Experiment: Chlorite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_139 and Pf1N1B4_140 are separated by 43 nucleotides Pf1N1B4_140 and Pf1N1B4_141 are separated by 272 nucleotides
Pf1N1B4_139 - Pyoverdin biosynthesis protein PvdN, putative aminotransferase, class V, at 155,912 to 157,198
_139
Pf1N1B4_140 - PvdO, pyoverdine responsive serine/threonine kinase (predicted by OlgaV), at 157,242 to 158,129
_140
Pf1N1B4_141 - PvdE, pyoverdine ABC export system, fused ATPase and permease components, at 158,402 to 160,051
_141
Position (kb) 157
158
159 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 156.360 kb on - strand, within Pf1N1B4_139 at 156.360 kb on - strand, within Pf1N1B4_139 at 156.360 kb on - strand, within Pf1N1B4_139 at 156.617 kb on + strand, within Pf1N1B4_139 at 156.618 kb on - strand, within Pf1N1B4_139 at 156.618 kb on - strand, within Pf1N1B4_139 at 157.242 kb on - strand at 157.242 kb on - strand at 157.542 kb on + strand, within Pf1N1B4_140 at 157.677 kb on + strand, within Pf1N1B4_140 at 157.677 kb on + strand, within Pf1N1B4_140 at 157.677 kb on + strand, within Pf1N1B4_140 at 157.677 kb on + strand, within Pf1N1B4_140 at 157.743 kb on + strand, within Pf1N1B4_140 at 157.744 kb on - strand at 157.831 kb on - strand, within Pf1N1B4_140 at 157.848 kb on + strand, within Pf1N1B4_140 at 157.921 kb on - strand, within Pf1N1B4_140 at 157.921 kb on - strand, within Pf1N1B4_140 at 157.953 kb on + strand, within Pf1N1B4_140 at 157.953 kb on + strand, within Pf1N1B4_140 at 157.954 kb on - strand, within Pf1N1B4_140 at 157.954 kb on - strand, within Pf1N1B4_140 at 157.954 kb on - strand, within Pf1N1B4_140 at 157.954 kb on - strand, within Pf1N1B4_140 at 158.113 kb on + strand at 158.215 kb on + strand at 158.230 kb on - strand at 158.230 kb on - strand at 158.314 kb on + strand at 158.315 kb on - strand at 158.335 kb on + strand at 158.336 kb on - strand at 158.365 kb on + strand at 158.645 kb on + strand, within Pf1N1B4_141 at 158.645 kb on + strand, within Pf1N1B4_141 at 158.645 kb on + strand, within Pf1N1B4_141 at 158.645 kb on + strand, within Pf1N1B4_141 at 158.646 kb on - strand, within Pf1N1B4_141 at 158.769 kb on + strand, within Pf1N1B4_141 at 158.770 kb on - strand, within Pf1N1B4_141 at 158.770 kb on - strand, within Pf1N1B4_141 at 158.878 kb on - strand, within Pf1N1B4_141 at 158.878 kb on - strand, within Pf1N1B4_141 at 159.116 kb on - strand, within Pf1N1B4_141 at 159.116 kb on - strand, within Pf1N1B4_141
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 1 mM remove 156,360 - Pf1N1B4_139 0.35 +1.0 156,360 - Pf1N1B4_139 0.35 +0.2 156,360 - Pf1N1B4_139 0.35 +0.4 156,617 + Pf1N1B4_139 0.55 -0.2 156,618 - Pf1N1B4_139 0.55 -0.2 156,618 - Pf1N1B4_139 0.55 +1.8 157,242 - +1.5 157,242 - +0.0 157,542 + Pf1N1B4_140 0.34 -0.8 157,677 + Pf1N1B4_140 0.49 -0.6 157,677 + Pf1N1B4_140 0.49 +2.1 157,677 + Pf1N1B4_140 0.49 +1.2 157,677 + Pf1N1B4_140 0.49 -0.6 157,743 + Pf1N1B4_140 0.56 -1.2 157,744 - -1.2 157,831 - Pf1N1B4_140 0.66 +1.0 157,848 + Pf1N1B4_140 0.68 +1.4 157,921 - Pf1N1B4_140 0.76 +0.8 157,921 - Pf1N1B4_140 0.76 +0.8 157,953 + Pf1N1B4_140 0.80 +2.9 157,953 + Pf1N1B4_140 0.80 -0.2 157,954 - Pf1N1B4_140 0.80 +1.4 157,954 - Pf1N1B4_140 0.80 -1.0 157,954 - Pf1N1B4_140 0.80 -0.6 157,954 - Pf1N1B4_140 0.80 -0.5 158,113 + -0.5 158,215 + +0.1 158,230 - +0.4 158,230 - +1.8 158,314 + -0.3 158,315 - +0.8 158,335 + +0.8 158,336 - -0.1 158,365 + +0.8 158,645 + Pf1N1B4_141 0.15 -0.8 158,645 + Pf1N1B4_141 0.15 -1.8 158,645 + Pf1N1B4_141 0.15 +0.0 158,645 + Pf1N1B4_141 0.15 -1.3 158,646 - Pf1N1B4_141 0.15 -0.2 158,769 + Pf1N1B4_141 0.22 +0.5 158,770 - Pf1N1B4_141 0.22 -0.2 158,770 - Pf1N1B4_141 0.22 -0.5 158,878 - Pf1N1B4_141 0.29 -0.9 158,878 - Pf1N1B4_141 0.29 -0.2 159,116 - Pf1N1B4_141 0.43 -2.0 159,116 - Pf1N1B4_141 0.43 -0.3
Or see this region's nucleotide sequence