1N1B4_261 0.24 -0.2 320,870 - -0.8 320,870 - Pf1N1B4_261 0.24 -0.3 320,870 - Pf1N1B4_261 0.24 +0.4 320,870 - Pf1N1B4_261 0.24 -0.4 321,010 + Pf1N1B4_261 0.36 +0.8 321,010 + Pf1N1B4_261 0.36 +1.6 321,010 + +0.8 321,011 - Pf1N1B4_261 0.36 +0.8 321,093 + Pf1N1B4_261 0.42 -0.6 321,127 + Pf1N1B4_261 0.45 -0.4 321,202 + Pf1N1B4_261 0.51 -0.5 321,202 + +0.8 321,202 + Pf1N1B4_261 0.51 -1.8 321,217 + Pf1N1B4_261 0.53 +0.3 321,217 + Pf1N1B4_261 0.53 +0.5 321,217 + Pf1N1B4_261 0.53 +0.1 321,218 - Pf1N1B4_261 0.53 +0.0 321,230 + Pf1N1B4_261 0.54 +0.2
Or see this region's nucleotide sequence