Experiment: PYE with Tetracycline 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03652 and CCNA_03653 are separated by 123 nucleotides CCNA_03653 and CCNA_03910 are separated by 212 nucleotides CCNA_03910 and CCNA_03655 are separated by 85 nucleotides
CCNA_03652: CCNA_03652 - ATP-dependent nuclease subunit A, at 3,811,849 to 3,815,310
_03652
CCNA_03653: CCNA_03653 - thioredoxin, at 3,815,434 to 3,815,766
_03653
CCNA_03910: CCNA_03910 - hypothetical protein, at 3,815,979 to 3,816,086
_03910
CCNA_03655: CCNA_03655 - folylpolyglutamate synthase/dihydrofolate synthase, at 3,816,172 to 3,817,485
_03655
Position (kb)
3815
3816
3817 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3814.981 kb on - strand at 3814.983 kb on + strand at 3814.988 kb on + strand at 3814.991 kb on - strand at 3815.014 kb on - strand at 3815.038 kb on + strand at 3815.040 kb on - strand at 3815.044 kb on + strand at 3815.062 kb on - strand at 3815.170 kb on - strand at 3815.230 kb on + strand at 3815.235 kb on + strand at 3815.249 kb on + strand at 3815.249 kb on + strand at 3815.249 kb on + strand at 3815.249 kb on + strand at 3815.249 kb on + strand at 3815.249 kb on + strand at 3815.249 kb on + strand at 3815.257 kb on - strand at 3815.277 kb on + strand at 3815.285 kb on + strand at 3815.305 kb on + strand at 3815.305 kb on + strand at 3815.305 kb on + strand at 3815.312 kb on - strand at 3815.313 kb on - strand at 3815.336 kb on + strand at 3815.344 kb on - strand at 3815.378 kb on - strand at 3815.420 kb on + strand at 3815.425 kb on + strand at 3815.428 kb on - strand at 3815.770 kb on + strand at 3815.800 kb on - strand at 3815.860 kb on + strand at 3815.923 kb on + strand at 3815.936 kb on - strand at 3815.938 kb on + strand at 3816.004 kb on + strand, within CCNA_03910 at 3816.012 kb on - strand, within CCNA_03910 at 3816.069 kb on + strand, within CCNA_03910 at 3816.145 kb on - strand at 3816.155 kb on - strand at 3816.159 kb on - strand at 3816.169 kb on + strand at 3816.177 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Tetracycline 0.00005 mg/ml remove 3,814,981 - -0.5 3,814,983 + -0.2 3,814,988 + -0.5 3,814,991 - -1.3 3,815,014 - +1.9 3,815,038 + -1.1 3,815,040 - -1.0 3,815,044 + +1.7 3,815,062 - +0.9 3,815,170 - -0.4 3,815,230 + -2.4 3,815,235 + +0.7 3,815,249 + +0.7 3,815,249 + +0.8 3,815,249 + -0.5 3,815,249 + +0.1 3,815,249 + +0.8 3,815,249 + +0.5 3,815,249 + +1.0 3,815,257 - +1.3 3,815,277 + -0.1 3,815,285 + -0.9 3,815,305 + -1.6 3,815,305 + +0.6 3,815,305 + -0.6 3,815,312 - +0.9 3,815,313 - -1.2 3,815,336 + +0.9 3,815,344 - -1.5 3,815,378 - -0.6 3,815,420 + +0.8 3,815,425 + +0.8 3,815,428 - -0.0 3,815,770 + -0.1 3,815,800 - -1.2 3,815,860 + -0.1 3,815,923 + -0.0 3,815,936 - -0.4 3,815,938 + +0.3 3,816,004 + CCNA_03910 0.23 -1.4 3,816,012 - CCNA_03910 0.31 -1.3 3,816,069 + CCNA_03910 0.83 -0.2 3,816,145 - -0.6 3,816,155 - +0.6 3,816,159 - +0.0 3,816,169 + +0.1 3,816,177 - +1.3
Or see this region's nucleotide sequence