Experiment: Chlorite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_161 and Pf1N1B4_162 are separated by 177 nucleotides Pf1N1B4_162 and Pf1N1B4_163 are separated by 198 nucleotides Pf1N1B4_163 and Pf1N1B4_164 overlap by 4 nucleotides Pf1N1B4_164 and Pf1N1B4_165 are separated by 124 nucleotides
Pf1N1B4_161 - hypothetical protein, at 203,382 to 203,504
_161
Pf1N1B4_162 - Aha1 domain superfamily, at 203,682 to 204,170
_162
Pf1N1B4_163 - ADP-ribosylglycohydrolase, at 204,369 to 205,313
_163
Pf1N1B4_164 - ADP-ribosylglycohydrolase family protein, at 205,310 to 205,708
_164
Pf1N1B4_165 - FIG00638667: hypothetical protein, at 205,833 to 206,210
_165
Position (kb) 204
205
206 Strain fitness (log2 ratio) -2
-1
0
1
2 at 203.369 kb on + strand at 203.370 kb on - strand at 203.375 kb on + strand at 203.375 kb on + strand at 203.376 kb on - strand at 203.487 kb on - strand, within Pf1N1B4_161 at 203.540 kb on + strand at 203.540 kb on + strand at 203.541 kb on - strand at 203.541 kb on - strand at 203.541 kb on - strand at 203.541 kb on - strand at 203.541 kb on - strand at 203.541 kb on - strand at 203.577 kb on + strand at 203.578 kb on - strand at 203.578 kb on - strand at 203.578 kb on - strand at 203.578 kb on - strand at 203.578 kb on - strand at 203.578 kb on - strand at 203.578 kb on - strand at 203.578 kb on - strand at 203.578 kb on - strand at 203.578 kb on - strand at 203.578 kb on - strand at 203.578 kb on - strand at 203.578 kb on - strand at 203.578 kb on - strand at 203.578 kb on - strand at 203.578 kb on - strand at 203.578 kb on - strand at 203.581 kb on + strand at 203.582 kb on - strand at 203.582 kb on - strand at 203.582 kb on - strand at 203.582 kb on - strand at 203.582 kb on - strand at 203.582 kb on - strand at 203.593 kb on + strand at 203.594 kb on - strand at 203.594 kb on - strand at 203.607 kb on + strand at 203.635 kb on + strand at 203.636 kb on - strand at 203.636 kb on - strand at 203.985 kb on + strand, within Pf1N1B4_162 at 203.986 kb on - strand, within Pf1N1B4_162 at 203.986 kb on - strand, within Pf1N1B4_162 at 204.047 kb on + strand, within Pf1N1B4_162 at 204.170 kb on + strand at 204.170 kb on + strand at 204.170 kb on + strand at 204.170 kb on + strand at 204.170 kb on + strand at 204.171 kb on - strand at 204.171 kb on - strand at 204.171 kb on - strand at 204.171 kb on - strand at 204.184 kb on + strand at 204.184 kb on + strand at 204.203 kb on - strand at 204.212 kb on - strand at 204.222 kb on + strand at 204.231 kb on + strand at 204.266 kb on + strand at 204.289 kb on - strand at 204.355 kb on + strand at 204.355 kb on + strand at 204.356 kb on - strand at 204.672 kb on - strand, within Pf1N1B4_163 at 204.672 kb on - strand, within Pf1N1B4_163 at 204.672 kb on - strand at 204.672 kb on - strand, within Pf1N1B4_163 at 204.672 kb on - strand at 204.782 kb on - strand, within Pf1N1B4_163 at 204.789 kb on + strand, within Pf1N1B4_163 at 204.792 kb on + strand, within Pf1N1B4_163 at 204.792 kb on + strand, within Pf1N1B4_163 at 204.792 kb on + strand, within Pf1N1B4_163 at 204.793 kb on - strand, within Pf1N1B4_163 at 205.176 kb on + strand, within Pf1N1B4_163 at 205.315 kb on + strand at 205.353 kb on - strand, within Pf1N1B4_164 at 205.497 kb on - strand, within Pf1N1B4_164 at 205.497 kb on - strand, within Pf1N1B4_164 at 205.581 kb on + strand, within Pf1N1B4_164 at 205.582 kb on - strand, within Pf1N1B4_164 at 205.582 kb on - strand, within Pf1N1B4_164 at 205.670 kb on + strand at 205.670 kb on + strand at 205.706 kb on + strand at 205.706 kb on + strand at 205.706 kb on + strand at 205.706 kb on + strand at 205.707 kb on - strand at 205.707 kb on - strand at 206.094 kb on + strand, within Pf1N1B4_165 at 206.107 kb on - strand, within Pf1N1B4_165 at 206.160 kb on + strand at 206.160 kb on + strand, within Pf1N1B4_165 at 206.160 kb on + strand, within Pf1N1B4_165 at 206.160 kb on + strand, within Pf1N1B4_165 at 206.160 kb on + strand, within Pf1N1B4_165 at 206.160 kb on + strand at 206.160 kb on + strand, within Pf1N1B4_165 at 206.161 kb on - strand at 206.295 kb on + strand at 206.296 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 1 mM remove 203,369 + -1.2 203,370 - +1.4 203,375 + -0.8 203,375 + -1.0 203,376 - +0.4 203,487 - Pf1N1B4_161 0.85 +0.6 203,540 + -0.2 203,540 + -1.2 203,541 - +0.8 203,541 - +1.4 203,541 - +0.8 203,541 - -0.1 203,541 - -1.2 203,541 - -0.5 203,577 + -2.4 203,578 - +0.0 203,578 - -0.2 203,578 - +0.0 203,578 - -0.3 203,578 - -1.7 203,578 - +0.3 203,578 - -0.8 203,578 - -1.4 203,578 - +0.2 203,578 - -0.3 203,578 - -0.8 203,578 - +0.8 203,578 - +0.8 203,578 - -1.5 203,578 - -0.9 203,578 - -0.2 203,578 - -0.0 203,581 + -0.2 203,582 - -0.3 203,582 - +0.2 203,582 - -0.2 203,582 - +1.6 203,582 - +0.4 203,582 - +0.7 203,593 + -0.6 203,594 - -1.2 203,594 - -1.0 203,607 + -0.5 203,635 + +0.0 203,636 - -1.0 203,636 - -0.3 203,985 + Pf1N1B4_162 0.62 -1.8 203,986 - Pf1N1B4_162 0.62 -0.8 203,986 - Pf1N1B4_162 0.62 +1.5 204,047 + Pf1N1B4_162 0.75 -2.2 204,170 + +1.4 204,170 + -0.6 204,170 + +0.4 204,170 + -0.2 204,170 + -0.4 204,171 - -0.0 204,171 - -1.0 204,171 - +0.2 204,171 - -0.2 204,184 + -0.9 204,184 + +0.2 204,203 - -0.8 204,212 - -0.7 204,222 + +0.8 204,231 + -0.4 204,266 + -1.2 204,289 - +0.4 204,355 + +0.4 204,355 + +0.2 204,356 - -0.2 204,672 - Pf1N1B4_163 0.32 -2.0 204,672 - Pf1N1B4_163 0.32 -0.4 204,672 - +0.8 204,672 - Pf1N1B4_163 0.32 -2.4 204,672 - +1.8 204,782 - Pf1N1B4_163 0.44 -1.8 204,789 + Pf1N1B4_163 0.44 -0.8 204,792 + Pf1N1B4_163 0.45 -2.4 204,792 + Pf1N1B4_163 0.45 -0.4 204,792 + Pf1N1B4_163 0.45 +0.6 204,793 - Pf1N1B4_163 0.45 -0.2 205,176 + Pf1N1B4_163 0.85 -1.6 205,315 + -0.8 205,353 - Pf1N1B4_164 0.11 +1.4 205,497 - Pf1N1B4_164 0.47 -0.3 205,497 - Pf1N1B4_164 0.47 -1.7 205,581 + Pf1N1B4_164 0.68 +1.4 205,582 - Pf1N1B4_164 0.68 -0.2 205,582 - Pf1N1B4_164 0.68 +0.8 205,670 + +0.4 205,670 + -0.6 205,706 + +0.2 205,706 + -1.0 205,706 + -0.6 205,706 + -0.6 205,707 - -1.2 205,707 - -0.2 206,094 + Pf1N1B4_165 0.69 -1.8 206,107 - Pf1N1B4_165 0.72 -0.8 206,160 + -1.2 206,160 + Pf1N1B4_165 0.87 -0.6 206,160 + Pf1N1B4_165 0.87 +1.8 206,160 + Pf1N1B4_165 0.87 +0.2 206,160 + Pf1N1B4_165 0.87 -2.0 206,160 + -0.2 206,160 + Pf1N1B4_165 0.87 +0.4 206,161 - +0.8 206,295 + -0.1 206,296 - +1.4
Or see this region's nucleotide sequence