Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1263

Experiment: Chlorite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1262 and Pf1N1B4_1263 overlap by 4 nucleotidesPf1N1B4_1263 and Pf1N1B4_1264 overlap by 47 nucleotides Pf1N1B4_1262 - Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4), at 1,441,902 to 1,444,295 _1262 Pf1N1B4_1263 - Cu(I)-responsive transcriptional regulator, at 1,444,292 to 1,444,705 _1263 Pf1N1B4_1264 - Integral membrane efflux protein, at 1,444,659 to 1,445,873 _1264 Position (kb) 1444 1445Strain fitness (log2 ratio) -2 -1 0 1at 1443.785 kb on - strand, within Pf1N1B4_1262at 1444.108 kb on - strandat 1444.146 kb on + strandat 1444.146 kb on + strandat 1444.146 kb on + strandat 1444.147 kb on - strandat 1444.147 kb on - strandat 1444.147 kb on - strandat 1444.249 kb on + strandat 1444.349 kb on + strand, within Pf1N1B4_1263at 1444.349 kb on + strand, within Pf1N1B4_1263at 1444.406 kb on + strand, within Pf1N1B4_1263at 1444.426 kb on + strand, within Pf1N1B4_1263at 1444.427 kb on - strand, within Pf1N1B4_1263at 1444.618 kb on - strand, within Pf1N1B4_1263at 1444.789 kb on + strand, within Pf1N1B4_1264at 1444.790 kb on - strand, within Pf1N1B4_1264at 1444.964 kb on - strand, within Pf1N1B4_1264at 1445.055 kb on - strand, within Pf1N1B4_1264at 1445.360 kb on - strand, within Pf1N1B4_1264at 1445.360 kb on - strand, within Pf1N1B4_1264at 1445.360 kb on - strand, within Pf1N1B4_1264at 1445.360 kb on - strand, within Pf1N1B4_1264at 1445.360 kb on - strand, within Pf1N1B4_1264at 1445.512 kb on - strand, within Pf1N1B4_1264at 1445.683 kb on + strand, within Pf1N1B4_1264

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 1 mM
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1,443,785 - Pf1N1B4_1262 0.79 -0.5
1,444,108 - -0.4
1,444,146 + +1.3
1,444,146 + -1.2
1,444,146 + +0.7
1,444,147 - +1.3
1,444,147 - +0.8
1,444,147 - -0.3
1,444,249 + -1.3
1,444,349 + Pf1N1B4_1263 0.14 -2.2
1,444,349 + Pf1N1B4_1263 0.14 -1.2
1,444,406 + Pf1N1B4_1263 0.28 -0.7
1,444,426 + Pf1N1B4_1263 0.32 -0.7
1,444,427 - Pf1N1B4_1263 0.33 -2.2
1,444,618 - Pf1N1B4_1263 0.79 +0.3
1,444,789 + Pf1N1B4_1264 0.11 +0.3
1,444,790 - Pf1N1B4_1264 0.11 -0.2
1,444,964 - Pf1N1B4_1264 0.25 -0.4
1,445,055 - Pf1N1B4_1264 0.33 -1.3
1,445,360 - Pf1N1B4_1264 0.58 -0.3
1,445,360 - Pf1N1B4_1264 0.58 -1.6
1,445,360 - Pf1N1B4_1264 0.58 -1.0
1,445,360 - Pf1N1B4_1264 0.58 -1.7
1,445,360 - Pf1N1B4_1264 0.58 +0.1
1,445,512 - Pf1N1B4_1264 0.70 +0.2
1,445,683 + Pf1N1B4_1264 0.84 +0.1

Or see this region's nucleotide sequence