Experiment: Chlorite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_1085 and Pf1N1B4_1086 are separated by 66 nucleotides Pf1N1B4_1086 and Pf1N1B4_1087 are separated by 1 nucleotides Pf1N1B4_1087 and Pf1N1B4_1088 are separated by 27 nucleotides
Pf1N1B4_1085 - Metal transporter, ZIP family, at 1,215,760 to 1,216,617
_1085
Pf1N1B4_1086 - Manganese superoxide dismutase (EC 1.15.1.1), at 1,216,684 to 1,217,295
_1086
Pf1N1B4_1087 - FOG: TPR repeat, at 1,217,297 to 1,217,737
_1087
Pf1N1B4_1088 - Fumarate hydratase class II (EC 4.2.1.2), at 1,217,765 to 1,219,141
_1088
Position (kb)
1217
1218 Strain fitness (log2 ratio)
-1
0
1
2 at 1216.588 kb on + strand at 1216.653 kb on + strand at 1216.685 kb on + strand at 1216.685 kb on + strand at 1216.685 kb on + strand at 1216.686 kb on - strand at 1216.686 kb on - strand at 1216.739 kb on + strand at 1216.754 kb on + strand, within Pf1N1B4_1086 at 1216.754 kb on + strand, within Pf1N1B4_1086 at 1216.754 kb on + strand, within Pf1N1B4_1086 at 1216.755 kb on - strand, within Pf1N1B4_1086 at 1216.755 kb on - strand, within Pf1N1B4_1086 at 1216.784 kb on + strand, within Pf1N1B4_1086 at 1216.784 kb on + strand, within Pf1N1B4_1086 at 1216.785 kb on - strand, within Pf1N1B4_1086 at 1216.785 kb on - strand, within Pf1N1B4_1086 at 1216.785 kb on - strand, within Pf1N1B4_1086 at 1216.788 kb on - strand, within Pf1N1B4_1086 at 1216.824 kb on + strand, within Pf1N1B4_1086 at 1217.192 kb on + strand, within Pf1N1B4_1086 at 1217.192 kb on + strand, within Pf1N1B4_1086 at 1217.193 kb on - strand, within Pf1N1B4_1086 at 1217.193 kb on - strand, within Pf1N1B4_1086 at 1217.193 kb on - strand, within Pf1N1B4_1086 at 1217.213 kb on + strand, within Pf1N1B4_1086 at 1217.261 kb on + strand at 1217.261 kb on + strand at 1217.286 kb on + strand at 1217.286 kb on + strand at 1217.286 kb on + strand at 1217.287 kb on - strand at 1217.287 kb on - strand at 1217.315 kb on + strand at 1217.315 kb on + strand at 1217.316 kb on - strand at 1217.316 kb on - strand at 1217.316 kb on - strand at 1217.418 kb on + strand, within Pf1N1B4_1087 at 1217.418 kb on + strand at 1217.418 kb on + strand at 1217.419 kb on - strand, within Pf1N1B4_1087 at 1217.489 kb on + strand, within Pf1N1B4_1087 at 1217.489 kb on + strand, within Pf1N1B4_1087 at 1217.570 kb on - strand, within Pf1N1B4_1087 at 1217.658 kb on + strand, within Pf1N1B4_1087 at 1217.658 kb on + strand, within Pf1N1B4_1087 at 1217.659 kb on - strand, within Pf1N1B4_1087 at 1217.659 kb on - strand, within Pf1N1B4_1087 at 1217.766 kb on + strand at 1217.767 kb on - strand at 1217.874 kb on + strand at 1217.874 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 1 mM remove 1,216,588 + -0.7 1,216,653 + -0.0 1,216,685 + +1.1 1,216,685 + +0.5 1,216,685 + -1.2 1,216,686 - -1.1 1,216,686 - +0.4 1,216,739 + -0.2 1,216,754 + Pf1N1B4_1086 0.11 -1.0 1,216,754 + Pf1N1B4_1086 0.11 -0.3 1,216,754 + Pf1N1B4_1086 0.11 +0.0 1,216,755 - Pf1N1B4_1086 0.12 +1.1 1,216,755 - Pf1N1B4_1086 0.12 +0.1 1,216,784 + Pf1N1B4_1086 0.16 +0.0 1,216,784 + Pf1N1B4_1086 0.16 -0.3 1,216,785 - Pf1N1B4_1086 0.17 +1.5 1,216,785 - Pf1N1B4_1086 0.17 -0.9 1,216,785 - Pf1N1B4_1086 0.17 +1.6 1,216,788 - Pf1N1B4_1086 0.17 +0.1 1,216,824 + Pf1N1B4_1086 0.23 -0.0 1,217,192 + Pf1N1B4_1086 0.83 +2.1 1,217,192 + Pf1N1B4_1086 0.83 -1.7 1,217,193 - Pf1N1B4_1086 0.83 -0.6 1,217,193 - Pf1N1B4_1086 0.83 +0.3 1,217,193 - Pf1N1B4_1086 0.83 +0.9 1,217,213 + Pf1N1B4_1086 0.86 +0.9 1,217,261 + +0.1 1,217,261 + +0.7 1,217,286 + +1.5 1,217,286 + -0.9 1,217,286 + +1.7 1,217,287 - +0.3 1,217,287 - +0.9 1,217,315 + -0.3 1,217,315 + -0.4 1,217,316 - -0.4 1,217,316 - +0.1 1,217,316 - -1.4 1,217,418 + Pf1N1B4_1087 0.27 -0.0 1,217,418 + +1.1 1,217,418 + -0.4 1,217,419 - Pf1N1B4_1087 0.28 +0.4 1,217,489 + Pf1N1B4_1087 0.44 +0.3 1,217,489 + Pf1N1B4_1087 0.44 +2.1 1,217,570 - Pf1N1B4_1087 0.62 +0.1 1,217,658 + Pf1N1B4_1087 0.82 +0.1 1,217,658 + Pf1N1B4_1087 0.82 +0.1 1,217,659 - Pf1N1B4_1087 0.82 +1.0 1,217,659 - Pf1N1B4_1087 0.82 +1.1 1,217,766 + +0.1 1,217,767 - -1.3 1,217,874 + +0.3 1,217,874 + -1.7
Or see this region's nucleotide sequence