Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02396

Experiment: PYE with Tetracycline 0.00005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Tetracycline 0.00005 mg/ml
2,537,667	-		CCNA_02394	0.42	+0.4
2,537,672	-		CCNA_02394	0.43	+0.1
2,537,672	-		CCNA_02394	0.43	+0.9
2,537,727	+		CCNA_02394	0.51	-0.9
2,537,729	+		CCNA_02394	0.51	-0.2
2,537,729	+		CCNA_02394	0.51	+0.1
2,537,729	+		CCNA_02394	0.51	+0.2
2,537,732	-		CCNA_02394	0.52	-0.4
2,537,732	-		CCNA_02394	0.52	+1.5
2,537,752	-		CCNA_02394	0.55	-0.2
2,537,752	-		CCNA_02394	0.55	+1.0
2,537,793	-		CCNA_02394	0.61	+0.8
2,537,816	-		CCNA_02394	0.64	+0.7
2,537,844	-		CCNA_02394	0.68	+0.5
2,537,893	-		CCNA_02394	0.76	+1.0
2,537,906	+		CCNA_02394	0.78	-0.2
2,537,909	+		CCNA_02394	0.78	-0.4
2,537,917	-		CCNA_02394	0.79	+0.5
2,537,925	+		CCNA_02394	0.81	+0.2
2,537,932	-		CCNA_02394	0.82	+0.8
2,537,932	-		CCNA_02394	0.82	+1.4
2,537,933	-		CCNA_02394	0.82	+0.7
2,537,933	-		CCNA_02394	0.82	+0.4
2,537,940	+		CCNA_02394	0.83	+0.4
2,537,945	+		CCNA_02394	0.84	+1.7
2,537,953	-		CCNA_02394	0.85	-1.1
2,537,972	+		CCNA_02394	0.88	-2.3
2,538,003	-				+1.9
2,538,015	-				+0.8
2,538,030	+				+1.3
2,538,062	-				+1.6
2,538,064	+				-0.7
2,538,067	-				+1.2
2,538,072	-				+1.0
2,538,120	+				+0.2
2,538,141	+				-1.9
2,538,149	-				+1.4
2,538,149	-				+1.4
2,538,149	-				+1.7
2,538,159	-				+1.2
2,538,171	-				+1.7
2,538,178	-				+1.0
2,538,210	+		CCNA_02395	0.15	+1.0
2,538,218	-		CCNA_02395	0.18	+1.7
2,538,218	-		CCNA_02395	0.18	+1.2
2,538,218	-		CCNA_02395	0.18	+1.7
2,538,218	-		CCNA_02395	0.18	+0.9
2,538,229	+		CCNA_02395	0.21	-1.3
2,538,286	+		CCNA_02395	0.38	-2.7
2,538,286	+		CCNA_02395	0.38	+0.3
2,538,294	-		CCNA_02395	0.41	+1.7
2,538,294	-		CCNA_02395	0.41	+1.9
2,538,301	-		CCNA_02395	0.43	+2.0
2,538,304	-		CCNA_02395	0.44	+0.9
2,538,304	-		CCNA_02395	0.44	+1.2
2,538,320	+		CCNA_02395	0.48	+1.3
2,538,338	-		CCNA_02395	0.54	+1.5
2,538,368	+		CCNA_02395	0.63	-2.3
2,538,376	+				+1.3
2,538,394	+		CCNA_02395	0.71	-1.2
2,538,429	+		CCNA_02395	0.82	-3.0
2,538,429	+		CCNA_02395	0.82	-0.6
2,538,451	-		CCNA_02395	0.88	+1.8
2,538,504	-				+0.8
2,538,546	+				-0.5
2,538,546	+				-0.7
2,538,546	+				-0.5
2,538,554	-				-0.2
2,538,554	-				+1.0
2,538,576	+				-1.5
2,538,576	+				+1.7
2,538,576	+				-1.2
2,538,584	-				-1.7
2,538,584	-				+1.6
2,538,678	+				+0.7
2,538,678	+				+0.7
2,538,678	+				-2.0
2,538,681	-				-0.4
2,538,688	-				+0.2
2,538,688	-				-2.0
2,538,688	-				+3.3
2,538,698	-				+1.2
2,538,703	-				-0.7
2,538,703	-				-1.2
2,538,703	-				+0.0
2,538,703	-				+0.1
2,538,703	-				-0.9
2,538,703	-				-1.7
2,538,703	-				-0.6
2,538,703	-				-0.7
2,538,722	+				-0.7
2,538,841	-		CCNA_02396	0.25	+2.2
2,538,851	+		CCNA_02396	0.26	+0.5
2,538,851	+		CCNA_02396	0.26	-0.3
2,538,852	+		CCNA_02396	0.26	+1.5
2,538,857	+		CCNA_02396	0.27	-2.0
2,538,857	+		CCNA_02396	0.27	-0.8
2,538,859	-		CCNA_02396	0.27	-1.9
2,538,865	-		CCNA_02396	0.28	-0.8
2,538,865	-		CCNA_02396	0.28	-1.3
2,538,865	-		CCNA_02396	0.28	+1.7
2,538,865	-		CCNA_02396	0.28	-0.0
2,538,867	+		CCNA_02396	0.28	+0.2
2,538,877	+		CCNA_02396	0.30	-1.9
2,538,877	+		CCNA_02396	0.30	-0.2
2,538,927	+		CCNA_02396	0.36	-0.0
2,538,972	+		CCNA_02396	0.43	-0.9
2,538,982	+		CCNA_02396	0.44	-0.5
2,538,982	-		CCNA_02396	0.44	-0.1
2,539,083	-		CCNA_02396	0.58	-1.2
2,539,083	-		CCNA_02396	0.58	-0.8
2,539,085	+		CCNA_02396	0.58	-2.3
2,539,118	+		CCNA_02396	0.63	+0.5
2,539,123	+		CCNA_02396	0.63	-1.9
2,539,123	+		CCNA_02396	0.63	-1.0
2,539,131	-		CCNA_02396	0.64	-0.4
2,539,131	-		CCNA_02396	0.64	-0.9
2,539,131	-		CCNA_02396	0.64	+1.0
2,539,131	-		CCNA_02396	0.64	-1.5
2,539,131	-		CCNA_02396	0.64	-1.0
2,539,131	-		CCNA_02396	0.64	+0.4
2,539,143	-		CCNA_02396	0.66	+0.2
2,539,149	+		CCNA_02396	0.67	-1.2
2,539,186	+		CCNA_02396	0.72	-0.7
2,539,195	+		CCNA_02396	0.73	-2.5
2,539,195	+		CCNA_02396	0.73	+0.5
2,539,203	-		CCNA_02396	0.74	-2.3
2,539,216	+		CCNA_02396	0.76	-0.3
2,539,226	-		CCNA_02396	0.78	-2.7
2,539,235	+		CCNA_02396	0.79	-2.8
2,539,243	-		CCNA_02396	0.80	-0.4
2,539,243	-		CCNA_02396	0.80	-3.0
2,539,243	-		CCNA_02396	0.80	-0.9
2,539,262	+		CCNA_02396	0.82	-2.4
2,539,262	+		CCNA_02396	0.82	+0.6
2,539,324	-				-0.9
2,539,324	-				-0.8
2,539,353	+				-0.9
2,539,361	-				+0.6
2,539,373	-				-0.3
2,539,464	+				-0.1
2,539,464	+				-0.5
2,539,472	-				+0.6
2,539,472	-				-0.2
2,539,479	+				-0.6
2,539,479	+				-1.8
2,539,487	-				+3.0
2,539,512	+				-1.3
2,539,521	-				-0.5
2,539,531	+				-1.6
2,539,539	-				-0.5
2,539,576	+		CCNA_02397	0.13	-0.4
2,539,576	+		CCNA_02397	0.13	-1.4
2,539,576	+		CCNA_02397	0.13	+0.7
2,539,584	-		CCNA_02397	0.14	+0.9
2,539,625	-		CCNA_02397	0.20	-1.9
2,539,744	-		CCNA_02397	0.36	-0.4
2,539,756	+		CCNA_02397	0.38	-1.2
2,539,761	+		CCNA_02397	0.39	+0.2
2,539,766	+		CCNA_02397	0.39	+0.8
2,539,766	+		CCNA_02397	0.39	+0.2
2,539,766	+		CCNA_02397	0.39	-2.3
2,539,769	-		CCNA_02397	0.40	-1.5
2,539,774	-		CCNA_02397	0.41	-0.6
2,539,774	-		CCNA_02397	0.41	+0.4
2,539,774	-				+1.0
2,539,774	-		CCNA_02397	0.41	+1.7
2,539,782	+		CCNA_02397	0.42	-1.7
2,539,831	-		CCNA_02397	0.48	+1.4
2,539,878	-		CCNA_02397	0.55	-0.2
2,539,901	+		CCNA_02397	0.58	-1.5
2,539,902	-		CCNA_02397	0.58	-1.8
2,539,902	-		CCNA_02397	0.58	-0.9
2,539,908	+		CCNA_02397	0.59	-1.7
2,539,979	+		CCNA_02397	0.69	-2.1
2,539,984	+		CCNA_02397	0.70	+0.5
2,539,984	+		CCNA_02397	0.70	-1.1
2,539,987	-		CCNA_02397	0.70	-0.0
2,539,987	-		CCNA_02397	0.70	-2.9
2,540,002	+		CCNA_02397	0.72	-0.7
2,540,030	-		CCNA_02397	0.76	-0.8
2,540,051	+		CCNA_02397	0.79	-0.5
2,540,052	+		CCNA_02397	0.79	-0.9
2,540,090	+		CCNA_02397	0.84	+0.1
2,540,090	+		CCNA_02397	0.84	+1.1
2,540,140	-				-1.3
2,540,178	-				-2.3
2,540,195	+				-1.6
2,540,205	+				+1.3
2,540,223	+				-1.5
2,540,228	+				-0.3
2,540,231	-				-0.5
2,540,231	-				+1.3
2,540,231	-				-0.0
2,540,231	-				-0.0
2,540,241	-				-1.8
2,540,275	+				+1.3
2,540,275	+				-0.3
2,540,283	-				-0.3
2,540,283	-				-0.3
2,540,319	+		CCNA_02398	0.12	-0.4
2,540,325	+		CCNA_02398	0.13	+0.2
2,540,325	+		CCNA_02398	0.13	-0.9
2,540,325	+		CCNA_02398	0.13	+1.0
2,540,325	+		CCNA_02398	0.13	-0.4
2,540,325	+		CCNA_02398	0.13	-0.6
2,540,333	-		CCNA_02398	0.14	-1.0
2,540,333	-		CCNA_02398	0.14	-0.4
2,540,333	-		CCNA_02398	0.14	-0.9
2,540,356	-		CCNA_02398	0.16	+1.0
2,540,376	+		CCNA_02398	0.18	-0.0
2,540,376	+		CCNA_02398	0.18	-0.6
2,540,376	+		CCNA_02398	0.18	+0.5
2,540,379	-		CCNA_02398	0.18	+0.2
2,540,384	-		CCNA_02398	0.19	-1.4
2,540,384	-		CCNA_02398	0.19	-0.6
2,540,384	-		CCNA_02398	0.19	-0.0
2,540,384	-		CCNA_02398	0.19	-1.2
2,540,384	-		CCNA_02398	0.19	+0.8
2,540,384	-		CCNA_02398	0.19	-1.6
2,540,384	-		CCNA_02398	0.19	-0.5
2,540,384	-		CCNA_02398	0.19	-2.2
2,540,384	-		CCNA_02398	0.19	-0.0
2,540,384	-		CCNA_02398	0.19	-0.0