Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1668

Experiment: Chlorite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1666 and Pf1N1B4_1667 are separated by 40 nucleotidesPf1N1B4_1667 and Pf1N1B4_1668 are separated by 117 nucleotidesPf1N1B4_1668 and Pf1N1B4_1669 overlap by 4 nucleotidesPf1N1B4_1669 and Pf1N1B4_1670 are separated by 88 nucleotides Pf1N1B4_1666 - C4-dicarboxylate transport transcriptional regulatory protein, at 1,910,422 to 1,911,816 _1666 Pf1N1B4_1667 - Histone acetyltransferase HPA2 and related acetyltransferases, at 1,911,857 to 1,912,315 _1667 Pf1N1B4_1668 - 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7), at 1,912,433 to 1,913,266 _1668 Pf1N1B4_1669 - ADP compounds hydrolase NudE (EC 3.6.1.-), at 1,913,263 to 1,913,829 _1669 Pf1N1B4_1670 - FIG001957: putative hydrolase, at 1,913,918 to 1,914,580 _1670 Position (kb) 1912 1913 1914Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1911.515 kb on + strand, within Pf1N1B4_1666at 1911.515 kb on + strand, within Pf1N1B4_1666at 1911.515 kb on + strand, within Pf1N1B4_1666at 1911.516 kb on - strand, within Pf1N1B4_1666at 1911.819 kb on + strandat 1911.825 kb on - strandat 1912.022 kb on + strand, within Pf1N1B4_1667at 1912.023 kb on - strand, within Pf1N1B4_1667at 1912.023 kb on - strand, within Pf1N1B4_1667at 1912.208 kb on + strand, within Pf1N1B4_1667at 1912.208 kb on + strand, within Pf1N1B4_1667at 1912.208 kb on + strand, within Pf1N1B4_1667at 1912.208 kb on + strand, within Pf1N1B4_1667at 1912.208 kb on + strand, within Pf1N1B4_1667at 1912.209 kb on - strandat 1912.209 kb on - strand, within Pf1N1B4_1667at 1912.298 kb on + strandat 1912.298 kb on + strandat 1912.298 kb on + strandat 1912.298 kb on + strandat 1912.298 kb on + strandat 1912.298 kb on + strandat 1912.298 kb on + strandat 1912.298 kb on + strandat 1912.298 kb on + strandat 1912.298 kb on + strandat 1912.298 kb on + strandat 1912.298 kb on + strandat 1912.298 kb on + strandat 1912.299 kb on - strandat 1912.299 kb on - strandat 1912.299 kb on - strandat 1912.422 kb on - strandat 1912.422 kb on - strandat 1912.422 kb on - strandat 1912.731 kb on - strand, within Pf1N1B4_1668at 1912.837 kb on + strand, within Pf1N1B4_1668at 1912.838 kb on - strand, within Pf1N1B4_1668at 1912.875 kb on + strand, within Pf1N1B4_1668at 1912.875 kb on + strand, within Pf1N1B4_1668at 1912.876 kb on - strand, within Pf1N1B4_1668at 1912.876 kb on - strand, within Pf1N1B4_1668at 1912.972 kb on + strand, within Pf1N1B4_1668at 1912.972 kb on + strand, within Pf1N1B4_1668at 1912.972 kb on + strand, within Pf1N1B4_1668at 1912.972 kb on + strand, within Pf1N1B4_1668at 1912.972 kb on + strand, within Pf1N1B4_1668at 1912.973 kb on - strand, within Pf1N1B4_1668at 1912.973 kb on - strand, within Pf1N1B4_1668at 1912.973 kb on - strand, within Pf1N1B4_1668at 1912.973 kb on - strand, within Pf1N1B4_1668at 1912.973 kb on - strand, within Pf1N1B4_1668at 1913.293 kb on + strandat 1913.293 kb on + strandat 1913.293 kb on + strandat 1913.293 kb on + strandat 1913.293 kb on + strandat 1913.293 kb on + strandat 1913.294 kb on - strandat 1913.309 kb on + strandat 1913.309 kb on + strandat 1913.309 kb on + strandat 1913.309 kb on + strandat 1913.309 kb on + strandat 1913.310 kb on - strandat 1913.432 kb on + strand, within Pf1N1B4_1669at 1913.432 kb on + strand, within Pf1N1B4_1669at 1913.433 kb on - strand, within Pf1N1B4_1669at 1913.474 kb on + strand, within Pf1N1B4_1669at 1913.474 kb on + strand, within Pf1N1B4_1669at 1913.475 kb on - strand, within Pf1N1B4_1669at 1913.475 kb on - strand, within Pf1N1B4_1669at 1913.475 kb on - strand, within Pf1N1B4_1669at 1913.612 kb on + strand, within Pf1N1B4_1669at 1913.612 kb on + strand, within Pf1N1B4_1669at 1913.612 kb on + strand, within Pf1N1B4_1669at 1913.612 kb on + strand, within Pf1N1B4_1669at 1913.612 kb on + strand, within Pf1N1B4_1669at 1913.612 kb on + strand, within Pf1N1B4_1669at 1913.612 kb on + strand, within Pf1N1B4_1669at 1913.613 kb on - strand, within Pf1N1B4_1669at 1913.613 kb on - strand, within Pf1N1B4_1669at 1913.633 kb on + strand, within Pf1N1B4_1669at 1913.633 kb on + strandat 1913.723 kb on + strand, within Pf1N1B4_1669at 1913.723 kb on + strand, within Pf1N1B4_1669at 1913.723 kb on + strand, within Pf1N1B4_1669at 1913.723 kb on + strand, within Pf1N1B4_1669at 1913.723 kb on + strand, within Pf1N1B4_1669at 1913.723 kb on + strand, within Pf1N1B4_1669at 1913.723 kb on + strand, within Pf1N1B4_1669at 1913.723 kb on + strand, within Pf1N1B4_1669at 1913.723 kb on + strand, within Pf1N1B4_1669at 1913.724 kb on - strand, within Pf1N1B4_1669at 1913.724 kb on - strand, within Pf1N1B4_1669at 1913.724 kb on - strand, within Pf1N1B4_1669at 1913.724 kb on - strand, within Pf1N1B4_1669at 1913.727 kb on + strand, within Pf1N1B4_1669at 1913.727 kb on + strand, within Pf1N1B4_1669at 1913.727 kb on + strand, within Pf1N1B4_1669at 1913.727 kb on + strand, within Pf1N1B4_1669at 1913.727 kb on + strand, within Pf1N1B4_1669at 1913.728 kb on - strand, within Pf1N1B4_1669at 1913.728 kb on - strand, within Pf1N1B4_1669at 1913.728 kb on - strand, within Pf1N1B4_1669at 1913.809 kb on + strandat 1913.809 kb on + strandat 1913.855 kb on + strandat 1913.856 kb on - strandat 1913.856 kb on - strandat 1913.858 kb on + strandat 1913.858 kb on + strandat 1913.858 kb on + strandat 1913.858 kb on + strandat 1913.858 kb on + strandat 1913.859 kb on - strandat 1913.859 kb on - strandat 1913.859 kb on - strandat 1913.859 kb on - strandat 1913.859 kb on - strandat 1913.859 kb on - strandat 1913.859 kb on - strandat 1913.900 kb on + strandat 1913.917 kb on + strandat 1913.917 kb on + strandat 1913.917 kb on + strandat 1913.917 kb on + strandat 1913.917 kb on + strandat 1913.917 kb on + strandat 1913.917 kb on + strandat 1913.917 kb on + strandat 1913.918 kb on - strandat 1913.918 kb on - strandat 1913.918 kb on - strandat 1913.918 kb on - strandat 1913.918 kb on - strandat 1913.918 kb on - strandat 1913.990 kb on + strand, within Pf1N1B4_1670at 1913.991 kb on - strand, within Pf1N1B4_1670at 1913.991 kb on - strand, within Pf1N1B4_1670at 1914.075 kb on + strand, within Pf1N1B4_1670at 1914.076 kb on - strand, within Pf1N1B4_1670at 1914.117 kb on - strand, within Pf1N1B4_1670at 1914.117 kb on - strand, within Pf1N1B4_1670at 1914.117 kb on - strand, within Pf1N1B4_1670at 1914.117 kb on - strand, within Pf1N1B4_1670at 1914.252 kb on + strand, within Pf1N1B4_1670at 1914.252 kb on + strand, within Pf1N1B4_1670at 1914.253 kb on - strand, within Pf1N1B4_1670

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 1 mM
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1,911,515 + Pf1N1B4_1666 0.78 -0.2
1,911,515 + Pf1N1B4_1666 0.78 -0.4
1,911,515 + Pf1N1B4_1666 0.78 -0.4
1,911,516 - Pf1N1B4_1666 0.78 +1.4
1,911,819 + +0.7
1,911,825 - -0.2
1,912,022 + Pf1N1B4_1667 0.36 -0.1
1,912,023 - Pf1N1B4_1667 0.36 -0.4
1,912,023 - Pf1N1B4_1667 0.36 +0.4
1,912,208 + Pf1N1B4_1667 0.76 -0.2
1,912,208 + Pf1N1B4_1667 0.76 -1.4
1,912,208 + Pf1N1B4_1667 0.76 -0.9
1,912,208 + Pf1N1B4_1667 0.76 +0.8
1,912,208 + Pf1N1B4_1667 0.76 -0.6
1,912,209 - +1.4
1,912,209 - Pf1N1B4_1667 0.77 -0.4
1,912,298 + -0.0
1,912,298 + -0.3
1,912,298 + +1.0
1,912,298 + -2.0
1,912,298 + -0.6
1,912,298 + -0.2
1,912,298 + -1.9
1,912,298 + -0.5
1,912,298 + +0.4
1,912,298 + +2.4
1,912,298 + -0.2
1,912,298 + +0.3
1,912,298 + -0.9
1,912,299 - -0.6
1,912,299 - -0.2
1,912,299 - -0.4
1,912,422 - +1.0
1,912,422 - +1.0
1,912,422 - -1.9
1,912,731 - Pf1N1B4_1668 0.36 +2.4
1,912,837 + Pf1N1B4_1668 0.48 -1.2
1,912,838 - Pf1N1B4_1668 0.49 -0.6
1,912,875 + Pf1N1B4_1668 0.53 -2.0
1,912,875 + Pf1N1B4_1668 0.53 -0.6
1,912,876 - Pf1N1B4_1668 0.53 -1.7
1,912,876 - Pf1N1B4_1668 0.53 -2.7
1,912,972 + Pf1N1B4_1668 0.65 -1.8
1,912,972 + Pf1N1B4_1668 0.65 -0.5
1,912,972 + Pf1N1B4_1668 0.65 +1.4
1,912,972 + Pf1N1B4_1668 0.65 +1.4
1,912,972 + Pf1N1B4_1668 0.65 -0.2
1,912,973 - Pf1N1B4_1668 0.65 -1.4
1,912,973 - Pf1N1B4_1668 0.65 -0.6
1,912,973 - Pf1N1B4_1668 0.65 +0.2
1,912,973 - Pf1N1B4_1668 0.65 -1.0
1,912,973 - Pf1N1B4_1668 0.65 -0.9
1,913,293 + +1.2
1,913,293 + -0.5
1,913,293 + +2.3
1,913,293 + -1.2
1,913,293 + +1.4
1,913,293 + -1.1
1,913,294 - -0.8
1,913,309 + -0.2
1,913,309 + -0.8
1,913,309 + +1.0
1,913,309 + -0.6
1,913,309 + -1.0
1,913,310 - -0.1
1,913,432 + Pf1N1B4_1669 0.30 +0.7
1,913,432 + Pf1N1B4_1669 0.30 +0.2
1,913,433 - Pf1N1B4_1669 0.30 -1.8
1,913,474 + Pf1N1B4_1669 0.37 -0.0
1,913,474 + Pf1N1B4_1669 0.37 +0.4
1,913,475 - Pf1N1B4_1669 0.37 -0.3
1,913,475 - Pf1N1B4_1669 0.37 -0.4
1,913,475 - Pf1N1B4_1669 0.37 -0.9
1,913,612 + Pf1N1B4_1669 0.62 +1.0
1,913,612 + Pf1N1B4_1669 0.62 -0.0
1,913,612 + Pf1N1B4_1669 0.62 -1.4
1,913,612 + Pf1N1B4_1669 0.62 +1.4
1,913,612 + Pf1N1B4_1669 0.62 -1.3
1,913,612 + Pf1N1B4_1669 0.62 +1.2
1,913,612 + Pf1N1B4_1669 0.62 -0.4
1,913,613 - Pf1N1B4_1669 0.62 +0.9
1,913,613 - Pf1N1B4_1669 0.62 +1.0
1,913,633 + Pf1N1B4_1669 0.65 +0.2
1,913,633 + +1.4
1,913,723 + Pf1N1B4_1669 0.81 -0.0
1,913,723 + Pf1N1B4_1669 0.81 +0.4
1,913,723 + Pf1N1B4_1669 0.81 -0.7
1,913,723 + Pf1N1B4_1669 0.81 -0.5
1,913,723 + Pf1N1B4_1669 0.81 +0.2
1,913,723 + Pf1N1B4_1669 0.81 -0.0
1,913,723 + Pf1N1B4_1669 0.81 -1.6
1,913,723 + Pf1N1B4_1669 0.81 -0.7
1,913,723 + Pf1N1B4_1669 0.81 +0.9
1,913,724 - Pf1N1B4_1669 0.81 +0.1
1,913,724 - Pf1N1B4_1669 0.81 -0.3
1,913,724 - Pf1N1B4_1669 0.81 -0.0
1,913,724 - Pf1N1B4_1669 0.81 +0.1
1,913,727 + Pf1N1B4_1669 0.82 -0.6
1,913,727 + Pf1N1B4_1669 0.82 -1.0
1,913,727 + Pf1N1B4_1669 0.82 +0.4
1,913,727 + Pf1N1B4_1669 0.82 +0.5
1,913,727 + Pf1N1B4_1669 0.82 -0.5
1,913,728 - Pf1N1B4_1669 0.82 -0.1
1,913,728 - Pf1N1B4_1669 0.82 +0.3
1,913,728 - Pf1N1B4_1669 0.82 -0.9
1,913,809 + -0.7
1,913,809 + +0.5
1,913,855 + -1.3
1,913,856 - -0.6
1,913,856 - +0.7
1,913,858 + -2.1
1,913,858 + +0.1
1,913,858 + +0.1
1,913,858 + -1.1
1,913,858 + +0.4
1,913,859 - -0.1
1,913,859 - -0.1
1,913,859 - -1.4
1,913,859 - -0.1
1,913,859 - +1.2
1,913,859 - +1.0
1,913,859 - +1.1
1,913,900 + +0.1
1,913,917 + -1.4
1,913,917 + -1.4
1,913,917 + -0.6
1,913,917 + -1.1
1,913,917 + -0.1
1,913,917 + -2.0
1,913,917 + -1.7
1,913,917 + +1.4
1,913,918 - +1.4
1,913,918 - -0.9
1,913,918 - +0.7
1,913,918 - -0.6
1,913,918 - -0.6
1,913,918 - +0.4
1,913,990 + Pf1N1B4_1670 0.11 +3.2
1,913,991 - Pf1N1B4_1670 0.11 +0.4
1,913,991 - Pf1N1B4_1670 0.11 +0.2
1,914,075 + Pf1N1B4_1670 0.24 -1.4
1,914,076 - Pf1N1B4_1670 0.24 -0.6
1,914,117 - Pf1N1B4_1670 0.30 -1.6
1,914,117 - Pf1N1B4_1670 0.30 -2.0
1,914,117 - Pf1N1B4_1670 0.30 -1.9
1,914,117 - Pf1N1B4_1670 0.30 +0.9
1,914,252 + Pf1N1B4_1670 0.50 -1.1
1,914,252 + Pf1N1B4_1670 0.50 -1.1
1,914,253 - Pf1N1B4_1670 0.51 +0.1

Or see this region's nucleotide sequence